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Levard T, Diglio PJ, Lu SG, Rahn CD, Zhang QM. Core-free rolled actuators for Braille displays using P(VDF-TrFE-CFE). SMART MATERIALS & STRUCTURES 2011; 21:012001. [PMID: 30515025 PMCID: PMC6275103 DOI: 10.1088/0964-1726/21/1/012001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Refreshable Braille displays require many small diameter actuators to move the pins. The electrostrictive P(VDF-TrFE-CFE) terpolymer can provide the high strain and actuation force under modest electric fields that are required for this application. In this paper, we develop core-free tubular actuators and integrate them into a 3 × 2 Braille cell. The terpolymer films are solution cast, stretched to 6 μm thick, electroded, laminated into a bilayer, rolled into a 2 mm diameter tube, bonded, and provided with top and bottom contacts. Experimental testing of 17 actuators demonstrates significant strains (up to 4%) and blocking forces (1 N) at moderate electric fields (100 MV m-1). A novel Braille cell is designed and fabricated using six of these actuators.
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Xu H, Bharti V, Cheng ZY, Zhang QM. Conduction Behavior of Doped Polyaniline Under High Current Density and the Performance of an all Polymer Electromechanical System. ACTA ACUST UNITED AC 2011. [DOI: 10.1557/proc-600-185] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
AbstractIn many device applications, such as electro-acoustic transducers and actuators based on high strain electroactive polymers, there are many advantages to utilize conductive polymers as electrodes. However, in these applications, a high electric power usually is required which translates to high voltage and high current in the system. Hence, the maximum current density which a conducting polymer can carry is of great interest and importance. In this paper, the conduction behavior at high current density of doped polyaniline(PANI) is reported. It was found that the current density deviates strongly from the ohmic relation with the electric field in high current density region and a saturation of the current density was observed. The maximum current density Jm observed is proportional to the conductivity of the samples and for PANI doped with HCSA, Jm can reach as high as 1200 A/cm2. Making use of the conducting polymer as the electrodes for the electrostrictive P(VDF-TrFE) copolymer, an all-polymer electromechanical system was fabricated. The all-polymer films exhibit similar or larger electric field induced strain responses than those from films with gold electrodes, presumably due to reduced mechanical clamping from the electrodes. In addition, the all-polymer system also exhibits comparable dielectric and polarization properties to those of gold-electroded P(VDF-TrFE) films in a wide temperature (from −50°C to 120°C) and frequency range (from 1Hz to 1MHz). These results demonstrate that polyaniline can be used for many electro-acoustic devices and provide improved performance.
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Lin J, Liu Y, Zhang QM. Charge Dynamics and Bending Actuation in Aquivion Membrane Swelled with Ionic Liquids. POLYMER 2011; 52:540-546. [PMID: 21339839 DOI: 10.1016/j.polymer.2010.11.030] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The actuation strain and speed of ionic electroactive polymer (EAP) actuators are mainly determined by the charge transport through the actuators and excess ion storage near the electrodes. We employ a recently developed theory on ion transport and storage to investigate the charge dynamics of short-side-chain Aquivion® (Hyflon®) membranes with different uptakes of ionic liquid (IL) 1-ethyl-3-methylimidazolium trifluoromethanesulfonate (EMI-Tf). The results reveal the existence of a critical uptake of ionic liquids above which the membrane exhibit a high ionic conductivity (σ>5×10(-2) mS/cm). Especially, we investigate the charge dynamics under voltages which are in the range for practical device operation (~1 volts and higher). The results show that the ionic conductivity, ionic mobility, and mobile ion concentration do not change with the applied voltage below 1 volt (and for σ below 4 volts). The results also show that bending actuation of the Aquivion membrane with 40 wt% EMI-Tf is much larger than that of Nafion, indicating that the shorter flexible side chains improve the electromechanical coupling between the excess ions and the membrane backbones, while not affect the actuation speed.
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Liu S, Liu Y, Cebeci H, de Villoria RG, Lin JH, Wardle BL, Zhang QM. High Electromechanical Response of Ionic Polymer Actuators with Controlled-Morphology Aligned Carbon Nanotube/Nafion Nanocomposite Electrodes. ADVANCED FUNCTIONAL MATERIALS 2010; 20:3266-3271. [PMID: 21765822 PMCID: PMC3134233 DOI: 10.1002/adfm.201000570] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Recent advances in fabricating controlled-morphology vertically aligned carbon nanotubes (VA-CNTs) with ultrahigh volume fraction create unique opportunities for markedly improving the electromechanical performance of ionic polymer conductor network composite (IPCNC) actuators. Continuous paths through inter-VA-CNT channels allow fast ion transport, and high electrical conduction of the aligned CNTs in the composite electrodes lead to fast device actuation speed (>10% strain/second). One critical issue in developing advanced actuator materials is how to suppress the strain that does not contribute to the actuation (unwanted strain) thereby reducing actuation efficiency. Here our experiments demonstrate that the VA-CNTs give an anisotropic elastic response in the composite electrodes, which suppresses the unwanted strain and markedly enhances the actuation strain (>8% strain under 4 volts). The results reported here suggest pathways for optimizing the electrode morphology in IPCNCs using ultra-high volume fraction VA-CNTs to further enhanced performance.
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Zhang AM, Xia TL, Kong LR, Xiao JH, Zhang QM. Effects on superconductivity of transition-metal doping in FeSe(0.5)Te(0.5). JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:245701. [PMID: 21393789 DOI: 10.1088/0953-8984/22/24/245701] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We investigate superconductivity in the compound FeSe(0.5)Te(0.5) and in its transition-metal-substituted derivatives Fe(1-x)TM(x)Se(0.5)Te(0.5), where x = 5% and the substituent ions studied were Mn, Co, Ni, Cu and Zn. Electronic and magnetic measurements indicate that doping with Mn or by Co acts respectively to cause a slight enhancement or suppression of the transition temperature. However, doping with this concentration of Ni or Cu destroys the superconductivity completely, and leads to semiconducting behaviour. Zn ions cannot be incorporated properly into the parent compound. The reasons for these contrasting effects are associated with the differing magnetic properties of the substituent ions, which determine their local impurity moments and the net carrier concentrations in the doped 11 system. The effects of magnetic ion substitution on superconductivity suggest that the pairing symmetry may not be either pure s wave or pure d wave.
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Chang PW, Zhang QM, Takatori K, Tachibana A, Yonei S. Increased sensitivity to sparsely ionizing radiation due to excessive base excision in clustered DNA damage sites inEscherichia coli. Int J Radiat Biol 2009; 81:115-23. [PMID: 16019921 DOI: 10.1080/09553000500103009] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
PURPOSE In order to clarify the cellular processing and repair mechanisms for radiation-induced clustered DNA damage, we examined the correlation between the levels of DNA glycosylases and the sensitivity to ionizing radiation in Escherichia coli. MATERIALS AND METHODS The lethal effects of gamma-rays, X-rays, alpha-particles and H2O2 were determined in E. coli with different levels of DNA glycosylases. The formation of double-strand breaks by post-irradiation treatment with DNA glycosylase was assayed with gamma-irradiated plasmid DNA in vitro. RESULTS An E. coli mutM nth nei triple mutant was less sensitive to the lethal effect of sparsely ionizing radiation (gamma-rays and X-rays) than the wild-type strain. Overproduction of MutM (8-oxoguanine-DNA glycosylase), Nth (endonuclease III) and Nei (endonulease VIII) increased the sensitivity to gamma-rays, whereas it did not affect the sensitivity to alpha-particles. Increased sensitivity to gamma-rays also occurred in E. coli overproducing human 8-oxoguanine-DNA glycosylase (hOgg1). Treatment of gamma-irradiated plasmid DNA with purified MutM converted the covalently closed circular to the linear form of the DNA. On the other hand, overproduction of MutM conferred resistance to H2O2 on the E. coli mutM nth nei mutant. CONCLUSIONS The levels of DNA glycosylases affect the sensitivity of E. coli to gamma-rays and X-rays. Excessive excision by DNA glycosylases converts nearly opposite base damage in clustered DNA damage to double-strand breaks, which are potentially lethal.
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Neese B, Chu B, Lu SG, Wang Y, Furman E, Zhang QM. Large Electrocaloric Effect in Ferroelectric Polymers Near Room Temperature. Science 2008; 321:821-3. [DOI: 10.1126/science.1159655] [Citation(s) in RCA: 831] [Impact Index Per Article: 51.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Wang Y, Neese B, Zhang QM, Huang C, West J. P6H-10 High Piezoelectric Responses in P(VDF HFP) Copolymers for Sensors and Transducers. ACTA ACUST UNITED AC 2007. [DOI: 10.1109/ultsym.2007.656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Bao HM, Song JF, Zhang J, Shen QD, Yang CZ, Zhang QM. Phase Transitions and Ferroelectric Relaxor Behavior in P(VDF−TrFE−CFE) Terpolymers. Macromolecules 2007. [DOI: 10.1021/ma062800l] [Citation(s) in RCA: 105] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Chu B, Zhou X, Ren K, Neese B, Lin M, Wang Q, Bauer F, Zhang QM. A Dielectric Polymer with High Electric Energy Density and Fast Discharge Speed. Science 2006; 313:334-6. [PMID: 16857935 DOI: 10.1126/science.1127798] [Citation(s) in RCA: 555] [Impact Index Per Article: 30.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Dielectric polymers with high dipole density have the potential to achieve very high energy density, which is required in many modern electronics and electric systems. We demonstrate that a very high energy density with fast discharge speed and low loss can be obtained in defect-modified poly(vinylidene fluoride) polymers. This is achieved by combining nonpolar and polar molecular structural changes of the polymer with the proper dielectric constants, to avoid the electric displacement saturation at electric fields well below the breakdown field. The results indicate that a very high dielectric constant may not be desirable to reach a very high energy density.
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Wang JW, Shen QD, Bao HM, Yang CZ, Zhang QM. Microstructure and Dielectric Properties of P(VDF−TrFE−CFE) with Partially Grafted Copper Phthalocyanine Oligomer. Macromolecules 2005. [DOI: 10.1021/ma047890d] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ye YH, Ding J, Jeong DY, Khoo IC, Zhang QM. Finite-size effect on one-dimensional coupled-resonator optical waveguides. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:056604. [PMID: 15244960 DOI: 10.1103/physreve.69.056604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2003] [Indexed: 05/24/2023]
Abstract
We study the finite-size effect on the dispersion relation, group velocity, and transmission curves of one-dimensional finite-size coupled-resonator optical waveguide (CROW) structures. Both the dispersion relation and the group velocity curves of a finite-size CROW oscillate along those of the corresponding infinite-extended ones. The oscillations can be suppressed by matching the equivalent admittance of the surrounding medium to that of the unit cell. Thelen's method is used to find the parameters of the matching layer to reduce oscillations on the group velocity and transmission spectra, and to analyze the structure parameters that determine the bandwidth and the group velocity.
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Bobnar V, Levstik A, Huang C, Zhang QM. Distinctive contributions from organic filler and relaxorlike polymer matrix to dielectric response of CuPc-P(VDF-TrFE-CFE) composite. PHYSICAL REVIEW LETTERS 2004; 92:047604. [PMID: 14995406 DOI: 10.1103/physrevlett.92.047604] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2003] [Indexed: 05/24/2023]
Abstract
The dielectric response of copper-phthalocyanine (CuPc) oligomers embedded in a poly(vinylidene fluoride-trifluoroethylene-chlorofluoroethylene) terpolymer matrix was studied. Although admixture of CuPc strongly increases the dielectric constant of the terpolymer at all temperatures, each of the two constituents determines the dielectric dynamics in a different temperature region-the relaxorlike matrix above and CuPc below the terpolymer's freezing temperature. Two relaxations, reflecting the charge carriers' response in CuPc, were detected. Results on ac conductivity reveal that the tunneling of polarons is the dominating charge transport mechanism.
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Klein RJ, Runt J, Zhang QM. Influence of Crystallization Conditions on the Microstructure and Electromechanical Properties of Poly(vinylidene fluoride−trifluoroethylene−chlorofluoroethylene) Terpolymers. Macromolecules 2003. [DOI: 10.1021/ma034745b] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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65
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Bobnar V, Vodopivec B, Levstik A, Kosec M, Hilczer B, Zhang QM. Dielectric Properties of Relaxor-like Vinylidene Fluoride−Trifluoroethylene-Based Electroactive Polymers. Macromolecules 2003. [DOI: 10.1021/ma034149h] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Zhang QM, Hashiguchi K, Kino K, Sugiyama H, Yonei S. Ntg1 and Ntg2 proteins as 5-formyluracil-DNA glycosylases/AP lyases in Saccharomyces cerevisiae. Int J Radiat Biol 2003; 79:341-9. [PMID: 12943242 DOI: 10.1080/0955300032000093119] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
PURPOSE 5-Formyluracil (5-foU) is a potentially mutagenic lesion of thymine produced in DNA by ionizing radiation and various chemical oxidants. The present authors reported previously that MutM, Nth and Nei in Escherichia coli removed 5-foU from DNA. The present study identified 5-foU DNA glycosylases in Saccharomyces cerevisiae in order to clarify the repair mechanisms of 5-foU in eukaryotic cells. MATERIALS AND METHODS The borohydride-trapping assay and DNA-nicking assay were carried out to detect and characterize the repair activities for 5-foU in extracts from S. cerevisiae with oligonucleotides containing 5-foU at specific sites. RESULTS Two proteins in crude extracts from S. cerevisiae formed covalent complexes with oligonucleotides containing site-specific 5-foU in the presence of NaBH4. Extracts from S. cerevisiae strains defective in either the NTG1 or the NTG2 gene lacked either one or the other of these two proteins. Purified Ntg1 and Ntg2 were trapped in such complexes by the 5-foU-containing oligonucleotides in the presence of NaBH4. Furthermore, purified Ntg1 and Ntg2 efficiently cleaved the oligonucleotide at the 5-foU site. CONCLUSIONS The results indicate that both Ntg1 and Ntg2 are involved in the repair of 5-foU in DNA, and thereby serve to reduce mutations in S. cerevisiae.
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Xia F, Wang YK, Li H, Huang C, Ma Y, Zhang QM, Cheng ZY, Bateman FB. Influence of the annealing conditions on the polarization and electromechanical response of high-energy-electron-irradiated poly(vinylidene fluoride trifluoroethylene) copolymer. ACTA ACUST UNITED AC 2003. [DOI: 10.1002/polb.10662] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Zhang QM, Li H, Poh M, Xia F, Cheng ZY, Xu H, Huang C. An all-organic composite actuator material with a high dielectric constant. Nature 2002; 419:284-7. [PMID: 12239563 DOI: 10.1038/nature01021] [Citation(s) in RCA: 330] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Electroactive polymers (EAPs) can behave as actuators, changing their shape in response to electrical stimulation. EAPs that are controlled by external electric fields--referred to here as field-type EAPs--include ferroelectric polymers, electrostrictive polymers, dielectric elastomers and liquid crystal polymers. Field-type EAPs can exhibit fast response speeds, low hysteresis and strain levels far above those of traditional piezoelectric materials, with elastic energy densities even higher than those of piezoceramics. However, these polymers also require a high field (>70 V micro m(-1)) to generate such high elastic energy densities (>0.1 J cm(-3); refs 4, 5, 9, 10). Here we report a new class of all-organic field-type EAP composites, which can exhibit high elastic energy densities induced by an electric field of only 13 V micro m(-1). The composites are fabricated from an organic filler material possessing very high dielectric constant dispersed in an electrostrictive polymer matrix. The composites can exhibit high net dielectric constants while retaining the flexibility of the matrix. These all-organic actuators could find applications as artificial muscles, 'smart skins' for drag reduction, and in microfluidic systems for drug delivery.
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Hashiguchi K, Zhang QM, Sugiyama H, Ikeda S, Yonei S. Characterization of 2-hydroxyadenine DNA glycosylase activity of Escherichia coli MutY protein. Int J Radiat Biol 2002; 78:585-92. [PMID: 12079537 DOI: 10.1080/09553000210130560] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Abstract
PURPOSE 2-Hydroxyadenine (2-ohA) is an oxidation product of adenine generated in DNA by ionizing radiation and various chemical oxidants. 2-ohA has mutational potential comparable to that of 8-oxoguanine in bacteria and mammalian cells. Recent studies have shown that 2-ohA is removed from DNA by a human MutY homolog, MYH protein, in vitro. On the other hand, the repair mechanisms for 2-ohA in Escherichia coli are not yet understood. MATERIALS AND METHODS Gel shift assays were used to assess the binding activity of E. coli full-length MutY protein and its N-terminal (residues 1-226) domain (M25) to 2-ohA/G-, 2-ohA/A-, 2-ohA/C- and 2-ohA/T-containing 24-mer oligonucleotides. Furthermore, whether these proteins specifically cleave 2-ohA-containing duplex oligonucleotides was examined. RESULTS The purified MutY and M25 proteins had similar binding affinities to 2-ohA/G-, 2-ohA/A- and 2-ohA/C-containing oligonucleotides. MutY protein removed 2-ohA preferentially from 2-ohA/G mispairs. M25 protein showed the reduced catalytic activity for 2-ohA/G-containing oligonucleotides. CONCLUSIONS E. coli MutY protein has a DNA glycosylase activity that removes 2-ohA from 2-ohA/G mispairs in DNA. The C-terminal domain is required for the removal of 2-ohA from DNA, but is not crucial for binding to 2-ohA-containing oligonucleotides.
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Cheng ZY, Olson D, Xu H, Xia F, Hundal JS, Zhang QM, Bateman FB, Kavarnos GJ, Ramotowski T. Structural Changes and Transitional Behavior Studied from Both Micro- and Macroscale in the High-Energy Electron-Irradiated Poly(vinylidene fluoride−trifluoroethylene) Copolymer. Macromolecules 2001. [DOI: 10.1021/ma0112265] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Matsumoto Y, Zhang QM, Takao M, Yasui A, Yonei S. Escherichia coli Nth and human hNTH1 DNA glycosylases are involved in removal of 8-oxoguanine from 8-oxoguanine/guanine mispairs in DNA. Nucleic Acids Res 2001; 29:1975-81. [PMID: 11328882 PMCID: PMC37258 DOI: 10.1093/nar/29.9.1975] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. That the spontaneous mutation frequency of the Escherichia coli mutT mutant is much higher than that of the mutM or mutY mutant indicates a significant potential for mutation due to 8-oxoG incorporation opposite A and G during DNA replication. In fact, the removal of A and G in such a situation by MutY protein would fix rather than prevent mutation. This suggests the need for differential removal of 8-oxoG when incorporated into DNA, versus being generated in situ. In this study we demonstrate that E.coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. The MutM and Nei proteins are also capable of removing 8-oxoG from mispairs. The frequency of spontaneous G:C-->C:G transversions was significantly increased in E.coli CC103mutMnthnei mutants compared with wild-type, mutM, nth, nei, mutMnei, mutMnth and nthnei strains. From these results it is concluded that Nth protein, together with the MutM and Nei proteins, is involved in the repair of 8-oxoG when it is incorporated opposite G. Furthermore, we found that human hNTH1 protein, a homolog of E.coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs.
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Zhang QM. Role of the Escherichia coli and human DNA glycosylases that remove 5-formyluracil from DNA in the prevention of mutations. JOURNAL OF RADIATION RESEARCH 2001; 42:11-19. [PMID: 11393886 DOI: 10.1269/jrr.42.11] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Ionizing radiation induces a wide variety of modifications to purine and pyrimidine residues. The exocyclic methyl group of thymine does not escape oxidative damage. Any 5-hydroperoxymethyluracil produced is spontaneously decomposed to form 5-formyluracil (5-foU) and 5-hydroxymethyluracil. The yield of 5-foU by ionizing radiation is roughly the same as that of 8-oxoguanine. 5-foU is a potential mutagenic damage in vitro and in vivo. Mammalian cells have an activity that removes 5-foU from X-irradiated DNA. Furthermore, the Nth, Nei and MutM proteins of E. coli have DNA glycosylase/AP lyase activities that recognize and remove 5-foU in DNA. The mutation frequency of 5-foU-containing plasmid increases when replicated in E. coli nthneimutMalkA. Single mutations in the nth, nei or mutM gene do not affect the mutation frequency. Therefore, these gene products are likely backup enzymes used to repair 5-foU in DNA. Furthermore, the human hNTH1 enzyme, a homologue of E. coli Nth, is found to have similar DNA glycosylase activity to that of the Nth protein.
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Miyabe I, Zhang QM, Sugiyama H, Kino K, Yonei S. Mutagenic effects of 5-formyluracil on a plasmid vector during replication in Escherichia coli. Int J Radiat Biol 2001; 77:53-8. [PMID: 11213350 DOI: 10.1080/095530001453113] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Abstract
PURPOSE 5-Formyluracil (5-foU) is a major derivative of thymine produced in DNA by ionizing radiation and various chemical oxidants. It has been previously shown that 5-foU in template DNA directs misincorporation of nucleotides by DNA polymerases during in vitro DNA synthesis. The present experiments were designed to understand the biological effects of5-foU in vivo. MATERIALS AND METHODS The modified base was incorporated site-specifically into the recognition site of restriction endonuclease SalI (5'-GTCGAC) or AflII (5'-CTTAAG) in vector plasmid pSVK3 and introduced the plasmid into Escherichia coli. RESULTS When the plasmids were replicated in E. coli, 5-foU caused mutations at the target sites. The induced mutation frequencies were 0.038-0.049%. Sequence analysis revealed that 5-foU preferentially caused T:A-->C:G and T:A-->A:T base substitutions and -1 deletions at the 5-foU site. 5-FoU also caused mutations at sites near the 5-foU. The alkA mutation did not affect the frequency of mutations in 5-foU-containing plasmids. CONCLUSIONS The present experiments demonstrated that 5-formyluracil in DNA caused mutations in E. coli.
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Zhang QM, Miyabe I, Matsumoto Y, Kino K, Sugiyama H, Yonei S. Identification of repair enzymes for 5-formyluracil in DNA. Nth, Nei, and MutM proteins of Escherichia coli. J Biol Chem 2000; 275:35471-7. [PMID: 10956660 DOI: 10.1074/jbc.m006125200] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
5-Formyluracil (5-foU) is a potentially mutagenic lesion of thymine produced in DNA by ionizing radiation and various chemical oxidants. Although 5-foU has been reported to be removed from DNA by Escherichia coli AlkA protein in vitro, its repair mechanisms are not fully understood. In this study, we used the borohydride trapping assay to detect and characterize repair activities for 5-foU in E. coli extracts with site-specifically designed oligonucleotides containing a 5-foU at defined sites. The trapping assay revealed that there are three kinds of proteins that form covalent complexes with the 5-foU-containing oligonucleotides. Extracts from strains defective in the nth, nei, or mutM gene lacked one of the proteins. All of the trapped complexes were completely lost in extracts from the nth nei mutM triple mutant. The introduction of a plasmid carrying the nth, nei, or mutM gene into the E. coli triple mutant restored the formation of the corresponding protein-DNA complex. Purified Nth, Nei, and MutM proteins were trapped by the 5-foU-containing oligonucleotide to form the complex in the presence of NaBH(4). Furthermore, the purified Nth, Nei, and MutM proteins efficiently cleaved the oligonucleotide at the 5-foU site. In addition, 5-foU was site-specifically incorporated into plasmid pSVK3, and the resulting plasmid was replicated in E. coli. The mutation frequency of the plasmid was significantly increased in the E. coli nth nei mutM alkA mutant, compared with the wild-type and alkA strains. From these results it is concluded that the Nth, Nei, and MutM proteins are involved in the repair pathways for 5-foU that serve to avoid mutations in E. coli.
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Nakahara T, Zhang QM, Hashiguchi K, Yonei S. Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. Nucleic Acids Res 2000; 28:2551-6. [PMID: 10871405 PMCID: PMC102710 DOI: 10.1093/nar/28.13.2551] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The pathways leading to G:C-->C:G transversions and their repair mechanisms remain uncertain. C/C and G/G mismatches arising during DNA replication are a potential source of G:C-->C:G transversions. The Escherichia coli mutHLS mismatch repair pathway efficiently corrects G/G mismatches, whereas C/C mismatches are a poor substrate. Escherichia coli must have a more specific repair pathway to correct C/C mismatches. In this study, we performed gel-shift assays to identify C/C mismatch-binding proteins in cell extracts of E. COLI: By testing heteroduplex DNA (34mers) containing C/C mismatches, two specific band shifts were generated in the gels. The band shifts were due to mismatch-specific binding of proteins present in the extracts. Cell extracts of a mutant strain defective in MutM protein did not produce a low-mobility complex. Purified MutM protein bound efficiently to the C/C mismatch-containing heteroduplex to produce the low-mobility complex. The second protein, which produced a high-mobility complex with the C/C mismatches, was purified to homogeneity, and the amino acid sequence revealed that this protein was the FabA protein of E.COLI: The high-mobility complex was not formed in cell extracts of a fabA mutant. From these results it is possible that MutM and FabA proteins are components of repair pathways for C/C mismatches in E.COLI: Furthermore, we found that Saccharomyces cerevisiae OGG1 protein, a functional homolog of E.COLI: MutM protein, could specifically bind to the C/C mismatches in DNA.
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