Bioherbicides for sustainable barnyard grass management in paddy field: an in-silico perspective

Paddy (Oryza sativa) yield is greatly influenced by the insidious presence of rice-mimicking weed, widely known as barnyard grass. This study explores the promising natural ACCase inhibitors that could enhance paddy yield by controlling weeds. A total of 2828 natural compounds were examined using diverse computational techniques. The results of this study depict that CNP0390839 (xanthoangelol) exhibited a better XP Gscore (-7.328 kcal/mol) and MM/GBSA score (-84.24 kcal/mol) than other investigated compounds. Importantly, ACCase-xanthoangelol complexes was thermodynamically stable with an RMSD value of ∼1.2 nm. Of note, 72% xanthoangelol resides in the Angelica keiskei plant root which exhibits 55% weed-inhibitory action. The A. keiskei plant mainly inhibits the hypocotyl (71.8 ± 5.4%) and root region (55.3 ± 4.7%) of weeds. Moreover, the existence of dihydroxyphenyl scaffold in xanthoangelol was also witnessed in literatures for weed inhibitory action. Overall, xanthoangelol might prove to be an effective ACCase herbicide in paddy weed management.

Epiphytic and Endophytic Fungi Colonizing Seeds of Two Poaceae Weed Species and Fusarium spp. Seed Degradation Potential In Vitro

Fungi colonizing the surface and endosphere of two widespread Poaceae weed species, Avena fatua and Echinochloa crus-galli, were isolated to compare the taxonomic composition between the plant species, location, and year of the seed collection. The seed-degrading potential of Fusarium isolated from the seeds was tested by inoculating seeds of E. crus-galli with spore suspension. Molecular identification of epiphytic and endophytic fungal genera was performed by sequencing the ITS region of rDNA. Endophytes comprised of significantly lower fungal richness compared to epiphytes. A significant taxonomic overlap was observed between the endosphere and seed surface. The most abundant genera were Alternaria, Fusarium, Cladosporium, and Sarocladium. Analysis of similarities and hierarchical clustering showed that microbial communities were more dissimilar between the two plant species than between the years. Fusarium isolates with a high potential to infect and degrade E. crus-galli seeds in laboratory conditions belong to F. sporotrichioides and F. culmorum.

Herbicidal activity of atrazine to barnyard grass depends upon soil characteristics

BACKGROUND

The efficacy of a herbicide as soil treatment agent may be largely affected by soil characteristics. Understanding the relationship between herbicide efficacy and soil characteristics can provide decision basis for herbicide application according to local conditions. This study was aimed towards exploring the effect of soil characteristics on herbicidal activity of atrazine as a model herbicide to barnyard grass and thus to find an indicator for the herbicidal activity assessment of a herbicide against weeds.

RESULTS

The herbicidal activity of atrazine to barnyard grass varied greatly among the tested soils with the medium inhibition concentration (IC₅₀ ), based on the amended concentration, ranging from 1.07 to 10.91 mg kg^-1 . Uptake of atrazine by barnyard grass was negatively correlated with its adsorption onto soils, whereas it was positively related to the concentration of the herbicide in in situ pore water (C_IPW ). Comparable IC₅₀ values ranging from 1.14 to 1.38 were obtained from C_IPW in the tested soils with much smaller variation coefficient compared to those based on the traditional concentration (C_soil ) of this herbicide in soils determined by extraction with organic solvents.

CONCLUSION

The concentration of atrazine in in situ pore water could be reliable to evaluate its bioavailability and herbicidal activity to barnyard grass. C_IPW of a herbicide in soil could be an indicator for guiding the practical application rate. © 2022 Society of Chemical Industry.

Target-Site Mutations and Expression of ALS Gene Copies Vary According to Echinochloa Species

The sustainability of rice cropping systems is jeopardized by the large number and variety of populations of polyploid Echinochloa spp. resistant to ALS inhibitors. Better knowledge of the Echinochloa species present in Italian rice fields and the study of ALS genes involved in target-site resistance could significantly contribute to a better understanding of resistance evolution and management. Using a CAPS-rbcL molecular marker, two species, E. crus-galli (L.) P. Beauv. and E. oryzicola (Vasinger) Vasing., were identified as the most common species in rice in Italy. Mutations involved in ALS inhibitor resistance in the different species were identified and associated with the ALS homoeologs. The relative expression of the ALS gene copies was evaluated. Molecular characterization led to the identification of three ALS genes in E. crus-galli and two in E. oryzicola. The two species also carried different point mutations conferring resistance: Ala122Asn in E. crus-galli and Trp574Leu in E. oryzicola. Mutations were carried in the same gene copy (ALS1), which was significantly more expressed than the other copies (ALS2 and ALS3) in both species. These results explain the high resistance level of these populations and why mutations in the other ALS copies are not involved in herbicide resistance.

Synthesis Candidates Herbicide Through Optimization Quinclorac Containing 3-Methyl-1H-pyrazol-5-yl

To enhance quinclorac potency, twenty-five derivatives were synthesized containing 3-methyl-1H-pyrazol-5-yl by intermediate derivatization methods (IDMs). These compounds were confirmed by melting point (mp), ¹HNMR, ¹³CNMR, and HRMS. The compound 1,3-dimethyl-1H-pyrazol-5-yl 3,7-dichloroquinoline-8-carboxylate (10a) was determined by X-ray diffraction. The activity of these compounds substituent on the phenyl was: electron-drawing group > neutral group > donor-drawing group, the results was like that of substituted benzyl group on pyrazole. The herbicidal activity assays showed that compounds 1-(2-fluorophenyl)-3-methyl-1H-pyrazol-5-yl 3,7-dichloroquinoline-8-carboxylate (8l, EC₅₀ = 10.53 g/ha) and 10a (EC₅₀ = 10.37 g/ha) had an excellent inhibition effect on barnyard grass in greenhouse experiment. Greenhouse safety experiment of rice exhibited almost no difference in plant height and fresh weight treated 10a at stage 1∼2-leaf of rice after 14 days but 8l had a detrimental effect. Two season field assays showed 10a herbicidal activity on barnyard grass at 150 g/ha as equal as 300 g/ha quinclorac in fields in 2019 and 2020. The study demonstrated that 10a could be further researched as a potential herbicide to control barnyard grass in fields.

Enantioselective and Synergistic Herbicidal Activities of Common Amino Acids Against Amaranthus tricolor and Echinochloa crus-galli

Amino acids have a wide range of biological activities, which usually rely on the stereoisomer presented. In this study, glycine and 21 common α-amino acids were investigated for their herbicidal property against Chinese amaranth (Amaranthus tricolor L.) and barnyard grass (Echinochloa crus-galli (L.) Beauv.). Both d- and l-isomers, as well as a racemic mixture, were tested and found that most compounds barely inhibited germination but moderately suppressed seedling growth. Various ratios of d:l-mixture were studied and synergy between enantiomers was found. For Chinese amaranth, the most toxic d:l-mixtures were at 3:7 (for glutamine), 8:2 (for methionine), and 5:5 (for tryptophan). For barnyard grass, rac-glutamine was more toxic than the pure forms; however, d-tryptophan exhibited greater activity than racemate and l-isomer, indicating the sign of enantioselective toxicity. The mode of action was unclear, but d-tryptophan caused bleaching of leaves, indicating pigment synthesis of the grass was inhibited. The results highlighted the enantioselective and synergistic toxicity of some amino acids, which relied upon plant species, chemical structures, and concentrations. Overall, our finding clarifies the effect of stereoisomers, and provides a chemical clue of amino acid herbicides, which may be useful in the development of herbicides from natural substances.

Distribution of Glyphosate-Resistance in Echinochloa crus-galli Across Agriculture Areas in the Iberian Peninsula

The levels of resistance to glyphosate of 13 barnyard grass (Echinochloa crus-galli) populations harvested across different agriculture areas in the Southern Iberian Peninsula were determined in greenhouse and laboratory experiments. Shikimate accumulation fast screening separated the populations regarding resistance to glyphosate: susceptible (S) E2, E3, E4, and E6 and resistant (R) E1, E5, E7, E8, E9, E10, E11, E12, and E13. However, resistance factor (GR₅₀ E1-E13/GR₅₀ E6) values separated these populations into three groups: (S) E2, E3, E4, and E6, (R) E1, E5, E7, E8, and E9, and very resistant (VR) E10, E11, E12, and E13. ¹⁴C-glyphosate assays performed on two S populations (E2 and E6) showed greater absorption and translocation than those found for R (E7 and E9) and VR (E10 and E12) populations. No previous population metabolized glyphosate to amino methyl phosphonic acid (AMPA) and glyoxylate, except for the E10 population that metabolized 51% to non-toxic products. The VR populations showed two times more 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) activity without herbicide than the rest, while the inhibition of the EPSPS activity by 50% (I₅₀) required much higher glyphosate in R and VR populations than in S populations. These results indicated that different target-site and non-target-site resistance mechanisms were implicated in the resistance to glyphosate in E. crus-galli. Our results conclude that resistance is independent of climate, type of crop, and geographic region and that the level of glyphosate resistance was mainly due to the selection pressure made by the herbicide on the different populations of E. crus-galli studied.

Potential Role of Lolium multiflorum Lam. in the Management of Rice Weeds

The phytotoxic relationships between crops and weeds can cover a role in weed management, reducing the use of chemical herbicides. Starting from the organic farmers’ experience, the study aimed to define the inhibitory action of Lolium multiflorum Lam., used as a cover crop before rice sowing, against Echinochloa oryzoides (Ard.) Fritsch, one of the main rice weeds. In vitro 7-day assays were carried out in Petri dishes to compare the effect of different L. multiflorum Lam. parts, in the form of aqueous extract or powder, on the seed germination and seedling growth of Oryza sativa L. and E. oryzoides and to verify the hypothesis of a higher susceptibility of the weed. The total polyphenolic content, as the potential source of allelochemicals, in the L. multiflorum parts was measured. The results showed that both species suffer the phytotoxic action of L. multiflorum, but a more marked effect against E. oryzoides was recorded. In according with the polyphenol quantities, stem and inflorescence extracts showed the more significant species-specific inhibition. In all assays, the weed showed a stronger reduction in the root length and seedling vigor index, and, in some cases, also in the germination percentage and shoot length compared to rice.

Inhibitory Activities of Momilactones A, B, E, and 7-Ketostigmasterol Isolated from Rice Husk on Paddy and Invasive Weeds

Rice husk has been exploited as a potential source of allelochemicals. In this study, four bioactive compounds including momilactone E (ME), 7-ketostigmasterol (7KS), momilactone A (MA), and momilactone B (MB) were isolated by column chromatography (CC) to yield 2.7, 0.3, 11.7, and 8.3 mg/kg rice husk, respectively. The structures of the isolated compounds were identified and confirmed by spectroscopic techniques consisting of ¹H and ¹³C nuclear magnetic resonance (NMR), electrospray ionization mass (ESI), high-resolution mass spectrometry (HR-MS) and infrared spectroscopy (IS). An advanced quantitative method for MA and MB was achieved to increase the detectable yields of MA and MB in rice husk to 51.96 and 42.33 µg/mL, respectively. The inhibitory activities of MA, MB, ME, and 7KS were examined on lettuce (Lactuca sativa), barnyard grass (Echinochloa crus-galli), and tall goldenrod (Solidago altissima) in bioassays. The allelopathic activities of ME and 7KS were compared with those of potent phytoalexin momilactones A (MA) and B (MB), and the standard p-hydroxybenzoic acid (pHA). Results showed that both MA and MB exhibited stronger inhibitory activity than ME and 7KS. MB exerted greater inhibitions than MA but the mixture of MA and MB (1:1, v/v) possessed a similar level of inhibition to MB. On the other hand, although ME and 7KS presented non-significant inhibition, their mixture of ME-7KS (1:1, v/v) displayed a remarkable inhibition on the growth of S. altissima. Findings of this study revealed that MA, MB, and the mixture ME-7KS had the potential to control the invasive plant S. altissima and the noxious paddy weed E. crus-galli in vitro, but their mode of actions should be further investigated.

Development of a rice herbicide, ipfencarbazone

Hokko Chemical Industry Co., Ltd. found a novel triazolinone class herbicide regarded as 1-aryl-4-carbamoyl-1,2,4-triazolinone derivatives that shows high level of safety to paddy rice, and high activity and long residual activity against Echinochloa spp. and other weeds. We selected a new paddy rice herbicide ipfencarbazone as the optimum compound. Ipfencarbazone is a pre-emergence and early post-emergence rice herbicide that controls annual grass weeds, annual sedge weeds and some annual broadleaf weeds at a rate of 250 g a.i./ha. It inhibits the biosynthesis of fatty acids in plants (VLCFA). Two formulations containing ipfencarbazone, Winner® and Fighter®, have been registered in Japan since 2013 and various combinations have been launched.

Competitive and Allelopathic Effects of Wild Rice Accessions (Oryza longistaminata) at Different Growth Stages

The competitive and allelopathic effects of wild rice (Oryza longistaminata) accessions on barnyard grass at different growth stages determined by days after sowing (0, 30, 60 and 90 days) were studied in greenhouse pot experiments. Wild rice accession RL159 exhibited the greatest height and tillering. The weed suppression rates of wild rice accessions OL and F1 on barnyard grass were significantly higher than for other rice accessions, with the lowest being O. sativa cultivar RD23. The highest suppression rates of OL and F1 were 80.23 and 73.96% at barnyard grass growth stages of 90 days and 60 days. At a 90 growth stage, wild rice accessions RL159 and RL169 caused 61.33 and 54.51% inhibition in barnyard grass growth, respectively. Under the same conditions, the competitive inhibition rates of OL, F1, RL159, RL169 and RL219 against barnyard grass were markedly lower than their weed suppressive effects, but were relatively similar for RD23. The allelopathic inhibition of OL and F1 on barnyard grass was significantly higher than other rice accessions. The highest allelopathic rates of OL and F1 were 60.61 and 56.87% at the 0 day growth stage. It is concluded that wild rice accessions OL and F1 exhibited the highest allelopathic activity along with moderate competitive ability against barnyard grass; wild rice accession RL159 had the highest competitive ability and moderate allelopathic activity on barnyard grass. Thus, the three wild rice accessions OL, F1 and RL159 could be used as ideal breeding materials for cultivated rice improvement.

Differences in responses to flooding by germinating seeds of two contrasting rice cultivars and two species of economically important grass weeds

Crop productivity is largely affected by abiotic factors such as flooding and by biotic factors such as weeds. Although flooding after direct seeding of rice helps suppress weeds, it also can adversely affects germination and growth of rice, resulting in poor crop establishment. Barnyard grasses (Echinochloa spp.) are among the most widespread weeds affecting rice, especially under direct seeding. The present work aimed to establish effective management options to control these weeds. We assessed the effects of variable depths and time of submergence on germination, seedling growth and carbohydrate metabolism of (i) two cultivars of rice known to differ in their tolerance to flooding during germination and (ii) two barnyard grasses (Echinochloa colona and E. crus-galli) that commonly infest rice fields. Flooding barnyard grasses with 100-mm-deep water immediately after seeding was effective in suppressing germination and growth. Echinochloa colona showed greater reductions in emergence, shoot and root growth than E. crus-galli. Delaying flooding for 2 or 4 days was less injurious to both species. Echinochloa colona was also more susceptible to flooding than the flood-sensitive rice cultivar 'IR42'. The activity of alcohol dehydrogenase (ADH) and pyruvate decarboxylase (PDC) in rice seedlings was increased by flooding after sowing but with greater increases in 'Khao Hlan On' compared with 'IR42'. The activity of ADH and PDC was enhanced to a similar extent in both barnyard grasses. Under aerobic conditions, the activity of ADH and PDC in the two barnyard grasses was downregulated, which might contribute to their inherently faster growth compared with rice. Aldehyde dehydrogenase activity was significantly enhanced in flood-tolerant 'Khao Hlan On' and E. crus-galli, but did not increase in flood-sensitive E. colona and 'IR42', implying a greater ability of the flood-tolerant types to detoxify acetaldehyde generated during anaerobic fermentation. Confirmation of this hypothesis is now being sought.

Effect of Dew Period and Temperature on the Ability of Exserohilum monoceras to Cause Seedling Mortality of Echinochloa Species

In greenhouse and controlled environment experiments, disease development and mortality of Echinochloa crus-galli, E. colona, and E. glabrescens caused by Exserohilum monoceras were affected by duration, frequency, and timing of dew period, as well as by dew-period temperature and post-dew temperature. When adequate dew was provided, 100% mortality occurred for all three Echinochloa spp. over the broad dew-period temperature range of 20 to 30°C. The effect of post-dew temperature on disease development varied with the initial dew period. The minimum dew period to achieve 100% mortality was 16 h for E. colona, 12 h for E. crus-galli, and 8 h for E. glabrescens. Increasing dew period enlarged the range of temperature for maximum efficacy, whereas the use of optimum dew-period temperature decreased the dew period requirement. Delaying the initiation of the dew period by 24 h did not adversely affect disease development. Increased disease development occurred for inoculated seedlings treated with repetitive dew periods of shorter duration than the optimal period. These findings characterize one of the epidemiological requirements, i.e., dew requirement, needed to assess the potential of E. monoceras for the control of Echinochloa spp. in rice.

Heterodera graminophila n. sp. (Nematoda Heteroderae) from Grass with a Key to Closely Related Species

Heterodera graminophila n. sp., a member of the H. goettingiana group, is described and illustrated from roots of barnyard grass, Echinochloa colonum (L.) Link, in Baton Rouge, La. This new abullate species, having second-stage larvae with only three lines in the lateral field, is most closely related to H. cyperi Golden, Rau &Cobb, 1962, and H. graminis Stynes, 1971, but differs particularly in having a small, inconspicuous anus without a circum-anal pattern and located about 20% of the cyst length from the vulval cone terminus, and a longer vulval slit averaging 45 mu in length. A key, based on cyst and larval characters, is presented for identification of the 10 Heterodera species in the H. goettingiana group.