Microbial community roles and chemical mechanisms in the parasitic development of Orobanche cumana

Orobanche cumana Wallr. is a holoparasite weed that extracts water and nutrients from its host the sunflower, thereby causing yield reductions and quality losses. However, the number of O. cumana parasites in the same farmland is distinctly different. The roots of some hosts have been heavily parasitized, while others have not been parasitized. What are the factors contributing to this phenomenon? Is it possible that sunflower interroot microorganisms are playing a regulatory role in this phenomenon? The role of the microbial community in this remains unclear. In this study, we investigated the rhizosphere soil microbiome for sunflowers with different degrees of O. cumana parasitism, that is, healthy, light infection, moderate infection, and severe infection on the sunflower roots. The microbial structures differed significantly according to the degree of parasitism, where Xanthomonadaceae was enriched in severe infections. Metagenomic analyses revealed that amino acid, carbohydrate, energy, and lipid metabolism were increased in the rhizosphere soils of severely infected sunflowers, which were attributed to the proliferation of Lysobacter. Lysobacter antibioticus (HX79) was isolated and its capacity to promote O. cumana seed germination and increase the germ tube length was confirmed by germination and pot experiments. Cyclo(Pro-Val), an active metabolite of strain HX79, was identified and metabolomic and molecular docking approaches confirmed it was responsible for promoting O. cumana seed germination and growth. And we found that Pseudomonas mandelii HX1 inhibited the growth of O. cumana in the host rhizosphere soil. Our findings clarify the role of rhizosphere microbiota in regulating the parasite O. cumana to possibly facilitate the development of a new weed suppression strategy.

Chinese guideline on the application of anti-seizure medications in the perioperative period of supratentorial craniocerebral surgery

Seizures are a common symptom of craniocerebral diseases, and epilepsy is one of the comorbidities of craniocerebral diseases. However, how to rationally use anti-seizure medications (ASMs) in the perioperative period of craniocerebral surgery to control or avoid seizures and reduce their associated harm is a problem. The China Association Against Epilepsy (CAAE) united with the Trauma Group of the Chinese Neurosurgery Society, Glioma Professional Committee of the Chinese Anti-Cancer Association, Neuro-Oncology Branch of the Chinese Neuroscience Society, and Neurotraumatic Group of Chinese Trauma Society, and selected experts for consultancy regarding outcomes from evidence-based medicine in domestic and foreign literature. These experts referred to the existing research evidence, drug characteristics, Chinese FDA-approved indications, and expert experience, and finished the current guideline on the application of ASMs during the perioperative period of craniocerebral surgery, aiming to guide relevant clinical practice. This guideline consists of six sections: application scope of guideline, concepts of craniocerebral surgery-related seizures and epilepsy, postoperative application of ASMs in patients without seizures before surgery, application of ASMs in patients with seizures associated with lesions before surgery, emergency treatment of postoperative seizures, and 16 recommendations.

Microplastics alter nitrous oxide production and pathways through affecting microbiome in estuarine sediments

Increasing microplastics (MPs) pollution in estuaries profoundly impacts microbial ecosystems and biogeochemical processes. Nitrous oxide (N₂O), a powerful greenhouse gas, is an important intermediate product of microbial nitrogen cycling. However, how MPs regulate N₂O production and its pathways remain poorly understood. Here, impacts of traditional petroleum-based and emerging biodegradable MPs on microbial N₂O production and its pathways were studied through dual-isotope (¹⁵N-¹⁸O) labeling technique and molecular methods. Results indicated that both traditional petroleum-based and emerging biodegradable MPs promoted sedimentary N₂O production, whereas pathways varied. Biodegradable polylactic acid (PLA) MPs displayed greater promotion of N₂O production than petroleum-based MPs, polyvinyl chloride (PVC) and polyethylene (PE), of which PLA promoted through nitrifier nitrification (NN) and heterotrophic denitrification (HD), PE through nitrifier denitrification and HD, and PVC through NN. By combining the analysis of N₂O production rates with sediment chemical and microbiological properties, we demonstrated that the enrichment of nitrifying and denitrifying bacteria, as well as related functional genes directly and/or indirectly increased N₂O production primarily by interacting with carbon and nitrogen substrates. Different response of nitrogen cycling microbes to MPs led to the difference in N₂O increase pathways, of which nitrifying bacteria significantly enriched in all MPs treatments due to the niches provided by MPs. However, part of denitrifying bacteria significantly enriched in treatments containing PLA and PE MPs, which may serve as organic carbon substrates. This work highlights that the presence of MPs can promote sedimentary N₂O production, and the emerging biodegradable MPs represented by PLA may have a greater potential to enhance estuarine N₂O emissions and accelerate global climate change.

Climate warming, but not Spartina alterniflora invasion, enhances wetland soil HONO and NOx emissions

Climate warming and invasive plant growth (plant invasion) may aggravate air pollution by affecting soil nitrogen (N) cycling and the emissions of reactive N gases, such as nitrous acid (HONO) and nitrogen oxides (NO_x). However, little is known about the response of soil NO_y (HONO + NO_x) emissions and microbial functional genes to the interaction of climate warming and plant invasion. Here, we found that experimental warming (approximately 1.5 °C), but not Spartina alterniflora invasion, increased NO_y emissions (0-140 ng N m^-2 s^-1) of treated wetland soils by 4-10 fold. Warming also decreased soil archaeal and fungal richness and diversity, shifted their community structure (e.g., decreased the archaeal classes Thermoplasmata and Iainarchaeia, and increased the archaeal genus Candidatus Nitrosoarchaeum, and the fungal classes Saccharomycetes and Tritirachiomycetes), and decreased the overall abundance of soil N cycling genes. Structural equation modeling revealed that warming-associated changes in edaphic factors and the microbial N cycling potential are responsible for the observed increase in soil NO_y emissions. Collectively, the results showed that climate warming accelerates soil N cycling by stimulating large soil HONO and NO_x emissions, and influences air quality by contributing to atmospheric reactive N and ozone cycling.

Dark carbon fixation in intertidal sediments: Controlling factors and driving microorganisms

Dark carbon fixation (DCF) contributes approximately 0.77 Pg C y^-1 to oceanic primary production and the global carbon budget. It is estimated that nearly half of the DCF in marine sediments occurs in estuarine and coastal regions, but the environmental factors controlling DCF and the microorganisms responsible for its production remain under exploration. In this study, we investigated DCF rates and the active chemoautotrophic microorganisms in intertidal sediments of the Yangtze Estuary, using ¹⁴C-labeling and DNA-stable isotope probing (DNA-SIP) techniques. The measured DCF rates ranged from 0.27 to 3.37 mmol C m^-2 day^-1 in intertidal surface sediments. The rates of DCF were closely related to sediment sulfide content, demonstrating that the availability of reductive substrates may be the dominant factor controlling DCF in the intertidal sediments. A significant positive correlation was also observed between the DCF rates and abundance of the cbbM gene. DNA-stable isotope probing (DNA-SIP) results further confirmed that cbbM-harboring bacteria, rather than cbbL-harboring bacteria, played a dominant role in DCF in intertidal sediments. Phylogenetic analysis showed that the predominant cbbM-harboring bacteria were affiliated with Burkholderia, including Sulfuricella denitrificans, Sulfuriferula, Acidihalobacter, Thiobacillus, and Sulfurivermis fontis. Moreover, metagenome analyses indicated that most of the potential dark-carbon-fixing bacteria detected in intertidal sediments also harbor genes for sulfur oxidation, denitrification, or dissimilatory nitrate reduction to ammonium (DNRA), indicating that these chemoautotrophic microorganisms may play important roles in coupled carbon, nitrogen, and sulfur cycles. These results shed light on the ecological importance and the underlying mechanisms of the DCF process driven by chemoautotrophic microorganisms in intertidal wetlands.

Liraglutide alleviates vascular injury in diabetic rabbits with lower limb vascular stenosis through regulation of RCAN1

OBJECTIVE

The aim of the present study is to explore the possible mechanism that may have ameliorative effect of liraglutide (Lira) on diabetic lower extremity vascular stenosis.

MATERIALS AND METHODS

A diabetic rabbit model of lower extremity stenosis was established and treated with Lira. The intimal hyperplasia of the lower extremity and the oxidative stress level of vascular tissue were observed and examined. Vascular smooth muscle cells (VSMCs) induced by high glucose (HG) were treated with Lira, and RCAN1 overexpressing plasmid was constructed to transfect VCMCs.

RESULTS

Lira treatment showed its association in significantly improving the hyperplasia of the intima, the level of oxidative stress, and the level of homeostasis model assessment of insulin resistance (HOMA-IR) in rabbits induced by diabetes and lower limb stenosis. In addition, Lira treatment reduced the elevated expression of RCAN1 in vascular tissues induced by diabetes. Not only could Lira treatment inhibit the increase of ROS level, proliferation and migration of VSMCs induced by HG, but reduce the expression of PCNA, MMP-9 and collagen I induced by HG. Overexpression of RCAN1 in VSMCs counteracted the effect of Lira, suggesting that Lira affected the proliferation and migration of VSMCs by regulating RCAN1.

CONCLUSIONS

Our findings have important implications for Lira to exert beneficial outcomes in reducing excessive neointimal formation after lower extremity vascular injury in diabetic rabbits via the regulation of RCAN1.

Metagenomics highlights the impact of climate and human activities on antibiotic resistance genes in China's estuaries

Estuarine environments faced with contaminations from coastal zones and the inland are vital sinks of antibiotic resistance genes (ARGs). However, little is known about the temporal-spatial pattern of ARGs and its predominant constraints in estuarine environments. Here, we leveraged metagenomics to investigate ARG profiles from 16 China's estuaries across 6 climate zones in dry and wet seasons, and disentangled their relationships with environmental constraints. Our results revealed that ARG abundance, richness, and diversity in dry season were higher than those in wet season, and ARG abundance exhibited an increasing trend with latitude. The prevalence of ARGs was significantly driven by human activities, mobile gene elements, microbial communities, antibiotic residuals, physicochemical properties, and climatic variables. Among which, climatic variables and human activities ranked the most important factors, contributing 44% and 36% of the total variance of observed ARGs, respectively. The most important climatic variable shaping ARGs is temperature, where increasing temperature is associated with decreased ARGs. Our results highlight that the prevalence of ARGs in estuarine environments would be co-driven by anthropogenic activities and climate, and suggest the dynamics of ARGs under future changing climate and socioeconomic development.

Effects of Aquatic Acidification on Microbially Mediated Nitrogen Removal in Estuarine and Coastal Environments

Acidification of estuarine and coastal waters is anticipated to influence nitrogen (N) removal processes, which are critical pathways for eliminating excess N from these ecosystems. We found that denitrification rates decreased significantly under acidified conditions (P < 0.05), which reduced by 41-53% in estuarine and coastal sediments under an approximately 0.3 pH reduction of the overlying water. However, the N removal rates through the anaerobic ammonium oxidation (anammox) process were concomitantly promoted under the same acidification conditions (increased by 47-109%, P < 0.05), whereas the total rates of N loss were significantly inhibited by aquatic acidification (P < 0.05), as denitrification remained the dominant N removal pathway. More importantly, the emission of nitrous oxide (N₂O) from estuarine and coastal sediments was greatly stimulated by aquatic acidification (P < 0.05). Molecular analyses further demonstrated that aquatic acidification also altered the functional microbial communities in estuarine and coastal sediments; and the abundance of denitrifiers was significantly reduced (P < 0.05), while the abundance of anammox bacteria remained relatively stable. Collectively, this study reveals the effects of acidification on N removal processes and the underlying mechanisms and suggests that the intensifying acidification in estuarine and coastal waters might reduce the N removal function of these ecosystems, exacerbate eutrophication, and accelerate global climate change.

[Practice and understanding of coronavirus disease 2019 epidemiological survey]

Epidemiological survey is a primary measure, following an epidemic detection and report, implemented by agencies for disease control and prevention according to law. It is the key to disposing coronavirus disease 2019 (COVID-19) epidemic and the premise of rapidly controlling this epidemic. In this paper, the essence and fundamental purpose of epidemiological survey in epidemic response was respectively attributed to emergency disposal and epidemic control. Fresh COVID-19 cases experienced by the author were used to introduce "limiting an epidemic to the minimum scale", on-site rapid disposal, developing and verifying a hypothesis, and report writing and suggest some challenges in the survey. This paper highlighted the role of on-site survey that should be not only investigating, but also hypothesizing and, in particular, rapidly disposing. The on-site experience and problems should be particularly transformed into strategies and measures for epidemic prevention and control in time. This paper also emphasized thinking of forming and perfecting the "evidence chain" by systematically checking and laying out the evidence, so as to serve verification of hypotheses. In the face of a once-in-a-century epidemic, extracting the valuable frontline experience of epidemiological survey would be helpful to accurately handle the epidemic situation, maintain the dynamic COVID-zero status, and respond to other major public health events in the future.

N2O emission dynamics along an intertidal elevation gradient in a subtropical estuary: Importance of N2O consumption

Studying nitrous oxide (N₂O) production and consumption processes along an intertidal elevation gradient can improve the understanding of N₂O dynamics among coastal wetlands. A natural-abundance isotope technique was applied to characterize the processes responsible for N₂O emission in high, middle and low intertidal zones in the Yangtze Estuary. The results showed that N₂O emission rates in high tidal zones (0.84 ± 0.35 nmol g^-1 h^-1) were significantly higher than those in middle (0.21 ± 0.04 nmol g^-1 h^-1) and low tidal zones (0.26 ± 0.05 nmol g^-1 h^-1). Gross N₂O production and consumption rates were greater in high and low tidal zones than in middle tidal zones, whereas N₂O consumption proportions generally increased from high to low tidal zones. N₂O consumption was quite pronounced, implying that N₂O emission in estuarine wetlands accounts for only a small fraction of the total production. Higher degrees of N₂O consumption were the pivotal driver of less N₂O emission in low tidal zones. Bacterial denitrification (>84%) was the dominant pathway, although hydroxylamine (NH₂OH) oxidation/fungal denitrification contributed substantially to N₂O production in high tidal flats. The contribution to N₂O production exhibited a decrease in NH₂OH oxidation/fungal denitrification and an increase in bacterial denitrification with decreasing elevation. Changes in N₂O dynamics along the elevation gradient were affected by carbon and nitrogen substrate availabilities as well as the redox environments. Overall, our findings highlight the importance of N₂O consumption in controlling N₂O emission in intertidal wetlands, especially with higher inundation frequencies and durations.

Nitrous oxide emissions from subtropical estuaries: Insights for environmental controls and implications

Estuaries are expected to contribute large nitrous oxide (N₂O) emissions, however the environmental controls and implications of N₂O emissions have not been well understood. Here we investigated water N₂O concentrations, fluxes and sources in wet and dry seasons for 2019-2020 in five subtropical estuaries spanning hydrologic characteristics and nitrogen concentrations gradient. Water dissolved N₂O concentrations and fluxes were in a range of 15.8-84.9 nmol L^-1 and 0.66-22.2 µg m^-2 h^-1, respectively. These studied estuaries were oversaturated in N₂O, with the saturations of 118-615%. Water dissolved N₂O concentrations, saturations and fluxes increased significantly as nitrogen concentrations increase, whereas they did not differ significantly between the wet and dry seasons. Water N₂O emissions, however, were also lower in the estuaries characterized by large discharge and water flow. N₂O saturations and fluxes were determined directly by water nitrogen and oxygen concentrations and more indirectly by water temperature and velocity. The δ¹⁵N-N₂O and site preference-N₂O varied respectively from 2.86 to 11.31‰ and from 1.58 to 11.72‰, which overlapped the values between nitrification and denitrification. Nitrification and denitrification were responsible for 18.7-38.1% and 61.9-81.3% of N₂O emissions, respectively. Indirect N₂O emission factors were 0.08-0.14% and decreased with increasing total nitrogen concentrations. It is estimated that water N₂O emissions in CO₂ equiv could offset approximately 4.9% of average CO₂ sink of China estuaries. Therefore, these results suggest that nitrogen concentrations and hydrologic characteristics together modify N₂O emissions and that estuaries may be the important contributors to N₂O emissions.

Submerged macrophytes regulate diurnal nitrous oxide emissions from a shallow eutrophic lake: A case study of Lake Wuliangsuhai in the temperate arid region of China

Submerged macrophytes can increase oxygen concentrations of water and promote diel oxygen fluctuations, and this phenomenon is hypothesized to play a vital role in regulating nitrous oxide (N₂O) emissions from eutrophic lakes. However, the effects of submerged macrophytes on N₂O emissions in shallow eutrophic lakes remain poorly investigated. In this study, Lake Wuliangsuhai, a typical shallow eutrophic lake, was investigated to study the role of submerged macrophytes in regulating N₂O emissions. We measured the N₂O fluxes and related parameters through continual 72-h in situ diel monitoring in two sampling sections that covered dense submerged macrophyte areas and open water. In this study, the dissolved oxygen (DO) concentration of the water in the submerged macrophyte area exhibited significant diurnal variations, with significantly higher water oxygen concentrations than the open water area during the daytime. The N₂O fluxes of Lake Wuliangsuhai ranged from 0.01 to 0.24 μmol m^-2 h^-1, with an average value of 0.11 μmol m^-2 h^-1. Moreover, significant diel variations in the N₂O flux and net N₂O production were observed in the submerged macrophyte areas, where the maximum N₂O flux occurred at midday. The molar ratios of NH₄⁺-N to oxygen (N/O ratio) of the water were responsible for the diel variations in the N₂O production in the lake. However, the high oxygen concentration of the water was the major regulator of the N₂O flux of Lake Wuliangsuhai. Therefore, submerged macrophyte restoration is significant not only for water quality improvement in shallow eutrophic lakes but also for N₂O emission mitigation by increasing the DO concentration of the water.

Application of the research electronic data capture (REDCap) system in a low- and middle income country- experiences, lessons, and challenges

The challenges of reliably collecting, storing, organizing, and analyzing research data are critical in low- and middle-income countries (LMICs), particularly in Sub-Saharan Africa where several healthcare and biomedical research organizations have limited data infrastructure. The Research Electronic Data Capture (REDCap) System has been widely used by many institutions and hospitals in the USA for data collection, entry, and management and could help solve this problem. This study reports on the experiences, challenges, and lessons learned from establishing and applying REDCap for a large US-Nigeria research partnership that includes two sites in Nigeria, (the College of Medicine of the University of Lagos (CMUL) and Jos University Teaching Hospital (JUTH)) and Northwestern University (NU) in Chicago, Illinois in the United States. The largest challenges to this implementation were significant technical obstacles: the lack of REDCap-trained personnel, transient electrical power supply, and slow/intermittent internet connectivity. However, asynchronous communication and on-site hands-on collaboration between the Nigerian sites and NU led to the successful installation and configuration of REDCap to meet the needs of the Nigerian sites. An example of one lesson learned is the use of Virtual Private Network (VPN) as a solution to poor internet connectivity at one of the sites, and its adoption is underway at the other. Virtual Private Servers (VPS) or shared online hosting were also evaluated and offer alternative solutions. Installing and using REDCap in LMIC institutions for research data management is feasible; however, planning for trained personnel and addressing electrical and internet infrastructural requirements are essential to optimize its use. Building this fundamental research capacity within LMICs across Africa could substantially enhance the potential for more cross-institutional and cross-country collaboration in future research endeavors.

Microbial dynamics and activity of denitrifying anaerobic methane oxidizers in China's estuarine and coastal wetlands

Estuarine and coastal wetlands, which act as large sources of methane (CH₄) and undergo substantial loading of anthropogenic nitrogen (N), provide ideal conditions for denitrifying anaerobic methane oxidation (DAMO) to occur. Yet the microbial mechanisms governing DAMO and the main driving factors in estuarine and coastal ecosystems remain unclear. This study investigated the spatiotemporal distribution and associated activity of DAMO microorganisms along a wide swath of China's coastline (latitudinal range: 22-41°N) using molecular assays and isotope tracing techniques. We uncovered significant spatial and seasonal variation in DAMO bacterial community structure, whereas DAMO archaeal community structure exhibited no seasonal differences. The abundance of DAMO bacterial pmoA gene (2.2 × 10⁵-1.0 × 10⁷ copies g^-1) was almost one order of magnitude higher than that of DAMO archaeal mcrA gene (8.7 × 10⁴ -1.8 × 10⁶ copies g^-1). A significant positive correlation between pmoA and mcrA gene abundances (p < 0.01) was observed, indicating that DAMO bacteria and archaea may cooperate closely and thus complete nitrate elimination. Potential DAMO rates, in the range of 0.09-23.4 nmol ¹³CO₂ g^-1 day^-1 for nitrite-DAMO and 0.03-43.7 nmol ¹³CO₂ g^-1 day^-1 for nitrate-DAMO, tended to be greater in the relatively warmer low-latitudes. Potential DAMO rates were weakly positively correlated with gene abundances, suggesting that DAMO microbial activity could not be predicted directly by gene abundance alone. The heterogeneous variability of DAMO was shaped by interactions among key environmental characteristics (sediment texture, N availability, TOC, Fe³⁺, salinity of water, and temperature). On a broader continental scale, potential N removal rates of 0.1-11.2 g N m^-2 yr^-1 were estimated via nitrite-DAMO activity in China's coastal wetlands. Overall, our results highlight the widespread distribution of DAMO microbes and their potential role in eliminating excess N inputs and reducing CH₄ emissions in estuarine and coastal ecosystems, which could help mitigate global warming.

A microporous anionic metal–organic framework for aqueous encapsulation and highly reversible sensitization of light-emitting Tb3+ ions

An anionic porous material can serve as both a host and an antenna for protecting and sensitizing extra-framework light-emitting Eu3+/Tb3+ ions. The Tb3+ uptake and release is a reversible process and the cationic Tb3+ can be gradually released.

Biodegradability of polyethylene mulching film by two Pseudomonas bacteria and their potential degradation mechanism

Wasted polyethylene (PE) products caused pollution has become a global issue. Researchers have identified PE-degrading bacteria which have been considered as a sustainable alleviation to this crisis. However, the degradation mechanism employed by currently isolated bacteria is unclear and their degradation efficiencies are insufficient. More importantly, there is little research into bacteria capable of degrading PE mulching film to solve "white" pollution in agriculture. We determined the PE degradation efficiency of two Pseudomonas, identified by 16S rDNA analysis, and elucidated their potential mechanisms through whole genome sequencing. During an 8-week period, PE mulch lost 5.95 ± 0.03% and 3.62 ± 0.32% of its mass after incubated with P. knackmussii N1-2 and P. aeruginosa RD1-3 strains, respectively. Moreover, considerable pits and wrinkles were observed on PE.The hydrophobicity of PE films also decreased, and new oxygenic functional groups were detected on PE mulch by Fourier Transform Infrared Spectrometry (FTIR). Complete genome sequencing analysis indicated that two Pseudomonas strains encode genes for enzymes and metabolism pathways involved in PE degradation. The results provide a theoretical basis for further research that investigates the mechanism driving the degradation and metabolism of discarded PE in the environment.

Crab bioturbation alters nitrogen cycling and promotes nitrous oxide emission in intertidal wetlands: Influence and microbial mechanism

Intertidal wetlands provide important ecosystem functions by acting as nitrogen (N) cycling hotspots, which can reduce anthropogenic N loading from land to coastal waters. Benthic bioturbations are thought to play an important role in mediating N cycling in intertidal marshes. However, how the burrowing activity of benthos and their microbial symbionts affect N transformation and greenhouse gas nitrous oxide (N₂O) emission remains unclear in these environments. Here, we show that bioturbation of crabs reshaped the structure of intertidal microbial communities and their N cycling function. Molecular analyses suggested that the microbially-driven N cycling might be accelerated by crab bioturbation, as the abundances of most of the N related functional genes were higher on the burrow wall than those in the surrounding bulk sediments, except for genes involved in N fixation, dissimilatory nitrate reduction to ammonium (DNRA), and N₂O reduction, which were further confirmed by isotope-tracing experiments. Especially, the potential rates of the main N₂O production pathways, nitrification and denitrification, were 2-3 times higher in the burrow wall sediments. However, even higher N₂O emission rates (approximately 6 times higher) were observed in this unique microhabitat, which was due to a disproportionate increase in N₂O production over N₂O consumption driven by burrowing activity. In addition, the sources of N₂O were also significantly affected by crab bioturbation, which increased the contribution of hydroxylamine oxidation pathway. This study reveals the mechanism through which benthic bioturbations mediate N cycling and highlights the importance of considering burrowing activity when evaluating the ecological function of intertidal wetlands.

Salinity gradients shape the nitrifier community composition in Nanliu River Estuary sediments and the ecophysiology of comammox Nitrospira inopinata

The recent discovery of complete ammonia oxidizers (comammox), which convert ammonia to nitrate in a single organism, revolutionized the conventional understanding that two types of nitrifying microorganisms have to be involved in the nitrification process for more than 100 years. However, how different types of nitrifiers in response to salinity change remains largely unclear. This study not only investigated nitrifier community (including ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), comammox and nitrite-oxidizing Nitrospira) in the Nanliu estuary to find the ecological relationship between salinity and functional communities and also studied the physiology of a typical comammox Nitrospira inopinata in response to a salinity gradient. Based on sequences retrieved with four sets of functional gene primes, comammox Nitrospira was in general, mainly composed of clade A, with a clear separation of clade A1 subgroup in all samples and clade A2 subgroup in low salinity ones. As expected, group I.1b and group I.1a AOA dominated the AOA community in low- and high-salinity samples, respectively. Nitrosomonas-AOB were detected in all samples while Nitrosospira-AOB were mainly found in relatively high-salinity samples. Regarding general Nitrospira, lineages II and IV were the major groups in most of the samples, while lineage I Nitrospira was only detected in low-salinity samples. Furthermore, the comammox pure culture of N. inopinata showed an optimal salinity at 0.5‰ and ceased to grow at 12.8‰ for ammonia oxidation, but remained active for nitrite oxidation. These results show new evidence regarding niche specificity of different nitrifying microorganisms modulated mainly by salinity, and also a clear response by comammox N. inopinata to a wide range of simulated salinity levels.