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Prochazkova M, Budinska E, Kuzma M, Pelantova H, Hradecky J, Heczkova M, Daskova N, Bratova M, Modos I, Videnska P, Splichalova P, Sowah SA, Kralova M, Henikova M, Selinger E, Klima K, Chalupsky K, Sedlacek R, Landberg R, Kühn T, Gojda J, Cahova M. Vegan Diet Is Associated With Favorable Effects on the Metabolic Performance of Intestinal Microbiota: A Cross-Sectional Multi-Omics Study. Front Nutr 2022; 8:783302. [PMID: 35071294 PMCID: PMC8777108 DOI: 10.3389/fnut.2021.783302] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Accepted: 11/25/2021] [Indexed: 12/14/2022] Open
Abstract
Background and Aim: Plant-based diets are associated with potential health benefits, but the contribution of gut microbiota remains to be clarified. We aimed to identify differences in key features of microbiome composition and function with relevance to metabolic health in individuals adhering to a vegan vs. omnivore diet. Methods: This cross-sectional study involved lean, healthy vegans (n = 62) and omnivore (n = 33) subjects. We assessed their glucose and lipid metabolism and employed an integrated multi-omics approach (16S rRNA sequencing, metabolomics profiling) to compare dietary intake, metabolic health, gut microbiome, and fecal, serum, and urine metabolomes. Results: The vegans had more favorable glucose and lipid homeostasis profiles than the omnivores. Long-term reported adherence to a vegan diet affected only 14.8% of all detected bacterial genera in fecal microbiome. However, significant differences in vegan and omnivore metabolomes were observed. In feces, 43.3% of all identified metabolites were significantly different between the vegans and omnivores, such as amino acid fermentation products p-cresol, scatole, indole, methional (lower in the vegans), and polysaccharide fermentation product short- and medium-chain fatty acids (SCFAs, MCFAs), and their derivatives (higher in the vegans). Vegan serum metabolome differed markedly from the omnivores (55.8% of all metabolites), especially in amino acid composition, such as low BCAAs, high SCFAs (formic-, acetic-, propionic-, butyric acids), and dimethylsulfone, the latter two being potential host microbiome co-metabolites. Using a machine-learning approach, we tested the discriminative power of each dataset. Best results were obtained for serum metabolome (accuracy rate 91.6%). Conclusion: While only small differences in the gut microbiota were found between the groups, their metabolic activity differed substantially. In particular, we observed a significantly different abundance of fermentation products associated with protein and carbohydrate intakes in the vegans. Vegans had significantly lower abundances of potentially harmful (such as p-cresol, lithocholic acid, BCAAs, aromatic compounds, etc.) and higher occurrence of potentially beneficial metabolites (SCFAs and their derivatives).
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Affiliation(s)
- Magdalena Prochazkova
- Department of Internal Medicine, Kralovske Vinohrady University Hospital and Third Faculty of Medicine, Charles University, Prague, Czechia
| | - Eva Budinska
- Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czechia
| | - Marek Kuzma
- Laboratory of Molecular Structure Characterization, Institute of Microbiology, Czech Academy of Sciences, Prague, Czechia
| | - Helena Pelantova
- Laboratory of Molecular Structure Characterization, Institute of Microbiology, Czech Academy of Sciences, Prague, Czechia
| | - Jaromir Hradecky
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Prague, Czechia
| | - Marie Heczkova
- Center of Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czechia
| | - Nikola Daskova
- Center of Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czechia.,First Faculty of Medicine, Charles University, Prague, Czechia
| | - Miriam Bratova
- Center of Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czechia
| | - Istvan Modos
- Center of Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czechia
| | - Petra Videnska
- Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czechia
| | - Petra Splichalova
- Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czechia
| | - Solomon A Sowah
- Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.,Medical Faculty and University Hospital, Heidelberg University, Heidelberg, Germany
| | - Maria Kralova
- Department of Applied Mathematics and Computer Science, Masaryk University, Brno, Czechia
| | - Marina Henikova
- Department of Internal Medicine, Kralovske Vinohrady University Hospital and Third Faculty of Medicine, Charles University, Prague, Czechia
| | - Eliska Selinger
- Department of Internal Medicine, Kralovske Vinohrady University Hospital and Third Faculty of Medicine, Charles University, Prague, Czechia
| | - Krystof Klima
- Czech Centre for Phenogenomics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czechia
| | - Karel Chalupsky
- Czech Centre for Phenogenomics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czechia
| | - Radislav Sedlacek
- Czech Centre for Phenogenomics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czechia
| | - Rikard Landberg
- Division of Food and Nutrition Science, Department of Biology and Biological Engineering, Chalmers University of Technology, Goteborg, Sweden
| | - Tilman Kühn
- Institute of Global Food Security, Queen's University Belfast, Belfast, United Kingdom.,Heidelberg Institute of Global Health (HIGH), Medical Faculty and University Hospital, Heidelberg University, Heidelberg, Germany
| | - Jan Gojda
- Department of Internal Medicine, Kralovske Vinohrady University Hospital and Third Faculty of Medicine, Charles University, Prague, Czechia
| | - Monika Cahova
- Center of Experimental Medicine, Institute for Clinical and Experimental Medicine, Prague, Czechia
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