Design of a degenerate primer pair to target a bacterial functional community: The
hppd bacterial gene coding for the enzyme targeted by herbicides, a study case.
J Microbiol Methods 2020;
170:105839. [PMID:
31926848 DOI:
10.1016/j.mimet.2020.105839]
[Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 01/08/2020] [Accepted: 01/08/2020] [Indexed: 10/25/2022]
Abstract
The present work aimed to design a degenerate primer pair to target a large part of the hppd soil bacterial community, possibly affected by herbicides. We validated these primers by qPCR and high-throughput sequencing analysis of soil samples.
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