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McDougall H, Hibberd M, Tong A, Neville S, Peterson V, Didier C. Preparation of pyrite concentrate powder from the Thackaringa mine for quantitative phase analysis using X-ray diffraction. J Appl Crystallogr 2022; 55:1572-1582. [PMID: 36570660 PMCID: PMC9721321 DOI: 10.1107/s1600576722009888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 10/10/2022] [Indexed: 12/02/2022] Open
Abstract
The quantitative phase analysis using X-ray diffraction of pyrite ore concentrate samples extracted from the Thackaringa mine is problematic due to poor particle statistics, microabsorption and preferred orientation. The influence of sample preparation on these issues has been evaluated, with ball milling of the powder found most suitable for accurate and precise quantitative phase analysis. The milling duration and other aspects of sample preparation have been explored, resulting in accurate phase reflection intensities when particle sizes are below 5 µm. Quantitative phase analysis on those samples yielded precise phase fractions with standard deviations below 0.3 wt%. Some discrepancy between the elemental composition obtained using X-ray powder diffraction data and that determined using wavelength-dispersive X-ray fluorescence was found, and is thought to arise from unaccounted for crystalline phase substitution and the possible presence of an amorphous phase. This study provides a methodology for the precise and accurate quantitative phase analysis of X-ray powder diffraction data of pyrite ore concentrate from the Thackaringa mine and a discussion of the limitations of the method. The optimization process reveals the importance of confirming reproducibility on new samples, with as much prior knowledge as possible.
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Affiliation(s)
- Hamish McDougall
- School of Chemistry, The University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia,Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Sydney, NSW 2232, Australia
| | - Monica Hibberd
- School of Chemistry, The University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia,Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Sydney, NSW 2232, Australia
| | - Andrew Tong
- Cobalt Blue, 17.03 100 Miller Street, North Sydney, NSW 2060, Australia
| | - Suzanne Neville
- School of Chemistry, The University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia,Correspondence e-mail: , ,
| | - Vanessa Peterson
- Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Sydney, NSW 2232, Australia,Correspondence e-mail: , ,
| | - Christophe Didier
- School of Chemistry, The University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia,Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Sydney, NSW 2232, Australia,Correspondence e-mail: , ,
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Lopresti M, Mangolini B, Milanesio M, Caliandro R, Palin L. Multivariate versus traditional quantitative phase analysis of X-ray powder diffraction and fluorescence data of mixtures showing preferred orientation and microabsorption. J Appl Crystallogr 2022; 55:837-850. [PMID: 35974739 PMCID: PMC9348868 DOI: 10.1107/s1600576722004708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 05/03/2022] [Indexed: 12/03/2022] Open
Abstract
In materials and earth science, but also in chemistry, pharmaceutics and engineering, the quantification of elements and crystal phases in solid samples is often essential for a full characterization of materials. The most frequently used techniques for this purpose are X-ray fluorescence (XRF) for elemental analysis and X-ray powder diffraction (XRPD) for phase analysis. In both methods, relations between signal and quantity do exist but they are expressed in terms of complex equations including many parameters related to both sample and instruments, and the dependence on the active element or phase amounts to be determined is convoluted among those parameters. Often real-life samples hold relations not suitable for a direct quantification and, therefore, estimations based only on the values of the relative intensities are affected by large errors. Preferred orientation (PO) and microabsorption (MA) in XRPD cannot usually be avoided, and traditional corrections in Rietveld refinement, such as the Brindley MA correction, are not able, in general, to restore the correct phase quantification. In this work, a multivariate approach, where principal component analysis is exploited alone or combined with regression methods, is used on XRPD profiles collected on ad hoc designed mixtures to face and overcome the typical problems of traditional approaches. Moreover, the partial or no known crystal structure (PONKCS) method was tested on XRPD data, as an example of a hybrid approach between Rietveld and multivariate approaches, to correct for the MA effect. Particular attention is given to the comparison and selection of both method and pre-process, the two key steps for good performance when applying multivariate methods to obtain reliable quantitative estimations from XRPD data, especially when MA and PO are present. A similar approach was tested on XRF data to deal with matrix effects and compared with the more classical fundamental-parameter approach. Finally, useful indications to overcome the difficulties of the general user in managing the parameters for a successful application of multivariate approaches for XRPD and XRF data analysis are given.
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Affiliation(s)
- Mattia Lopresti
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Beatrice Mangolini
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Marco Milanesio
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Rocco Caliandro
- Institute of Crystallography, CNR, via Amendola 122/o, 70126 Bari, Italy
| | - Luca Palin
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
- Nova Res s.r.l., Via D. Bello 3, 28100 Novara, Italy
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Sherwood AM, Kargbo RB, Kaylo KW, Cozzi NV, Meisenheimer P, Kaduk JA. Psilocybin: crystal structure solutions enable phase analysis of prior art and recently patented examples. Acta Crystallogr C Struct Chem 2022; 78:36-55. [PMID: 34982048 PMCID: PMC8725723 DOI: 10.1107/s2053229621013164] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Accepted: 12/10/2021] [Indexed: 11/28/2022] Open
Abstract
Psilocybin {systematic name: 3-[2-(dimethylamino)ethyl]-1H-indol-4-yl dihydrogen phosphate} is a zwitterionic tryptamine natural product found in numerous species of fungi known for their psychoactive properties. Following its structural elucidation and chemical synthesis in 1959, purified synthetic psilocybin has been evaluated in clinical trials and has shown promise in the treatment of various mental health disorders. In a recent process-scale crystallization investigation, three crystalline forms of psilocybin were repeatedly observed: Hydrate A, Polymorph A, and Polymorph B. The crystal structure for Hydrate A was solved previously by single-crystal X-ray diffraction. This article presents new crystal structure solutions for the two anhydrates, Polymorphs A and B, based on Rietveld refinement using laboratory and synchrotron X-ray diffraction data, and density functional theory (DFT) calculations. Utilizing the three solved structures, an investigation was conducted via Rietveld method (RM) based quantitative phase analysis (QPA) to estimate the contribution of the three different forms in powder X-ray diffraction (PXRD) patterns provided by different sources of bulk psilocybin produced between 1963 and 2021. Over the last 57 years, each of these samples quantitatively reflect one or more of the hydrate and anhydrate polymorphs. In addition to quantitatively evaluating the composition of each sample, this article evaluates correlations between the crystal forms present, corresponding process methods, sample age, and storage conditions. Furthermore, revision is recommended on characterizations in recently granted patents that include descriptions of crystalline psilocybin inappropriately reported as a single-phase `isostructural variant.' Rietveld refinement demonstrated that the claimed material was composed of approximately 81% Polymorph A and 19% Polymorph B, both of which have been identified in historical samples. In this article, we show conclusively that all published data can be explained in terms of three well-defined forms of psilocybin and that no additional forms are needed to explain the diffraction patterns.
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Affiliation(s)
| | | | - Kristi W. Kaylo
- Usona Institute, 2780 Woods Hollow Rd, Madison, WI 53711, USA
| | - Nicholas V. Cozzi
- Neuropharmacology Laboratory, University of Wisconsin, School of Medicine and Public Health, 1300 University Avenue, Madison, WI 53706, USA
- Alexander Shulgin Research Institute, 1483 Shulgin Road, Lafayette, CA 94549, USA
| | | | - James A. Kaduk
- Department of Physics, North Central College, 131 S Loomis Street, Naperville, IL 60540, USA
- Department of Chemistry, Illinois Institute of Technology, 3101 S Dearborn Street, Chicago, IL 60616, USA
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Silvestri A, Ligabue ML, Malavasi G, Lusvardi G. Preparation and Luminescence Properties of Ba₅Si₈O 21 Long Persistent Phosphors Doped with Rare-Earth Elements. Materials (Basel) 2019; 12:E183. [PMID: 30621109 DOI: 10.3390/ma12010183] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 12/28/2018] [Accepted: 12/29/2018] [Indexed: 11/30/2022]
Abstract
The phosphors of formula Ba5Si8O21:Eu2+,Dy3+ were synthesized and studied in order to improve their properties. Their synthesis conditions were evaluated as a function of precursors, crucible composition, flux agents, dopants and temperatures. The samples were characterised by means of a systematic investigation through elemental, kinetic, mineralogical (both qualitative and quantitative), and morphological analysis. This study allows for a careful evaluation of the parameters that influence the formation and properties of Ba5Si8O21:Eu2+,Dy3+ phosphors. As for the synthesis conditions, the use of Na2SiO3, BaCO3 and NH4Cl as precursors was very important to reduce the temperature and time of synthesis. The reducing atmosphere produced with purified coal was cheaper and gave results similar to the more traditional gas mixture (H2/N2). At the end of this study, a phosphor with improved long persistent phosphorescence (LPP) characteristics was obtained with Ba/Si = 0.7, Eu/Si = 2.8 × 10−3 and Dy/Si = 3.6 × 10−3 following a 6 h-synthesis in a quartz crucible.
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Clancy M, Styles MJ, Bettles CJ, Birbilis N, Chen M, Zhang Y, Gu Q, Kimpton JA, Webster NAS. In situ synchrotron X-ray diffraction investigation of the evolution of a PbO₂/PbSO₄ surface layer on a copper electrowinning Pb anode in a novel electrochemical flow cell. Corrigendum. J Synchrotron Radiat 2015; 22:863-864. [PMID: 25931109 DOI: 10.1107/s1600577515007596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Accepted: 04/16/2015] [Indexed: 06/04/2023]
Abstract
Figures 7 and 8 of the article by Clancy et al. [(2015), J. Synchrotron Rad. 22, 366-375] are corrected.
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Affiliation(s)
- Marie Clancy
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Mark J Styles
- CSIRO Manufacturing Flagship, Bayview Avenue, Clayton, VIC 3168, Australia
| | - Colleen J Bettles
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Nick Birbilis
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Miao Chen
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
| | - Yansheng Zhang
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
| | - Qinfen Gu
- Australian Synchrotron, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Justin A Kimpton
- Australian Synchrotron, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Nathan A S Webster
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
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Clancy M, Styles MJ, Bettles CJ, Birbilis N, Chen M, Zhang Y, Gu Q, Kimpton JA, Webster NAS. In situ synchrotron X-ray diffraction investigation of the evolution of a PbO₂/PbSO₄ surface layer on a copper electrowinning Pb anode in a novel electrochemical flow cell. J Synchrotron Radiat 2015; 22:366-375. [PMID: 25723938 DOI: 10.1107/s1600577514027659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Accepted: 12/18/2014] [Indexed: 06/04/2023]
Abstract
This paper describes the quantitative measurement, by in situ synchrotron X-ray diffraction (S-XRD) and subsequent Rietveld-based quantitative phase analysis and thickness calculations, of the evolution of the PbO2 and PbSO4 surface layers formed on a pure lead anode under simulated copper electrowinning conditions in a 1.6 M H2SO4 electrolyte at 318 K. This is the first report of a truly in situ S-XRD study of the surface layer evolution on a Pb substrate under cycles of galvanostatic and power interruption conditions, of key interest to the mining, solvent extraction and lead acid battery communities. The design of a novel reflection geometry electrochemical flow cell is also described. The in situ S-XRD results show that β-PbO2 forms immediately on the anode under galvanostatic conditions, and undergoes continued growth until power interruption where it transforms to PbSO4. The kinetics of the β-PbO2 to PbSO4 conversion decrease as the number of cycles increases, whilst the amount of residual PbO2 increases with the number of cycles due to incomplete conversion to PbSO4. Conversely, complete transformation of PbSO4 to β-PbO2 was observed in each cycle. The results of layer thickness calculations demonstrate a significant volume change upon PbSO4 to β-PbO2 transformation.
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Affiliation(s)
- Marie Clancy
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Mark J Styles
- CSIRO Manufacturing Flagship, Bayview Avenue, Clayton, VIC 3168, Australia
| | - Colleen J Bettles
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Nick Birbilis
- ARC Centre of Excellence for Design in Light Metals, Department of Materials Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Miao Chen
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
| | - Yansheng Zhang
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
| | - Qinfen Gu
- Australian Synchrotron, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Justin A Kimpton
- Australian Synchrotron, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Nathan A S Webster
- CSIRO Mineral Resources Flagship, Private Bag 10, Clayton South, VIC 3169, Australia
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Antonio SG, Paiva-Santos CO, Bezzon VDN. Limits of visual detection for finasteride polymorphs in prepared binary mixtures: analysis by X-ray powder diffraction. J Pharm Sci 2014; 103:3567-3575. [PMID: 25197019 DOI: 10.1002/jps.24148] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 07/23/2014] [Accepted: 08/07/2014] [Indexed: 11/09/2022]
Abstract
Finasteride (FNT) is a drug that inhibits human enzyme type II 5α-reductase that metabolizes testosterone into dihydrotestosterone. There are two enantiotropic polymorphs with known crystal structure: designated as forms I and II. Identification and control of these polymorphic forms in mixtures can be performed using X-ray powder diffraction (XRPD) data and Rietveld method (RM). As experimental conditions may limit the detection of minority phases in mixtures, it is interesting to show what are these limits for some usual and one high-resolution equipment. So, in this work, we discuss the parameters to find the limit of the detection in binary mixtures of forms I and II of FNT according to each experimental condition. The samples analyzed were binary mixtures prepared with anhydrous polymorphs of the drug FNT. These samples were measured in four diffractometers with different experimental condition. These equipments represent the main resolutions generally used for drug analysis by XRPD. For the development of this work, a batch of form I was obtained pure, and another batch with forms I and II was used to obtain pure form II by heat treatment. Depending on the experimental condition, the polymorphs could be detected in a proportion as low as 0.5 wt%. © 2014 Wiley Periodicals, Inc. and the American Pharmacists Association J Pharm Sci 103:3567-3575, 2014.
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Affiliation(s)
- Selma G Antonio
- Departamento de Físico-Química, Instituto de Química, Univ Estadual Paulista - UNESP, Araraquara, SP, CEP: 14800-060, Brazil
| | - Carlos O Paiva-Santos
- Departamento de Físico-Química, Instituto de Química, Univ Estadual Paulista - UNESP, Araraquara, SP, CEP: 14800-060, Brazil
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