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Shtratnikova VY, Belalov I, Kasianov AS, Schelkunov MI, Logacheva Maria DA, Novikov AD, Shatalov AA, Gerasimova TV, Yanenko AS, Makeev VJ. The complete genome of the oil emulsifying strain Thalassolituus oleivorans K-188 from the Barents Sea. Mar Genomics 2018; 37:18-20. [PMID: 33250120 DOI: 10.1016/j.margen.2017.08.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 08/17/2017] [Indexed: 11/16/2022]
Abstract
Gammaproteobacterium Thalassolituus oleivorans plays an important role in oil degradation in sea water through emulsifying crude oil and alkanes at low temperatures in polar sea environment. Here we report the complete genome sequence of K-188 strain (VKPM B-9394) isolated in the Barents Sea and compare it with other known Thalassolituus oleivorans strains. The Thalassolituus strains are differed in orthologs number of the genes of alkane degradation, transport proteins, genes of sugar utilization, endonucleases, signaling proteins, transcriptional regulators and presence of CRISPR/Cas locus. Also only the genome of K-188 contains the 3-hydroxyalkanoate synthetase.
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Affiliation(s)
- Victoria Yu Shtratnikova
- A.N. Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State University, Leninskye gory, h. 1, b. 40, Moscow 119991, Russian Federation.
| | - Ilya Belalov
- Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave., h. 33, b. 2, Moscow 119071, Russian Federation.
| | - Artem S Kasianov
- Vavilov Institute of General Genetics, Gubkina str., h. 3, Moscow 119991, Russian Federation.
| | - Mikhail I Schelkunov
- A.N. Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State University, Leninskye gory, h. 1, b. 40, Moscow 119991, Russian Federation; Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoy Karetny per., h. 19, b. 1, Moscow 127051, Russian Federation.
| | - D A Logacheva Maria
- A.N. Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State University, Leninskye gory, h. 1, b. 40, Moscow 119991, Russian Federation.
| | - Andrey D Novikov
- State Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., h. 1, Moscow 117545, Russian Federation.
| | - Alexey A Shatalov
- State Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., h. 1, Moscow 117545, Russian Federation.
| | - Tatyana V Gerasimova
- State Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., h. 1, Moscow 117545, Russian Federation
| | - Alexander S Yanenko
- State Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., h. 1, Moscow 117545, Russian Federation.
| | - Vsevolod J Makeev
- Vavilov Institute of General Genetics, Gubkina str., h. 3, Moscow 119991, Russian Federation; State Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., h. 1, Moscow 117545, Russian Federation; Moscow Institute of Physics and Technology, 9 Institutskiy per., Dolgoprudny, Moscow Region 141700, Russian Federation.
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