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Koç C, Gerlach D, Beck S, Peschel A, Xia G, Stehle T. Structural and enzymatic analysis of TarM glycosyltransferase from Staphylococcus aureus reveals an oligomeric protein specific for the glycosylation of wall teichoic acid. J Biol Chem 2015; 290:9874-85. [PMID: 25697358 DOI: 10.1074/jbc.m114.619924] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Indexed: 01/01/2023] Open
Abstract
Anionic glycopolymers known as wall teichoic acids (WTAs) functionalize the peptidoglycan layers of many Gram-positive bacteria. WTAs play central roles in many fundamental aspects of bacterial physiology, and they are important determinants of pathogenesis and antibiotic resistance. A number of enzymes that glycosylate WTA in Staphylococcus aureus have recently been identified. Among these is the glycosyltransferase TarM, a component of the WTA de novo biosynthesis pathway. TarM performs the synthesis of α-O-N-acetylglycosylated poly-5'-phosphoribitol in the WTA structure. We have solved the crystal structure of TarM at 2.4 Å resolution, and we have also determined a structure of the enzyme in complex with its substrate UDP-GlcNAc at 2.8 Å resolution. The protein assembles into a propeller-like homotrimer in which each blade contains a GT-B-type glycosyltransferase domain with a typical Rossmann fold. The enzymatic reaction retains the stereochemistry of the anomeric center of the transferred GlcNAc-moiety on the polyribitol backbone. TarM assembles into a trimer using a novel trimerization domain, here termed the HUB domain. Structure-guided mutagenesis experiments of TarM identify residues critical for enzyme activity, assign a putative role for the HUB in TarM function, and allow us to propose a likely reaction mechanism.
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Affiliation(s)
- Cengiz Koç
- From the Interfaculty Institute of Biochemistry, University of Tübingen, 72076 Tübingen, Germany
| | - David Gerlach
- Interfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany
| | - Sebastian Beck
- Interfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany
| | - Andreas Peschel
- Interfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany, German Center for Infection Research (DZIF), Partner site Tübingen, 72076 Tübingen, Germany
| | - Guoqing Xia
- Interfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany, Faculty of Medical and Human Sciences, Stopford Building, Institute of Inflammation and Repair, The University of Manchester, Oxford Road, Manchester, M13 9PT, United Kingdom, and
| | - Thilo Stehle
- From the Interfaculty Institute of Biochemistry, University of Tübingen, 72076 Tübingen, Germany, German Center for Infection Research (DZIF), Partner site Tübingen, 72076 Tübingen, Germany, Department of Pediatrics, Vanderbilt University School of Medicine, Nashville, Tennesse 37232
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Chan YGY, Kim HK, Schneewind O, Missiakas D. The capsular polysaccharide of Staphylococcus aureus is attached to peptidoglycan by the LytR-CpsA-Psr (LCP) family of enzymes. J Biol Chem 2014; 289:15680-90. [PMID: 24753256 DOI: 10.1074/jbc.m114.567669] [Citation(s) in RCA: 75] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Envelope biogenesis in bacteria involves synthesis of intermediates that are tethered to the lipid carrier undecaprenol-phosphate. LytR-CpsA-Psr (LCP) enzymes have been proposed to catalyze the transfer of undecaprenol-linked intermediates onto the C6-hydroxyl of MurNAc in peptidoglycan, thereby promoting attachment of wall teichoic acid (WTA) in bacilli and staphylococci and capsular polysaccharides (CPS) in streptococci. S. aureus encodes three lcp enzymes, and a variant lacking all three genes (Δlcp) releases WTA from the bacterial envelope and displays a growth defect. Here, we report that the type 5 capsular polysaccharide (CP5) of Staphylococcus aureus Newman is covalently attached to the glycan strands of peptidoglycan. Cell wall attachment of CP5 is abrogated in the Δlcp variant, a defect that is best complemented via expression of lcpC in trans. CP5 synthesis and peptidoglycan attachment are not impaired in the tagO mutant, suggesting that CP5 synthesis does not involve the GlcNAc-ManNAc linkage unit of WTA and may instead utilize another Wzy-type ligase to assemble undecaprenyl-phosphate intermediates. Thus, LCP enzymes of S. aureus are promiscuous enzymes that attach secondary cell wall polymers with discrete linkage units to peptidoglycan.
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Affiliation(s)
- Yvonne Gar-Yun Chan
- From the Department of Microbiology, University of Chicago, Chicago, Illinois 60637 and
| | - Hwan Keun Kim
- From the Department of Microbiology, University of Chicago, Chicago, Illinois 60637 and
| | - Olaf Schneewind
- From the Department of Microbiology, University of Chicago, Chicago, Illinois 60637 and the Howard Taylor Ricketts Laboratory, Argonne National Laboratory, Argonne, Illinois 60439
| | - Dominique Missiakas
- From the Department of Microbiology, University of Chicago, Chicago, Illinois 60637 and the Howard Taylor Ricketts Laboratory, Argonne National Laboratory, Argonne, Illinois 60439
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Münch D, Müller A, Schneider T, Kohl B, Wenzel M, Bandow JE, Maffioli S, Sosio M, Donadio S, Wimmer R, Sahl HG. The lantibiotic NAI-107 binds to bactoprenol-bound cell wall precursors and impairs membrane functions. J Biol Chem 2014; 289:12063-12076. [PMID: 24627484 DOI: 10.1074/jbc.m113.537449] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
The lantibiotic NAI-107 is active against Gram-positive bacteria including vancomycin-resistant enterococci and methicillin-resistant Staphylococcus aureus. To identify the molecular basis of its potency, we studied the mode of action in a series of whole cell and in vitro assays and analyzed structural features by nuclear magnetic resonance (NMR). The lantibiotic efficiently interfered with late stages of cell wall biosynthesis and induced accumulation of the soluble peptidoglycan precursor UDP-N-acetylmuramic acid-pentapeptide (UDP-MurNAc-pentapeptide) in the cytoplasm. Using membrane preparations and a complete cascade of purified, recombinant late stage peptidoglycan biosynthetic enzymes (MraY, MurG, FemX, PBP2) and their respective purified substrates, we showed that NAI-107 forms complexes with bactoprenol-pyrophosphate-coupled precursors of the bacterial cell wall. Titration experiments indicate that first a 1:1 stoichiometric complex occurs, which then transforms into a 2:1 (peptide: lipid II) complex, when excess peptide is added. Furthermore, lipid II and related molecules obviously could not serve as anchor molecules for the formation of defined and stable nisin-like pores, however, slow membrane depolarization was observed after NAI-107 treatment, which could contribute to killing of the bacterial cell.
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Affiliation(s)
- Daniela Münch
- Institute of Medical Microbiology, Immunology and Parasitology, Pharmaceutical Microbiology Section, University of Bonn, 53115 Bonn, Germany.
| | - Anna Müller
- Institute of Medical Microbiology, Immunology and Parasitology, Pharmaceutical Microbiology Section, University of Bonn, 53115 Bonn, Germany
| | - Tanja Schneider
- Institute of Medical Microbiology, Immunology and Parasitology, Pharmaceutical Microbiology Section, University of Bonn, 53115 Bonn, Germany
| | - Bastian Kohl
- Department of Biology of Microorganisms, Ruhr University Bochum, 44780 Bochum, Germany
| | - Michaela Wenzel
- Department of Biology of Microorganisms, Ruhr University Bochum, 44780 Bochum, Germany
| | | | | | | | | | - Reinhard Wimmer
- Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, 9000 Aalborg, Denmark
| | - Hans-Georg Sahl
- Institute of Medical Microbiology, Immunology and Parasitology, Pharmaceutical Microbiology Section, University of Bonn, 53115 Bonn, Germany.
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Ishizaki Y, Hayashi C, Inoue K, Igarashi M, Takahashi Y, Pujari V, Crick DC, Brennan PJ, Nomoto A. Inhibition of the first step in synthesis of the mycobacterial cell wall core, catalyzed by the GlcNAc-1-phosphate transferase WecA, by the novel caprazamycin derivative CPZEN-45. J Biol Chem 2013; 288:30309-30319. [PMID: 23986448 DOI: 10.1074/jbc.m113.492173] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Because tuberculosis is one of the most prevalent and serious infections, countermeasures against it are urgently required. We isolated the antitubercular agents caprazamycins from the culture of an actinomycete strain and created CPZEN-45 as the most promising derivative of the caprazamycins. Herein, we describe the mode of action of CPZEN-45 first against Bacillus subtilis. Unlike the caprazamycins, CPZEN-45 strongly inhibited incorporation of radiolabeled glycerol into growing cultures and showed antibacterial activity against caprazamycin-resistant strains, including a strain overexpressing translocase-I (MraY, involved in the biosynthesis of peptidoglycan), the target of the caprazamycins. By contrast, CPZEN-45 was not effective against a strain overexpressing undecaprenyl-phosphate-GlcNAc-1-phosphate transferase (TagO, involved in the biosynthesis of teichoic acid), and a mutation was found in the tagO gene of the spontaneous CPZEN-45-resistant strain. This suggested that the primary target of CPZEN-45 in B. subtilis is TagO, which is a different target from that of the parent caprazamycins. This suggestion was confirmed by evaluation of the activities of these enzymes. Finally, we showed that CPZEN-45 was effective against WecA (Rv1302, also called Rfe) of Mycobacterium tuberculosis, the ortholog of TagO and involved in the biosynthesis of the mycolylarabinogalactan of the cell wall of M. tuberculosis. The outlook for WecA as a promising target for the development of antituberculous drugs as a countermeasure of drug resistant tuberculosis is discussed.
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Affiliation(s)
- Yoshimasa Ishizaki
- From the Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23, Kamiosaki, Shinagawa-ku, Tokyo, Japan,.
| | - Chigusa Hayashi
- From the Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23, Kamiosaki, Shinagawa-ku, Tokyo, Japan
| | - Kunio Inoue
- From the Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23, Kamiosaki, Shinagawa-ku, Tokyo, Japan
| | - Masayuki Igarashi
- From the Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23, Kamiosaki, Shinagawa-ku, Tokyo, Japan
| | - Yoshiaki Takahashi
- the Institute of Microbial Chemistry (BIKAKEN), Hiyoshi, 3-34-17, Ida, Nakahara-ku, Kawasaki, Kanagawa, Japan, and
| | - Venugopal Pujari
- the Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682
| | - Dean C Crick
- the Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682
| | - Patrick J Brennan
- the Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682
| | - Akio Nomoto
- From the Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23, Kamiosaki, Shinagawa-ku, Tokyo, Japan
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