Y-chromosome Degeneration due to Speciation and Founder Effect

The Y chromosome in the XY sex-determination system is often shorter than its X counterpart, a condition attributed to degeneration after Y recombination ceases. Contrary to the traditional view of continuous, gradual degeneration, our study reveals stabilization within large mating populations. In these populations, we demonstrate that both mutant and active alleles on the Y chromosome can reach equilibrium through a mutation-selection balance. However, the emergence of a new species, particularly through the founder effect, can disrupt this equilibrium. Specifically, if the male founders of a new species carry only a mutant allele for a particular Y-linked gene, this allele becomes fixed, leading to the loss of the corresponding active gene on the Y chromosome. Our findings suggest that the rate of Y-chromosome degeneration may be linked to the frequency of speciation events associated with single-male founder events.

A stochastic approach for co-evolution process of virus and human immune system

Infectious diseases have long been a shaping force in human history, necessitating a comprehensive understanding of their dynamics. This study introduces a co-evolution model that integrates both epidemiological and evolutionary dynamics. Utilizing a system of differential equations, the model represents the interactions among susceptible, infected, and recovered populations for both ancestral and evolved viral strains. Methodologically rigorous, the model's existence and uniqueness have been verified, and it accommodates both deterministic and stochastic cases. A myriad of graphical techniques have been employed to elucidate the model's dynamics. Beyond its theoretical contributions, this model serves as a critical instrument for public health strategy, particularly predicting future outbreaks in scenarios where viral mutations compromise existing interventions.

Maximum desorption of perfluoroalkyl substances adsorbed on granular activated carbon used in full-scale drinking water treatment plants

Activated carbon adsorption is an effective method for removing perfluoroalkyl substances (PFAS) from water. However, the observation that higher concentrations of PFAS are observed after treatment than before (i.e., desorption) is an important, unsolved issue. In this study, to elucidate PFAS desorption and its relationship with PFAS properties, we conducted solvent extraction and long-term desorption experiments using granular activated carbon (GAC) that had been loaded with PFAS in two actual drinking water treatment plants. The amount of PFAS extracted from GAC depended on the depth in the GAC filter; longer-chain and hydrophobic PFAS were present in relatively higher amounts in the shallow part compared to the deep part of the GAC filter, whereas shorter-chain and hydrophilic PFAS were present in relatively higher amounts in the deep part compared to the shallow part. This pattern was probably due to a chromatographic effect by which hydrophilic PFAS adsorbed once, subsequently desorbed, and migrated from the shallow part of the GAC filter to the deeper part. The desorption potential of PFAS to water (i.e., the maximum amount of PFAS desorbed to water per unit mass of GAC) was estimated by conducting long-term bottle-point desorption tests and analyzing the relationship between the equilibrium water-phase concentration of PFAS in a bottle containing GAC and the amount of PFAS desorbed to water per unit GAC mass. The desorption ratio (ratio of desorption potential to loading) was the highest for PFAS for which the logarithm of the octanol/water distribution coefficient (Log DOW) ranged from -1 to 1. The implication was that most of those PFAS removed by GAC were likely to return to the water as the external water-phase concentrations dropped. The decrease of the desorption ratio to 20 % as Log DOW increased suggested irreversible adsorption due to hydrophobic affinity.

An effective magnetic nanobiocomposite: Preparation, characterization and its application for adsorption removal of P-nitroaniline from aquatic environments

In this investigation, a magnetic nanobiocomposite, denoted as CoFe2O4/Activated Carbon integrated with Chitosan (CoFe2O4/AC@Ch), was synthesized based on a microwave-assisted for the efficacious adsorption of P-nitroaniline (PNA). The physicochemical properties of the said nano biocomposite were thoroughly characterized using a suite of analytical methodologies, namely FESEM/EDS, BET, FTIR, XRD, and VSM. The results confirm the successful synthesis of the nanobiocomposite, with its point of zero charge (pHZPC) determined to be 6.4. Adsorptive performance towards PNA was systematically examined over a spectrum of conditions, encompassing variations in PNA concentration (spanning 10-40 mg/L), adsorbent concentration (10-200 mg/L), contact periods (2.5-22.5 min), and solution pH (3-11). Upon optimization, the conditions converged to an adsorbent concentration of 200 mg/L, pH 5, PNA concentration of 10 mg/L, and a contact duration of 22.5 min, under which an impressive PNA adsorption efficacy of 98.6% was attained. Kinetic and isotherm analyses insinuated the adsorption mechanism to adhere predominantly to the pseudo-second-order kinetic and Langmuir isotherm models. The magnetic nanocomposite was recovered and used in 4 cycles, and the absorption rate reached 86%, which shows the good stability of the magnetic nanocomposite in wastewater treatment. Conclusively, these empirical outcomes underscore the viability of the formulated magnetic nanobiocomposite as a potent, recyclable adsorbent for the proficient extraction of PNA from aqueous matrices.

A label-free high-throughput protein solubility assay and its application to Aβ40

A major hallmark of Alzheimer's disease is the accumulation of aggregated amyloid β peptide (Aβ) in the brain. Here we develop a solubility assay for proteins and measure the solubility of Aβ40. In brief, the method utilizes 96-well filter plates to separate monomeric Aβ from aggregated Aβ, and the small species are quantified with the amine reactive dye o-phthalaldehyde (OPA). This procedure ensures that solubility is measured for unlabeled species, and makes the assay high-throughput and inexpensive. We demonstrate that the filter plates successfully separate fibrils from monomer, with negligible monomer adsorption, and that OPA can quantify Aβ peptides in a concentration range from 40 nM to 20 μM. We also show that adding a methionine residue to the N-terminus of Aβ1-40 decreases the solubility by <3-fold. The method will facilitate further solubility studies, and contribute to the understanding of the thermodynamics of amyloid fibril formation.

Steric and energetic studies on the influence of cellulose on the adsorption effectiveness of Mg trapped hydroxyapatite for enhanced remediation of chlorpyrifos and omethoate pesticides

Magnesium-trapped hydroxyapatite (Mg.HP) was hybridized with cellulose fiber to produce a bio-composite (CLF/HP) with enhanced adsorption affinities for two types of toxic pesticides (chlorpyrifos (CF) and omethoate (OM)). The enhancement influence of the hybridized cellulose on the adsorption performances of Mg.HP was illustrated based on the determined steric and energetic factors. The computed CF and OM adsorption performances of CLF/HP during the saturation phases are 279.8 mg/g and 317.9 mg/g, respectively, which are significantly higher than the determined values using Mg/HP (143.4 mg/g (CF) and 145.3 mg/g (OM)). The steric analysis demonstrates a strong impact of the hybridization process on the reactivity of the surface of the composite. While CLF/HP reflects effective uptake site densities (Nm) of 93.3 mg/g (CF) and 135.3 mg/g (OM), the estimated values for Mg.HP are 51.2 mg/g (CF) and 46.11 mg/g (OM), which explain the reported enhancement in the adsorption performances of the composite. The capacity of each uptake site to be occupied with more than one molecule (n (CF) = 3-3.74 and n (OM) = 2.35-3.54) suggests multimolecular uptake. The energetic factors suggested physical mechanistic processes of spontaneous and exothermic behaviors either during the uptake of CF or OM.

Glioblastoma stem cell metabolism and immunity

Despite enormous efforts being invested in the development of novel therapies for brain malignancies, there remains a dire need for effective treatments, particularly for pediatric glioblastomas. Their poor prognosis has been attributed to the fact that conventional therapies target tumoral cells, but not glioblastoma stem cells (GSCs). GSCs are characterized by self-renewal, tumorigenicity, poor differentiation, and resistance to therapy. These characteristics represent the fundamental tools needed to recapitulate the tumor and result in a relapse. The mechanisms by which GSCs alter metabolic cues and escape elimination by immune cells are discussed in this article, along with potential strategies to harness effector immune cells against GSCs. As cellular immunotherapy is making significant advances in a variety of cancers, leveraging this underexplored reservoir may result in significant improvements in the treatment options for brain malignancies.

Equilibrium, transient dynamics and sustainable reference points under age-specific natural mortality rates and varying levels of population productivity: The case of the Northern cod stock

Scientific advisory bodies provide scientific advice for sustainable fisheries management based on the precautionary approach and maximum sustainable yield (MSY) reference points, such as spawning stock biomass (SSB) value Blim, and fishing mortality giving MSY, FMSY. The lack of a stock-recruitment function (SRF) to identify a clear breakpoint Blim has recently emerged in important stock collapses. It also precludes the use of equilibrium-based methods to analyze the sustainability of FMSY. Considering a hockey stick (HS) SRF, we propose here an equilibrium-based method that characterizes the equilibriums, their stability properties, transient dynamics, and changes in productivity (including age-specific natural mortality rates). We show that these relevant factors, not taken into account in standard methods, should play a central role in fisheries management and conservation. Considering the Northern cod stock (NCS) (Gadus morhua) by way of illustration, we properly estimate the HS and its associated Blim. We find that the HS fitted by the Fisheries Library in R underestimates Blim. Additionally, we determine the levels of productivity (medium-low or medium-high), and their corresponding growth rates of the SSB, which are consistent with the observed population dynamics. We find that the NCS was managed during the 1980s under myopic (unsustainable) harvest control rules, neglecting high age-specific natural mortality rates. We also find that recovery of the NCS remains a distant prospect, despite the current stable, positive equilibrium (sustainable FMSY).

Deep insights into kinetics, optimization and thermodynamic estimates of methylene blue adsorption from aqueous solution onto coffee husk (Coffee arabica) activated carbon

In the current study, an attempt was made to synthesize coffee husk (CH) activated carbon by chemical modification approach (sulphuric acid-activated CH (SACH) activated carbon) and was used as a valuable and economical sorbent for plausible remediation of Methylene blue (MB) dye. Batch mode trials were carried out by carefully varying the batch experimental variables: SACH activated carbon (SACH AC) dosage, pH, initial dye concentration, temperature, and contact time. The optimum equilibrium time for adsorption by SACH activated carbon was obtained as 60 min, and the maximum adsorption took place at 30 °C. Morphological and elemental composition, crystallinity behaviour, functional groups, and thermal stability were examined using SEM with EDX, XRD, FTIR, BET, TGA, and DTA and these tests showed successful production of activated carbon. The outcomes showed that chemical activation enhanced the number of pores and roughness which possibly maximized the adsorptive potential of coffee husk. The Box-Benken design (BBD) was used to optimize the MB dye adsorption studies and 99.48% MB dye removed at SACH AC dosage of 4.83 g/L at 30 °C for 60 min and pH 8.12, and the maximum adsorption was yielded for sulphuric acid-activated coffee husk carbon carbon with 88.1 mg/g maximum MB adsorption capacity. Langmuir- Freundlich model deliberately provided a better fit to the equilibrium data. The SACH AC-MB dye system kinetics showed a high goodness-of-fit with pseudo second order model, compared to other studied models. Change in Gibbs's free energy (ΔGo) of the system indicated spontaneity whereas low entropy value (ΔSo) suggested that the removal of MB dye on the SACH activated carbon was an enthalpy-driven process. The exothermic nature of the sorption cycle was affirmed by the negative enthalpy value (ΔHo). The adsorptive-desorptive studies reveal that SACH AC could be restored with the maximum adsorption efficiency being conserved after the fifth cycles. Overall, the outcomes revealed that sulphuric acid-activated coffee husk activated carbon (SACH AC) can be used as prompt alternative for low-cost sorbent for treating dye-laden synthetic wastewaters.

Equilibrium in the governance of cross-sectoral policies: how does it translate into practice?

BACKGROUND

There is growing interest from health researchers in the governance of Health in All Policies (HiAP). Furthermore, the COVID-19 pandemic has re-ignited managers' interest in HiAP governance and in health prevention activities that involve actors from outside health ministries. Since the dynamics of these multi-actor, multi-sectoral policies are complex, the use of systems theory is a promising avenue toward understanding and improving HiAP governance. We focus on the concept of equilibrium within systems theory, especially as it points to the need to strike a balance between actors that goes beyond synergies or mimicry-a balance that is essential to HiAP governance.

METHOD

We mobilized two sources of data to understand how the concept of equilibrium applies to HiAP governance. First, we reviewed the literature on existing frameworks for collaborative governance, both in general and for HiAP specifically, in order to extract equilibrium-related elements. Second, we conducted an in-depth case study over three years of an HiAP implemented in Quebec, Canada.

RESULTS

In total, we identified 12 equilibrium-related elements relevant to HiAP governance and related to knowledge, actors, learning, mindsets, sustainability, principles, coordination, funding and roles. The equilibria were both operational and conceptual in nature.

CONCLUSIONS

We conclude that policy makers and policy implementers could benefit from mobilizing these 12 equilibrium-related elements to enhance HiAP governance. Evaluators of HiAP may also want to consider and integrate them into their governance assessments.

Global asymptotic stability in a pseudorabies virus model with age structure

Pseudorabies is a highly contagious disease caused by pseudorabies virus (PRV) or suid herpesvirus 1 (SuHV1), causing significant economic losses to the swine industry in countries where the disease exists. In this paper, we formulate an age structure model of pseudorabies virus that takes into account disease-related mortality and vertical transmission. We find a threshold to determine the stability and existence of the disease. We show that there is always a globally asymptotically stable boundary equilibrium if and only if R 02 < 1 + θ , which means that the disease always exists in piglets and will die out in adult pigs. When R 02 > 1 + θ , the boundary equilibrium is unstable and there exists a unique disease-endemic equilibrium, which is globally asymptotically stable. We give detailed proofs of our theoretical results and numerical examples. Brief concluding remarks are also provided.

Non-equilibrium modalities of inhibition: Characterizing irreversible inhibition for the ErbB receptor family members

Most drug target interactions for clinically approved small-molecules are non-equilibrium slow-onset, tight-binding or irreversible in nature, with pronounced element of time-dependence of inhibition. Analysis of such modality of inhibition requires a continuous enzyme kinetic measurement that can yield complete progress curves and an automated high-throughput analysis pipeline. Given the increasing emphasis on designing non-equilibrium modes of inhibiting an enzyme target (especially irreversible), the above specified pipeline for data generation and analysis is essential for extracting parameters to guide decisions in early drug discovery. In this manuscript, the methodology and data analysis protocol from our irreversible inhibitor characterization campaigns for the ErbB receptor family members is presented. Guidance is provided on the appropriate design of assay to generate quality data, setting up the analysis and estimation of inactivation rate (kinact) and the pseudo-equilibrium binding affinity (KI) constant (or their ratio kinact/KI) in a high-throughput manner for the inhibitor interacting with the protein target of interest.

Fostering a Coordinated Teaching of the Experimental Sciences: Introduce Entropy and Chemical Potential from the Beginning!

Using a conceptual framework based a) on a model where energy is the regulating agent and b) on the introduction of conjugated intensive and extensive quantities, together with the introduction from the beginning of the concepts of entropy and chemical potential allows to coherently model a variety of situations relating to didactically interesting examples referring to different disciplines.

Research and orthodontics: About scientific progress in biomechanics

This article describes the importance of biomechanics in orthodontics through the development of the segmented arch technique and the research performed in this field. Clinicians are encouraged to develop specific goals of treatment based on a precise diagnosis and to design appliances that will deliver the desired force system. In this article we emphasize the importance of a thorough analysis of the force system needed to achieve the desired orthodontic tooth movement and avoid any of the undesired side effects of treatment mechanics. We show that a well-thought out and planned treatment will lead to better clinical outcomes that will benefit our patients.

Use of Chrysosporium/carbon nanotubes for preconcentration of ultra-trace cadmium levels from various samples after extensive studies on its adsorption properties

Carbon nanotubes were used to immobilize Chrysosporium fungus for building an adequate adsorbent to be used as an desirable sorbent for preconcentration and measurement of cadmium ultra-trace levels in various samples. After characterization, the potential of Chrysosporium/carbon nanotubes for the sorption of Cd(II) ions was scrutinized by the aid of central composite design, and comprehensive studies of sorption equilibrium, kinetics and thermodynamic aspects were accomplished. Then, the composite was utilized for preconcentration of ultra-trace cadmium levels, by a mini-column packed with Chrysosporium/carbon nanotubes, before its determination with ICP-OES. The outcomes vouchsafed that (i) Chrysosporium/carbon nanotube has a high tendency for selective and rapid sorption of cadmium ion, at pH 6.1, and (ii) kinetic, equilibrium, and thermodynamic studies showed a high affinity of the Chrysosporium/carbon nanotubes for cadmium ion. Also, the outcomes displayed that cadmium can quantitatively be sorbed at a flow speed lesser than 7.0 mL/min and a 1.0 M HCl solution (3.0 mL) was sufficient to desorbe the analyte. Eventually, preconcentration and measurement of Cd(II) in different foods and waters were successfully accomplished with good accuracy, high precision (RSDs ≤5.65%), and low limit of detection (0.015 μg/L).

Crosslinked modified chitosan biopolymer for enhanced removal of toxic Cr(VI) from aqueous solution

Two new crosslinked modified chitosan biopolymers, namely (CTS-VAN) and (Fe₃O₄@CTS-VAN) bioadsorbents were prepared starting from chitosan and 4-hydroxy-3-methoxybenzaldehyde (VAN) in presence of epichlorohydrin. The analytical techniques FT-IR, EDS, XRD, SEM and XPS besides BET surface analysis were utilized for full characterization of the bioadsorbents. Batch experiments were conducted to study the effect of various influencing parameters in Cr (VI) removal such as initial pH, contact time, adsorbent amount and initial Cr (VI) concentration. The adsorption of Cr (VI) was found out to be maximum at pH = 3 for both bioadsorbents. Langmuir isotherm fit well the adsorption process with a maximum adsorption capacity of 188.68 and 98.04 mg/g for CTS-VAN and Fe₃O₄@CTS-VAN, respectively. The adsorption process followed pseudo second-order kinetics with R² values of 1 and 0.9938 for CTS-VAN and Fe₃O₄@CTS-VAN, respectively. X-ray photoelectron spectroscopy (XPS) analysis showed that Cr(III) accounted for 83 % of the total Cr bound to bioadsorbents surface, which indicated reductive adsorption was responsible for Cr(VI) removal by the bioadsorbents. Cr(VI) was initially adsorbed on the positively charged surface of the bioadsorbents and reduced to Cr(III) by electrons provided by oxygen-comprising functional groups (e.g., CO), and consequently part of the converted Cr(III) stayed on the surface and the rest released into solution.

[Muscle activation times facing to a perturbation in patients with early-stage Parkinson's disease]

OBJECTIVES

Parkinson's disease (PD) generates a high incidence of falls, however, there is little evidence of instabilities in the initial stages. This investigation sought to compare the muscle activation times in patients with initial PD against a postural disturbance vs. a control group.

MATERIALS AND METHODS

The electromyographic activity (EMG) of 10 patients with PD in early stages (61.3 ±3.8 years) and a control group of 10 adults (62.2 ±3.0 year) was evaluated. The participants were subjected to a surface disturbance, which generated a stabilization response. The test was performed under 2conditions: eyes open (OA) v/s eyes closed (OC). Trunk (spinal erector) and lower extremity (soleus, tibialis anterior, femoral biceps, femoral rectus, adductor magnus, gluteus medius) muscle activation time was analyzed using surface EMG.

RESULTS

The PD group showed faster response times compared to the control group in the soleus muscle in OC (P=.04). This same muscle showed differences when comparing OA vs. OC only in the PD group (P=.04), showing a shorter response time in the OC condition. When comparing the spinal erector muscle, the PD group showed slower response times in the OA (P=.02) and OC (P=.04) conditions compared to the control group.

CONCLUSIONS

Muscle activation times show that people with PD respond slower in the trunk muscles, while activation times decrease at the distal level. In the early stages, the slower responses at the trunk level could explain the onset of instability postural in these patients.

Dynamic analysis of rumor propagation model with media report and time delay on social networks

When a rumor appears on social networks, the media of relevant departments need reaction time to make an authoritative announcement. Considering the effects of the media report and time delay on a rumor spreading, and the different attitudes of individuals towards media reports. We proposed a susceptible-expose-infective-media-remover (SEIMR) rumor propagation model with media reports and time delay. Firstly, the basic reproduction number of the model is obtained. Secondly, the positivity, boundedness and existence of the solutions of the model are analyzed. Then, the local asymptotic stability of the rumor free equilibrium and the boundary equilibriums is proved, and the global asymptotic stability of the equilibriums is proved by constructing Lyapunov function when the time delay is zero. Besides, the prevention and control effects of the media report on rumor spreading and the effect of time delay are analyzed. The shorter time delay in media report and the greater the impact of the media report, the more effective the suppression of rumors will be. Finally, the accuracy of the theoretical results as well as the effects of different parameters of the model have been verified through numerical simulations, and the effectiveness of the SEIMR model has been verified via comparative experiments.

London Dispersion Effects in a Distannene/Tristannane Equilibrium: Energies of their Interconversion and the Suppression of the Monomeric Stannylene Intermediate

Reaction of {LiC6H2-2,4,6-Cyp3·Et2O}2 (Cyp = cyclopentyl) (1) of the new dispersion energy donor (DED) ligand, 2,4,6-triscyclopentylphenyl with SnCl2 afforded a mixture of the distannene {Sn(C6H2-2,4,6-Cyp3)2}2 (2), and the cyclotristannane {Sn(C6H2-2,4,6-Cyp3)2}3 (3). 2 is favored in solution at higher temperature (345 K or above) whereas 3 is preferred near 298 K. Van't Hoff analysis revealed the 3 to 2 conversion has a ΔH = 33.36 kcal mol-1 and ΔS = 0.102 kcal mol-1 K-1, which gives a ΔG300 K = +2.86 kcal mol-1, showing that the conversion of 3 to 2 is an endergonic process. Computational studies show that DED stabilization in 3 is -28.5 kcal mol-1 per {Sn(C6H2-2,4,6-Cyp3)2 unit, which exceeds the DED energy in 2 of -16.3 kcal mol-1 per unit. The data clearly show that dispersion interactions are the main arbiter of the 3 to 2 equilibrium. Both 2 and 3 possess large dispersion stabilization energies which suppress monomer dissociation (supported by EDA results).

Global dynamics of two-strain epidemic model with single-strain vaccination in complex networks

Contagious pathogens, such as influenza and COVID-19, are known to be represented by multiple genetic strains. Different genetic strains may have different characteristics, such as spreading more easily, causing more severe diseases, or even evading the immune response of the host. These facts complicate our ability to combat these diseases. There are many ways to prevent the spread of infectious diseases, and vaccination is the most effective. Thus, studying the impact of vaccines on the dynamics of a multi-strain model is crucial. Moreover, the notion of complex networks is commonly used to describe the social contacts that should be of particular concern in epidemic dynamics. In this paper, we investigate a two-strain epidemic model using a single-strain vaccine in complex networks. We first derive two threshold quantities, R 1 and R 2 , for each strain. Then, by using the basic tools for stability analysis in dynamical systems (i.e., Lyapunov function method and LaSalle's invariance principle), we prove that if R 1 < 1 and R 2 < 1 , then the disease-free equilibrium is globally asymptotically stable in the two-strain model. This means that the disease will die out. Furthermore, the global stability of each strain dominance equilibrium is established by introducing further critical values. Under these stability conditions, we can determine which strain will survive. Particularly, we find that the two strains can coexist under certain condition; thus, a coexistence equilibrium exists. Moreover, as long as the equilibrium exists, it is globally stable. Numerical simulations are conducted to validate the theoretical results.

Perspective of reactive separation of levulinic acid in conceptual mixer settler reactor

Levulinic acid is a carboxylic acid present in industrial downstream. It is an important chemical and can be transformed into various important chemicals such as 1,4-pentanediol, aminolevulinic acid, succinic acid, gamma valarolactone, hydoxyvaleric acid, and diphenolic acid. It is considered one of the top ten most important building block chemicals and bio-derived acids. Levulinic acid can be directly produced using biomass, chemical synthesis, and fermentation processes at industrial and laboratory scales. The biomass process produces the char, whereas the fermentation process generates waste during the production of levulinic acid, leading to an increase in the production cost and waste streams. The separation of levulinic acid from the waste is expensive and challenging. In the present study, reactive extraction was employed using trioctylamine in i-octanol for the separation of levulinic acid. The experimental results were expressed in terms of performance parameters like distribution coefficient (0.099-6.14), extraction efficiency (9-86%), loading ratio (0.09-0.7), and equilibrium complexation constant (11.34-1.05). The mass action law model was also applied and found the predicted values were in close agreement with the experimental results. The mixer settler extraction in series was used to achieve more than 98% separations of acid. Furthermore, the conceptual approach for separation of levulinic acid using a mixer settler reactor scheme was discussed and presented various design parameters including extraction efficiency, diffusion coefficient, equilibrium complexation constant, and loading ratio. The study is helpful in recovering the valuable chemicals present in industrial downstream and reducing their environmental impacts if any.

Biased Borate Esterification during Nucleoside Phosphorylase-Catalyzed Reactions: Apparent Equilibrium Shifts and Kinetic Implications

Biocatalytic nucleoside (trans-)glycosylations catalyzed by nucleoside phosphorylases have evolved into a practical and convenient approach to the preparation of modified nucleosides, which are important pharmaceuticals for the treatment of various cancers and viral infections. However, the obtained yields in these reactions are generally determined exclusively by the innate thermodynamic properties of the nucleosides involved, hampering the biocatalytic access to many sought-after target nucleosides. We herein report an additional means for reaction engineering of these systems. We show how apparent equilibrium shifts in phosphorolysis and glycosylation reactions can be effected through entropically driven, biased esterification of nucleosides and ribosyl phosphates with inorganic borate. Our multifaceted analysis further describes the kinetic implications of this in situ reactant esterification for a model phosphorylase.

Adsorption of Cd2+ onto apatite surface: Equilibrium, kinetics and thermodynamic studies

This study examined the application of chemically synthesized apatite (CHAp) powder as a potential adsorbent for the elimination of Cd²⁺ in aqueous medium. The synthesized hydroxyapatite (HAp) powder before and after adsorption was elucidated by XRD, EDX, FT-IR, SEM, and TEM analytical techniques. The role of time, initial Cd²⁺ concentration, amount of CHAp used, temperature and solution pH on the adsorption process were investigated. Data from the adsorption process were subjected to Dubinin-Radushkevich, Langmuir, Freundlich, and Tempkin adsorption isotherms, while pseudo-first-order, pseudo-second-order, Elovich and intraparticle diffusion kinetic models were used for the kinetics investigation. Results from XRD confirmed that chief characteristic peaks of HAp powder were detected, while functional groups such as PO₄ ^3-, CO₃ ^2- and OH^- matching pure HAp were displayed in the FT-IR spectra. Round shape morphology of the CHAp was confirmed by SEM and TEM analyses. Langmuir isotherm best described the adsorption process with ceiling adsorption capacity of 195.711 mg/g, whereas, the adsorption mechanism obeys the pseudo-first-order model which suggests a physical adsorption process. The value of entropy change (ΔS) of the adsorption of Cd²⁺ onto CHAp surface was obtained to be 0.610 kJ/mol, while the value of enthalpy change obtained was 175.591 kJ/mol. Results from free energy change obtained adjudged the adsorption process to be spontaneous and endothermic in character. Thus, the chemically synthesized HAp could be an excellent adsorbent for the elimination of Cd²⁺ in bioremediation applications.

Determination of equilibria constants of arginine:glycine amidinotransferase (AGAT)-catalyzed reactions using concentrations of circulating amino acids

Arginine:glycine amidinotransferase (AGAT) catalyzes mainly two reactions that generate 1) L-homoarginine (hArg) from L-arginine and L-lysine (K_harg) and 2) guanidinoacetate (GAA) and L-ornithine from L-arginine and glycine (K_gaa). Previously, we found that pharmacological treatment of Becker muscular dystrophy (BMD) patients with metformin or L-citrulline resulted in antidromic effects on serum hArg and GAA concentrations, seemingly acting as an inhibitor and effector of AGAT activity, respectively. Here, we used data of this study as a model to determine K_harg and K_gaa values by using the concentrations of the participating amino acids measured in serum samples of the BMD patients. The study aimed to prove the general utility of this approach to investigate effects of amino acids and drugs on AGAT-catalyzed reactions in vivo in humans.

Wave speed and critical patch size for integro-difference equations with a strong Allee effect

Simplified conditions are given for the existence and positivity of wave speed for an integro-difference equation with a strong Allee effect and an unbounded habitat. The results are used to obtain the existence of a critical patch size for an equation with a bounded habitat. It is shown that if the wave speed is positive there exists a critical patch size such that for a habitat size above the critical patch size solutions can persist in space, and if the wave speed is negative solutions always approach zero. An analytical integral formula is developed to determine the critical patch size when the Laplace dispersal kernel is used, and this formula shows existence of multiple equilibrium solutions. Numerical simulations are provided to demonstrate connections among the wave speed, critical patch size, and Allee threshold.