A genome-wide association study reveals a quantitative trait locus for calf mortality on chromosome 9 in Japanese Black cattle

Calf mortality is a major problem affecting cattle production. To identify genetic variants associated with calf mortality in Japanese Black cattle, we evaluated calf mortality as a categorical trait using a threshold model and conducted a GWAS. We identified two SNPs between 32 549 297 and 32 606 924 bp on bovine chromosome 9 that were significantly associated with calf mortality from 61 to 180 days after birth. The SNP showing the highest association was localized at a region 624 bp downstream of exon 4 of the anti-silencing function 1A histone chaperone gene (ASF1A) that promotes DNA damage repair, and the null mice, which exhibit pre- and postnatal lethality. This association was also detected using the breeding value of 334 sires. The frequency of the risk allele in Japanese Black cattle from locations across Japan was 0.013; although the frequency of ASF1A risk allele was low, it is widespread in the Japanese Black cattle population. Thus, it may be necessary to routinely monitor the cattle population for the presence of this allele.

Short communication: Replacement heifer mortality from weaning until second mating in seasonal-calving, pasture-based dairy herds in New Zealand

The primary aim of this prospective study was to determine the postnatal mortality risk of replacement dairy heifers from weaning until the start of their second mating period (∼27 mo of age) in seasonal-calving, pasture-based dairy herds. Data were analyzed from 24 farms from the Waikato (n = 15) and Canterbury (n = 9) regions of New Zealand. All animals included in the study had an identified weaning date. From this point onward, data on animals that were euthanized, died unassisted, were culled, or were sold were recorded by the farmer on the home farm or by the grazier, according to animal location, and validated using calving, mating, culling, and sold records in their herd improvement database (MINDApro LIC, Newstead, Hamilton, New Zealand). The mortality risk from weaning to the start of the second mating period was calculated by dividing the number of deaths by the total number of enrolled animals at weaning. Mortality rate was calculated by dividing the number of deaths over the study period by the total days at risk, and reported as the mortality rate per 100 cow years; this measure was also calculated as the mortality rate per farm. A total of 3,770 animals from 24 farms had data from weaning until the farm planned start of mating when animals were ∼27 mo old. The animal-level mortality incidence risk from weaning (∼13 wk of age) to the start of their second mating (∼27 mo old) was 2.7% (95% confidence interval: 2.2 to 3.3%; 102 deaths/3,770 animals). The median farm-level mortality incidence risk was 3.0%, with a range across farms from 0 to 7.9%. There was a total of 102 deaths over 2,429,362 cow days at risk, with the mean time at risk for the animals of 646 d. The animal-level mortality was 1.53 deaths (95% confidence interval 1.26 to 1.86) per 100 cow years from weaning to second mating start date. The range in farm-level mortality rate was 0 to 4.52 deaths per 100 cow years. The hazard of death did not change throughout the study period. The results from this study are difficult to compare with international studies due to differences in study timing and duration, reporting method (mortality risk vs. mortality rate), and concerns with data validation. However, to the best of our knowledge, the results from this study indicate that postweaning, postnatal mortality under the New Zealand seasonal-calving, pasture-based system is lower than most other reported studies.

Factors affecting piglet mortality during the first 24 h after the onset of parturition in large litters: effects of farrowing housing on behaviour of postpartum sows

The present study aimed to identify the factors that affect immediate (within 24 h after farrowing onset) postnatal piglet mortality in litters with hyperprolific sows, and investigate their associations with behaviour of postpartum sows in two different farrowing housing systems. A total of 30 sows were housed in: (1) CRATE (n=15): the farrowing crate closed (0.80×2.20 m) within a pen (2.50×1.70 m), and (2) OPEN (n=15): the farrowing crate open (0.80×2.20×1.80 m) within a pen (2.50×2.40 m) with a provision of 20 ls of hay in a rack. A total of 518 live born piglets, produced from the 30 sows, were used for data analyses during the first 24 h after the onset of parturition (T24). Behavioural observations of the sows were assessed via video analyses during T24. Total and crushed piglet mortality rates were higher in OPEN compared with CRATE (P<0.01, for both). During T24, the OPEN sows tended to show higher frequency of postural changes (P=0.07) and duration of standing (P=0.10), and showed higher frequencies of bar-biting (P<0.05) and piglet trapping (P<0.01), when compared with the CRATE sows. During T24, the mortality rates caused by crushing were correlated with the piglet trapping event (r=0.93, P<0.0001), postural changes (r=0.37, P<0.01), duration of standing (r=0.32, P<0.01) and frequency of bar-biting behaviour (r=0.51, P<0.01) of the sows (n=30). In conclusion, immediate postnatal piglet mortality, mainly due to crushing, may be associated with potential increases in frequency of postural changes, duration of standing and incidence of piglet trapping in postpartum sows in the open crate system with large litters.