Study on the Mechanism of Lipid Peroxidation Induced by Carbonate Radicals

Based on the reported research, hydroxyl radicals can be rapidly transformed into carbonate radicals in the carbonate-bicarbonate buffering system in vivo. Many of the processes considered to be initiated by hydroxyl radicals may be caused by carbonate radicals, which indicates that lipid peroxidation initiated by hydroxyl radicals can also be caused by carbonate radicals. To date, theoretical research on reactions of hydrogen abstraction from and radical addition to polyunsaturated fatty acids (PUFAs) of carbonate radicals has not been carried out systematically. This paper employs (3Z,6Z)-nona-3,6-diene (NDE) as a model for polyunsaturated fatty acids (PUFAs). Density functional theory (DFT) with the CAM-B3LYP method at the 6-311+g(d,p) level was used to calculate the differences in reactivity of carbonate radicals abstracting hydrogen from different positions of NDE and their addition to the double bonds of NDE under lipid solvent conditions with a dielectric constant of 4.0 (CPCM model). Grimme's empirical dispersion correction was taken into account through the D3 scheme. The energy barrier, reaction rate constants, internal energy, enthalpy and Gibbs free energy changes in these reactions were calculated With zero-point vibrational energy (ZPVE) corrections. The results indicated that carbonate radicals initiate lipid peroxidation primarily through hydrogen abstraction from diallyl carbon atoms. The reaction of hydrogen abstraction from diallyl carbon atoms exhibits the highest reaction rate, with a reaction rate constant approximately 43-fold greater than the second-ranked hydrogen abstraction from allyl carbon atoms. This process has the lowest energy barrier, internal energy, enthalpy, and Gibbs free energy changes, indicating that it is also the most spontaneous process.

Effect of bicarbonate on nitrate-induced photosensitive degradation of sulfamethoxazole under UV irradiation

In this study, the influence of HCO3- on NO3--induced photosensitive degradation of sulfamethoxazole (SMX) under UV irradiation was investigated. It was found that the removal of SMX by UV in the presence of NO3- improved significantly compared to its photolysis, which was confirmed to be due to the role of hydroxyl radical (HO•) formed through UV-activated NO3-. However, the addition of HCO3- in UV/NO3- system could further enhance SMX degradation, which was verified to be ascribed to the formed carbonate radical (CO3•-) through the reaction of HCO3- with HO•. The second-order rate constant of CO3•- with SMX was determined to be 2.58 × 108 M-1 s-1. In UV/NO3-/HCO3- system, the reactive species for SMX removal were HO• and CO3•-, and the contribution of CO3•- to SMX degradation might be much higher than that of HO•. The concentration of NO3- was almost unchanged after reaction in UV/NO3- and UV/NO3-/HCO3- systems because of its regeneration. Based on the detected four transformation products, the possible degradation pathways of SMX in UV/NO3-/HCO3- system were proposed including hydroxylation, amino-oxidation and bond cleavage.

Impact of Reaction Parameters and Water Matrices on the Removal of Organic Pollutants by TiO2/LED and ZnO/LED Heterogeneous Photocatalysis Using 365 and 398 nm Radiation

In this work, the application of high-power LED_365nm and commercial, low-price LED_398nm for heterogeneous photocatalysis with TiO₂ and ZnO photocatalysts are studied and compared, focusing on the effect of light intensity, photon energy, quantum yield, electrical energy consumption, and effect of matrices and inorganic components on radical formation. Coumarin (COU) and its hydroxylated product (7-HC) were used to investigate operating parameters on the ^•OH formation rate. In addition to COU, two neonicotinoids, imidacloprid and thiacloprid, were also used to study the effect of various LEDs, matrices, and inorganic ions. The transformation of COU was slower for LED_398nm than for LED_365nm, but r₀^7-HC/r₀^COU ratio was significantly higher for LED_398nm. The COU mineralization rate was the same for both photocatalysts using LED_365nm, but a significant difference was observed using LED_398nm. The impact of matrices and their main inorganic components Cl^- and HCO₃^- were significantly different for ZnO and TiO₂. The negative effect of HCO₃^- was evident, however, in the case of high-power LED_365nm and TiO₂, and the formation of CO₃^•- almost doubled the r₀^7-HC and contributes to the conversion of neonicotinoids by altering the product distribution and mineralization rate.

Construction of TiO2-Eggshell for Efficient Degradation of Tetracycline Hydrochloride: Sunlight Induced In-Situ Formation of Carbonate Radical

Photocatalytic degradation of an antibiotic by utilizing inexhaustible solar energy represents an ideal solution for tackling global environment issues. The target generation of active oxidative species is highly desirable for the photocatalytic pollutants degradation. Herein, aiming at the molecular structure of tetracycline hydrochloride (TC), we construct sunlight-activated high-efficient catalysts of TiO₂-eggshell (TE). The composite ingeniously utilizes the photoactive function of TiO₂ and the composition of eggshell, which can produce oxidative ·CO₃⁻ species that are especially active for the degradation of aromatic compounds containing phenol or aniline structures. Through the synergistic oxidation of the··CO₃⁻ with the traditional holes (h⁺), superoxide radicals (·O²⁻) and hydroxyl radicals (·OH) involved in the photocatalytic process, the optimal TE photocatalyst degrades 92.0% TC in 30 min under solar light, which is higher than TiO₂ and eggshell. The photocatalytic degradation pathway of TC over TE has been proposed. The response surface methodology is processed by varying four independent parameters (TC concentration, pH, catalyst dosage and reaction time) on a Box–Behnken design (BBD) to optimize the experimental conditions. It is anticipated that the present work can facilitate the development of novel photocatalysts for selective oxidation based on ·CO₃⁻.

Neighboring base sequence effect on DNA damage

Guanine is the most strongly oxidized base in DNA; generation of a guanine radical cation as an intermediate in an oxidation reaction leads to migration through a resulting cationic hole in the DNA π-stack until it is trapped by irreversible reaction with water or other free radicals. In the case of normal sequences, the primary position of Guanine oxidations by one-electron oxidants such as carbonate radical anions, BPT(7,8,9,10-tetrahydroxytetrahydrobenzo[a]pyrene), and riboflavin are 5'-G in GG doublets and the central G in a GGG triplet. According to results, the properties of guanine oxidation on abasic site containing sequences are independent from the position of AP(apurinic/apyrimidinic) site in the presence of carbonate radical anions under a short irradiation time, although this radical is exposed to solvent by the existence of an abasic site. The lack of abasic site effect on guanine oxidative damage by the carbonate radical may be due to a sequence-independent property of the initial electron transfer rate in the hole injection step, or may relate to an electron transfer mechanism with large reorganization energy dependency. Consequently, the carbonate radical anions may easily migrate to another single G in the charge re-distribution step. Meanwhile, there is a strong dependency on the presence of an AP(apurinic/apyrimidinic) site in the cleavage patterns of guanine oxidations by physically large oxidizing agents, such as BPT(7,8,9,10-tetrahydroxytetrahydrobenzo[a]pyrene) and riboflavin. These radicals show strong AP(apurinic/apyrimidinic) site dependency and clear G-site selectivity.Communicated by Ramaswamy H. Sarma.

Efficacy and site specificity of hydrogen abstraction from DNA 2-deoxyribose by carbonate radicals

The carbonate radical anion CO(3)(•-) is a potent reactive oxygen species (ROS) produced in vivo through enzymatic one-electron oxidation of bicarbonate or, mostly, via the reaction of CO(2) with peroxynitrite. Due to the vitally essential role of the carbon dioxide/bicarbonate buffer system in regulation of physiological pH, CO(3)(•-) is arguably one of the most important ROS in biological systems. So far, the studies of reactions of CO(3)(•-) with DNA have been focused on the pathways initiated by oxidation of guanines in DNA. In this study, low-molecular products of attack of CO(3)(•-) on the sugar-phosphate backbone in vitro were analyzed by reversed phase HPLC. The selectivity of damage in double-stranded DNA (dsDNA) was found to follow the same pattern C4' > C1' > C5' for both CO(3)(•-) and the hydroxyl radical, though the relative contribution of the C1' damage induced by CO(3)(•-) is substantially higher. In single-stranded DNA (ssDNA) oxidation at C1' by CO3(•-) prevails over all other sugar damages. An approximately 2000-fold preference for 8-oxoguanine (8oxoG) formation over sugar damage found in our study identifies CO(3)(•-) primarily as a one-electron oxidant with fairly low reactivity toward the sugar-phosphate backbone.

Solvent exposure associated with single abasic sites alters the base sequence dependence of oxidation of guanine in DNA in GG sequence contexts

The effect of exposure of guanine in double-stranded oligonucleotides to aqueous solvent during oxidation by one-electron oxidants was investigated by introducing single synthetic tetrahydrofuran-type abasic sites (Ab) either adjacent to or opposite tandem GG sequences. The selective oxidation of guanine was initiated by photoexcitation of the aromatic sensitizers riboflavin and a pyrene derivative, and by the relatively small negatively charged carbonate radical anion. The relative rates of oxidation of the 5'- and 3' side G in runs of 5'⋅⋅⋅GG⋅⋅⋅ (evaluated by standard hot alkali treatment of the damaged DNA strand followed by high resolution gel electrophoresis of the cleavage fragments) are markedly affected by adjacent abasic sites either on the same or opposite strand. For example, in fully double-stranded DNA or one with an Ab adjacent to the 5'-G, the 5'-G/3'-G damage ratio is ≥4, but is inverted (<1.0) with the Ab adjacent to the 3'-G. These striking effects of Ab are attributed to the preferential localization of the "hole" on the most solvent-exposed guanine regardless of the size, charge, or reduction potential of the oxidizing species.