Theoretical insight into the regioselective formation of pyrazolo[1,4]-oxazepine and -oxazines

AuCl-, AuCl3-, or AuClPEt3-catalyzed formation mechanisms of pyrazolo[1,4]oxazepines and the NaH-promoted mechanism of pyrazolo[1,4]oxazines were investigated computationally. The structural properties of the reactants were studied in various solvents and with different functionals. The hybrid functionals B3LYP, M06, M06-2X, PBEPBE, and wB97X-D in density functional theory were used to determine and discuss the energetics of the compounds. The electronic properties of groups (R = H or R ≠ H) attached to the alkyne moiety played an essential role in the corresponding 7-endo-dig cyclization or 6-exo-dig cyclization in the presence of a gold catalyst. The regioselectivities of the products were investigated, and the natural bond orbitals of the reactants were determined. Furthermore, a gold-catalyzed alternative mechanism is suggested for synthesizing pyrazolo[1,4]oxazines using a terminal alkyne (R = H) moiety as substrate.

DFT study of structural and electronic properties of 1,4-diarylcyclopenta[d] pyridazines and oxazines for non-linear optical applications

Polymer and molecular-based electronic materials incorporating heterocycles like thiophenes and pyrroles are attractive possibilities as substitutes for semimetal materials. Heterocyclic materials are heavily studied in this regard due to the large variations in possible substrates. Herein we evaluated four different 5,6-fused ring heterocycles to gain a better understanding of any favorable optical and electronic properties that were due to incorporation of certain moieties. The molecules chosen would highlight the effects that the central ring (pyridazine versus oxazine), aromatic substituent, and heterocyclic side group may have on electronic and optical properties. Computational analysis of these four molecules was done using density functional theory (B3LYP and PBEPBE) with 6-31G(d,p), 6-311 ++G(d,p), and cc-pVTZ basis sets. The constituent molecules were optimized, and calculations were done for the dipole moment, polarizability, first-order hyperpolarizability (β), HOMO and LUMO orbitals, and a natural bonding order (NBO) analysis. These calculations allow for the study of charge density via electrostatic potential mapping and bonding orbitals. The results indicated that the pyridazine molecules presented here are more favorable than the oxazines for non-linear optical (NLO) applications. It is also noted that side ring substituents (thienyl and furyl) in the two pyridazines studied showed very little calculated differences. Finally, heterocyclic rings showed more favorable properties when incorporated as substituents for NLO applications over hydrocarbon aromatics. Graphical abstract.

Far-red photoactivatable BODIPYs for the super-resolution imaging of live cells

The identification of viable designs to construct switchable fluorescent probes and operate them in the interior of live cells is essential to allow the acquisition of SMLM images and permit the visualization of cellular components with sub-diffraction resolution. Our laboratories developed a mechanism to switch the fluorescence of BODIPY chromophores with the photoinduced cleavage of oxazine heterocycles under mild 405-nm illumination. With appropriate structural modifications, these switchable molecules can be engineered to immobilize covalently on large biomolecules within lysosomal compartments of live COS-7 cells and produce bright far-red fluorescence with optimal contrast upon activation. Such a combination of properties permits the acquisition of PALM images of the labeled organelles with localization precision of ca. 15nm. This article reports the experimental protocols for the synthesis of and live-cell labeling with these compounds as well as for the reconstruction of super-resolution images of the resulting biological preparations.

Synthesis and characterization of novel oxazines and demonstration that they specifically target cyclooxygenase 2

In the present study, we used solution combustion synthesis-bismuth oxide (Bi2O3) as catalyst for the simple and efficient synthesis of 1,2-oxazine based derivatives of 6-fluoro-3-(piperidin-4-yl)benzo[d]isoxazoles, 1-arylpiperazine and carbazoles. (4aR,8aR)-4-(4-Methoxyphenyl)-3-((4-(4-methoxyphenyl)piperazin-1-yl)methyl)-4a,5,6,7,8,8a-hexahydro-4H-benzo[e][1,2]oxazine was found to be the most potent compound with a high degree of selectivity in inhibition towards COX2 (1.7 μM) over COX1 (40.4 μM) demonstrating the significance of 1,2-oxazine derivatives in developing COX2 specific inhibitors. Molecular docking analyses demonstrated that an isoleucine residue in the active site of COX1 is responsible for lower affinity to COX1 and increased potency towards COX2. Overall, our study reveals that the new 1,2-oxazine-based small molecules qualify as lead structures in developing COX2-specific inhibitors for anti-inflammatory therapy.