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Zhang L, Chen YF, Che YX, Xu YF, Zheng J, Yu SJ. The impact of adaptive iterative dose reduction 3D on the improvement of shoulder image quality in head and neck CTA. Curr Med Res Opin 2019; 35:887-891. [PMID: 30366505 DOI: 10.1080/03007995.2018.1541446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
OBJECTIVE The aim of this study was to determine the impact of adaptive iterative dose reduction 3 D (AIDR3D) on the improvement of shoulder image quality in low-radiographic dose head and neck CT angiography (CTA). MATERIALS AND METHODS Ninety patients who underwent CTA examination were randomly divided into two groups, namely group A (n = 45) and B (n = 45). Patients in group A were scanned under 120 kV and 300 mA, with images reconstructed by filtered back projection (FBP), and patients in group B were scanned under 80 kV and auto mA with images reconstructed by AIDR3D. Image quality was accessed by two experienced radiologists. The noise, signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) of common carotid artery (CCA) at C7 level, and radiation dosage were compared between the two groups. RESULTS The score of CCA in group B was significantly higher than group A (p < 0.05), and there were no significant differences in the scores of carotid sinus and internal carotid artery between the two groups (p > 0.05). The score of intracranial artery in group B was lower than that of group A, however, the image quality in group B can meet the requirement of clinical diagnosis. The noise value of CCA at C7 level in group B was significantly lower than that of group A (p < 0.05). SNR and CNR values of CCA at C7 level in group B were significantly higher than those of group A (p < 0.05). Effective radiation dose in group B was significantly decreased compared with group A (p < 0.05). CONCLUSION AIDR3D remarkably improved image quality in low-radiographic dose head and neck CTA over FBP, which made the low-dose CTA images meet the requirement of clinical diagnosis.
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Affiliation(s)
- Li Zhang
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
| | - Yue-Feng Chen
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
| | - Yan-Xu Che
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
| | - Yan-Feng Xu
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
| | - Jing Zheng
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
| | - Shu-Jing Yu
- a Department of CT Diagnosis , Cangzhou Central Hospital , Cangzhou , Hebei 061001 , PR China
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152
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Bai Q, Wang Q, Wang D, Wang Y, Gao Y, Zhang H, Zhang M, Jin B. Recent Advances in Brillouin Optical Time Domain Reflectometry. Sensors (Basel) 2019; 19:E1862. [PMID: 31003510 DOI: 10.3390/s19081862] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Revised: 04/12/2019] [Accepted: 04/16/2019] [Indexed: 11/17/2022]
Abstract
In the past two decades Brillouin-based sensors have emerged as a newly-developed optical fiber sensing technology for distributed temperature and strain measurements. Among these, the Brillouin optical time domain reflectometer (BOTDR) has attracted more and more research attention, because of its exclusive advantages, including single-end access, simple system architecture, easy implementation and widespread field applications. It is realized mainly by injecting optical pulses into the fiber and detecting the Brillouin frequency shift (BFS), which is linearly related to the change of ambient temperature and axial strain of the sensing fiber. In this paper, the authors provide a review of new progress on performance improvement and applications of BOTDR in the last decade. Firstly, the recent advances in improving the performance of BOTDRs are summarized, such as spatial resolution, signal-to-noise ratio and measurement accuracy, measurement speed, cross sensitivity and other properties. Moreover, novel-type optical fibers bring new characteristics to optic fiber sensors, hence we introduce the different Brillouin sensing features of special fibers, mainly covering the plastic optical fiber, photonic crystal fiber, few-mode fiber and other special fibers. Additionally, we present a brief overview of BOTDR application scenarios in many industrial fields and intelligent perception, including structural health monitoring of large-range infrastructure, geological disaster prewarning and other applications. To conclude, we discuss several challenges and prospects in the future development of BOTDRs.
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153
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Abstract
Iontophoretic application of norepinephrine (NE) into the primary visual cortex (V1) in vivo reduces spontaneous and evoked activity, without changing the functional selectivity of cortical units. One possible consequence of this phenomenon is that adrenergic receptors (ARs) regulate the signal-to-noise ratio (SNR) of neural responses in this circuit. However, despite such strong inhibitory action of NE on neuronal firing patterns in V1, its specific action on visual behavior has not been studied. Furthermore, the majority of observations regarding cortical NE from in vivo recordings have been performed in anesthetized animals and have not been tested behaviorally. Here, we describe how micro-infusion of AR agonists/antagonists into mouse V1 influences visually-guided behavior at different contrasts and spatial frequencies. We found that cortical activation of α1- and β-AR produced a substantial reduction in visual discrimination performance at high contrasts and low spatial frequencies, consistent with a divisive effect. This reduction was reversible and was accompanied by a rise in escape latencies as well as an increase in the group averaged choice variance as a function of stimulus contrast. We conclude that pharmacological activation of cortical AR regulates visual perception and adaptive behavior through a divisive gain control of visual responses.
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Affiliation(s)
- Mario Treviño
- Laboratorio de Plasticidad Cortical y Aprendizaje Perceptual, Instituto de Neurociencias, Universidad de Guadalajara, Guadalajara, México
| | - Ricardo Medina-Coss Y León
- Laboratorio de Plasticidad Cortical y Aprendizaje Perceptual, Instituto de Neurociencias, Universidad de Guadalajara, Guadalajara, México
| | - Elí Lezama
- Laboratorio de Plasticidad Cortical y Aprendizaje Perceptual, Instituto de Neurociencias, Universidad de Guadalajara, Guadalajara, México
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154
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Cherkashin MN, Brenner C, Hofmann MR. Transducer-matched multipulse excitation for signal-to-noise ratio improvement in diode laser-based photoacoustic systems. J Biomed Opt 2019; 24:1-8. [PMID: 30968647 PMCID: PMC6990056 DOI: 10.1117/1.jbo.24.4.046001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 03/19/2019] [Indexed: 05/25/2023]
Abstract
We analyze transducer-matched multipulse excitation as a method for improving of the signal-to-noise ratio (SNR) for diode laser-based photoacoustic systems. We discuss the principle of the technique, its advantages, and potential drawbacks and perform measurements to analyze the obtainable SNR increase. We show in experiment and computationally that a lower boundary estimate of 1.2 to 1.8 fold SNR improvement can be provided using transducer-matched pulse bursts, depending on the transducer and particular arrangement. Finally, we analyze implications that the transducer resonance effects may have on the recently introduced advanced photoacoustic techniques. The findings are of immediate interest to modalities utilizing dense pulse sequences and systems possessing limited pulse energy. In particular, transducer-matched multipulse excitation may be beneficial for diode-based photoacoustic systems operated with transducers in the range of 1 to 5 MHz since the required hardware is readily available.
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Affiliation(s)
- Maxim N. Cherkashin
- Ruhr University Bochum, Photonics and Terahertz Technology, Faculty of Electrical Engineering and Information Technology, Bochum, Germany
| | - Carsten Brenner
- Ruhr University Bochum, Photonics and Terahertz Technology, Faculty of Electrical Engineering and Information Technology, Bochum, Germany
| | - Martin R. Hofmann
- Ruhr University Bochum, Photonics and Terahertz Technology, Faculty of Electrical Engineering and Information Technology, Bochum, Germany
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155
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Santosa H, Fishburn F, Zhai X, Huppert TJ. Investigation of the sensitivity-specificity of canonical- and deconvolution-based linear models in evoked functional near-infrared spectroscopy. Neurophotonics 2019; 6:025009. [PMID: 31172019 PMCID: PMC6541797 DOI: 10.1117/1.nph.6.2.025009] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 04/04/2019] [Indexed: 05/15/2023]
Abstract
Functional near-infrared spectroscopy (fNIRS) is a noninvasive brain imaging technique to measure evoked changes in cerebral blood oxygenation. In many evoked-task studies, the analysis of fNIRS experiments is based on a temporal linear regression model, which includes block-averaging, deconvolution, and canonical analysis models. The statistical parameters of this model are then spatially mapped across fNIRS measurement channels to infer brain activity. The trade-offs in sensitivity and specificity of using variations of canonical or deconvolution/block-average models are unclear. We quantitatively investigate how the choice of basis set for the regression linear model affects the sensitivity and specificity of fNIRS analysis in the presence of variability or systematic bias in underlying evoked response. For statistical parametric mapping of amplitude-based hypotheses, we conclude that these models are fairly insensitive to the parameters of the regression basis for task durations > 10 s and we report the highest sensitivity-specificity results using a low degree-of-freedom canonical model under these conditions. For shorter duration task ( < 10 s ), the signal-to-noise ratio of the data is also important in this decision and we find that deconvolution or block-averaging models outperform the canonical models at high signal-to-noise ratio but not at lower levels.
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Affiliation(s)
- Hendrik Santosa
- University of Pittsburgh, Department of Radiology, Pittsburgh, Pennsylvania, United States
| | - Frank Fishburn
- University of Pittsburgh, Department of Psychiatry, Pittsburgh, Pennsylvania, United States
| | - Xuetong Zhai
- University of Pittsburgh, Department of Bioengineering, Pittsburgh, Pennsylvania, United States
| | - Theodore J. Huppert
- University of Pittsburgh, Departments of Radiology and Bioengineering, Clinical Science Translational Institute, and Center for the Neural Basis of Cognition, Pittsburgh, Pennsylvania, United States
- Address all correspondence to Theodore J. Huppert, E-mail:
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156
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Drebitz E, Schledde B, Kreiter AK, Wegener D. Optimizing the Yield of Multi-Unit Activity by Including the Entire Spiking Activity. Front Neurosci 2019; 13:83. [PMID: 30809117 PMCID: PMC6379978 DOI: 10.3389/fnins.2019.00083] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 01/25/2019] [Indexed: 11/25/2022] Open
Abstract
Neurophysiological data acquisition using multi-electrode arrays and/or (semi-) chronic recordings frequently has to deal with low signal-to-noise ratio (SNR) of neuronal responses and potential failure of detecting evoked responses within random background fluctuations. Conventional methods to extract action potentials (spikes) from background noise often apply thresholds to the recorded signal, usually allowing reliable detection of spikes when data exhibit a good SNR, but often failing when SNR is poor. We here investigate a threshold-independent, fast, and automated procedure for analysis of low SNR data, based on fullwave-rectification and low-pass filtering the signal as a measure of the entire spiking activity (ESA). We investigate the sensitivity and reliability of the ESA-signal for detecting evoked responses by applying an automated receptive field (RF) mapping procedure to semi-chronically recorded data from primary visual cortex (V1) of five macaque monkeys. For recording sites with low SNR, the usage of ESA improved the detection rate of RFs by a factor of 2.5 in comparison to MUA-based detection. For recording sites with medium and high SNR, ESA delivered 30% more RFs than MUA. This significantly higher yield of ESA-based RF-detection still hold true when using an iterative procedure for determining the optimal spike threshold for each MUA individually. Moreover, selectivity measures for ESA-based RFs were quite compatible with MUA-based RFs. Regarding RF size, ESA delivered larger RFs than thresholded MUA, but size difference was consistent over all SNR fractions. Regarding orientation selectivity, ESA delivered more sites with significant orientation-dependent responses but with somewhat lower orientation indexes than MUA. However, preferred orientations were similar for both signal types. The results suggest that ESA is a powerful signal for applications requiring automated, fast, and reliable response detection, as e.g., brain-computer interfaces and neuroprosthetics, due to its high sensitivity and its independence from user-dependent intervention. Because the full information of the spiking activity is preserved, ESA also constitutes a valuable alternative for offline analysis of data with limited SNR.
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Affiliation(s)
- Eric Drebitz
- Brain Research Institute, Center for Cognitive Science, University of Bremen, Bremen, Germany
| | - Bastian Schledde
- Brain Research Institute, Center for Cognitive Science, University of Bremen, Bremen, Germany
| | - Andreas K Kreiter
- Brain Research Institute, Center for Cognitive Science, University of Bremen, Bremen, Germany
| | - Detlef Wegener
- Brain Research Institute, Center for Cognitive Science, University of Bremen, Bremen, Germany
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157
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Liu X, Liu S, Guo D, Sheng Y, Ke Y, An X, He F, Ming D. Enhanced Auditory Steady-State Response Using an Optimized Chirp Stimulus-Evoked Paradigm. Sensors (Basel) 2019; 19:E748. [PMID: 30759874 PMCID: PMC6387163 DOI: 10.3390/s19030748] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Revised: 02/02/2019] [Accepted: 02/09/2019] [Indexed: 12/19/2022]
Abstract
Objectives: It has been reported recently that gamma measures of the electroencephalogram (EEG) might provide information about the candidate biomarker of mental diseases like schizophrenia, Alzheimer's disease, affective disorder and so on, but as we know it is a difficult issue to induce visual and tactile evoked responses at high frequencies. Although a high-frequency response evoked by auditory senses is achievable, the quality of the recording response is not ideal, such as relatively low signal-to-noise ratio (SNR). Recently, auditory steady-state responses (ASSRs) play an essential role in the field of basic auditory studies and clinical uses. However, how to improve the quality of ASSRs is still a challenge which researchers have been working on. This study aims at designing a more comfortable and suitable evoked paradigm and then enhancing the quality of the ASSRs in healthy subjects so as to further apply it in clinical practice. Methods: Chirp and click stimuli with 40 Hz and 60 Hz were employed to evoke the gamma-ASSR respectively, and the sound adjusted to 45 dB sound pressure level (SPL). Twenty healthy subjects with normal-hearing participated, and 64-channel EEGs were simultaneously recorded during the experiment. Event-related spectral perturbation (ERSP) and SNR of the ASSRs were measured and analyzed to verify the feasibility and adaptability of the proposed evoked paradigm. Results: The results showed that the evoked paradigm proposed in this study could enhance ASSRs with strong feasibility and adaptability. 1) ASSR waves in time domain indicated that 40 Hz stimuli could significantly induce larger peak-to-peak values of ASSRs compared to 60 Hz stimuli (p < 0.01**); ERSP showed that obvious ASSRs were obtained at each lead for both 40 Hz and 60 Hz, as well as the click and chirp stimuli. 2) The SNR of the ASSRs were ⁻3.23 ± 1.68, ⁻2.44 ± 2.90, ⁻4.66 ± 2.09, and ⁻3.53 ± 3.49 respectively for 40 Hz click, 40 Hz chirp, 60 Hz click and 60 Hz chirp, indicating the chirp stimuli could induce significantly better ASSR than the click, and 40 Hz ASSRs had the higher SNR than 60 Hz (p < 0.01**). Limitation: In this study, sample size was small and the age span was not large enough. Conclusions: This study verified the feasibility and adaptability of the proposed evoked paradigm to improve the quality of the gamma-ASSR, which is significant in clinical application. The results suggested that 40 Hz ASSR evoked by chirp stimuli had the best performance and was expected to be used in clinical practice, especially in the field of mental diseases such as schizophrenia, Alzheimer's disease, and affective disorder.
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Affiliation(s)
- Xiaoya Liu
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Shuang Liu
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Dongyue Guo
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Yue Sheng
- College of Precision Instruments & Optoelectronics Engineering, Tianjin University, Tianjin 300072, China.
| | - Yufeng Ke
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Xingwei An
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Feng He
- College of Precision Instruments & Optoelectronics Engineering, Tianjin University, Tianjin 300072, China.
| | - Dong Ming
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
- College of Precision Instruments & Optoelectronics Engineering, Tianjin University, Tianjin 300072, China.
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158
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Radermacher M, Ruiz T. On cross-correlations, averages and noise in electron microscopy. Acta Crystallogr F Struct Biol Commun 2019; 75:12-18. [PMID: 30605121 PMCID: PMC6317458 DOI: 10.1107/s2053230x18014036] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 10/03/2018] [Indexed: 11/16/2022] Open
Abstract
The influence of noise on cross-correlations is revisited. Equations are provided describing the influence of noise on the cross-correlations between single images and averaged images and on those between averaged images. Biological samples are radiation-sensitive and require imaging under low-dose conditions to minimize damage. As a result, images contain a high level of noise and exhibit signal-to-noise ratios that are typically significantly smaller than 1. Averaging techniques, either implicit or explicit, are used to overcome the limitations imposed by the high level of noise. Averaging of 2D images showing the same molecule in the same orientation results in highly significant projections. A high-resolution structure can be obtained by combining the information from many single-particle images to determine a 3D structure. Similarly, averaging of multiple copies of macromolecular assembly subvolumes extracted from tomographic reconstructions can lead to a virtually noise-free high-resolution structure. Cross-correlation methods are often used in the alignment and classification steps of averaging processes for both 2D images and 3D volumes. However, the high noise level can bias alignment and certain classification results. While other approaches may be implicitly affected, sensitivity to noise is most apparent in multireference alignments, 3D reference-based projection alignments and projection-based volume alignments. Here, the influence of the image signal-to-noise ratio on the value of the cross-correlation coefficient is analyzed and a method for compensating for this effect is provided.
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Affiliation(s)
- Michael Radermacher
- Department of Molecular Physiology and Biophysics, University of Vermont, 149 Beaumont Avenue, Burlington, VT 05405, USA
| | - Teresa Ruiz
- Department of Molecular Physiology and Biophysics, University of Vermont, 149 Beaumont Avenue, Burlington, VT 05405, USA
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159
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Darras K, Kolbrek B, Knorr A, Meyer V, Zippert M, Wenzel A. Assembling cheap, high-performance microphones for recording terrestrial wildlife: the Sonitor system. F1000Res 2018; 7:1984. [PMID: 30687500 PMCID: PMC6338251 DOI: 10.12688/f1000research.17511.3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 02/11/2021] [Indexed: 11/20/2022] Open
Abstract
Passive acoustic monitoring of wildlife requires sound recording systems. Several cheap, high-performance, or open-source solutions currently exist for recording soundscapes, but all rely on commercial microphones. Commercial microphones are relatively expensive, specialized for particular taxa, and often have incomplete technical specifications. We designed Sonitor, an open-source microphone system to address all needs of ecologists that sample terrestrial wildlife acoustically. We evaluated the cost and durability of our system and measured trade-offs that are seldom acknowledged but which universally limit microphones' functions: weatherproofing versus sound attenuation, windproofing versus transmission loss after rain, signal loss in long cables, and analog sound amplification versus directivity with acoustic horns. We propose five microphone configurations suiting different budgets (from 8 to 33 EUR per unit), and fulfilling different sound quality and flexibility requirements. The Sonitor system consists of sturdy acoustic sensors that cover the entire sound frequency spectrum of sonant terrestrial wildlife at a fraction of the cost of commercial microphones.
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Affiliation(s)
- Kevin Darras
- Department of Agroecology, University of Göttingen, Göttingen, Niedersachsen, 37077, Germany
| | | | - Andreas Knorr
- Mess-, Steuerungs-, und Regeltechnik, University of Göttingen, Göttingen, Niedersachsen, 37077, Germany
| | - Volker Meyer
- Konstruktion, Geräte- Neuentwicklung, Schreinerei, Schlosserei, University of Göttingen, Göttingen, Niedersachsen, 37077, Germany
| | - Mike Zippert
- Konstruktion, Geräte- Neuentwicklung, Schreinerei, Schlosserei, University of Göttingen, Göttingen, Niedersachsen, 37077, Germany
| | - Arne Wenzel
- Functional Agrobiodiversity, University of Göttingen, Göttingen, Niedersachsen, 37077, Germany
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160
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Yeap ZX, Sim KS, Tso CP. Adaptive tuning piecewise cubic Hermite interpolation with Wiener filter in wavelet domain for scanning electron microscope images. Microsc Res Tech 2018; 82:402-414. [PMID: 30575192 DOI: 10.1002/jemt.23181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 09/03/2018] [Accepted: 10/19/2018] [Indexed: 11/10/2022]
Abstract
Image processing is introduced to remove or reduce the noise and unwanted signal that deteriorate the quality of an image. Here, a single level two-dimensional wavelet transform is applied to the image in order to obtain the wavelet transform sub-band signal of an image. An estimation technique to predict the noise variance in an image is proposed, which is then fed into a Wiener filter to filter away the noise from the sub-band of the image. The proposed filter is called adaptive tuning piecewise cubic Hermite interpolation with Wiener filter in the wavelet domain. The performance of this filter is compared with four existing filters: median filter, Gaussian smoothing filter, two level wavelet transform with Wiener filter and adaptive noise Wiener filter. Based on the results, the adaptive tuning piecewise cubic Hermite interpolation with Wiener filter in wavelet domain has better performance than the other four methods.
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161
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Gureyev TE, Kozlov A, Nesterets YI, Paganin DM, Martin AV, Quiney HM. Signal-to-noise, spatial resolution and information capacity of coherent diffraction imaging. IUCrJ 2018; 5:716-726. [PMID: 30443356 PMCID: PMC6211529 DOI: 10.1107/s2052252518010941] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 07/31/2018] [Indexed: 06/09/2023]
Abstract
It is shown that the average signal-to-noise ratio (SNR) in the three-dimensional electron-density distribution of a sample reconstructed by coherent diffractive imaging cannot exceed twice the square root of the ratio of the mean total number of scattered photons detected during the scan and the number of spatially resolved voxels in the reconstructed volume. This result leads to an upper bound on Shannon's information capacity of this imaging method by specifying the maximum number of distinguishable density distributions within the reconstructed volume when the radiation dose delivered to the sample and the spatial resolution are both fixed. If the spatially averaged SNR in the reconstructed electron density is fixed instead, the radiation dose is shown to be proportional to the third or fourth power of the spatial resolution, depending on the sampling of the three-dimensional diffraction space and the scattering power of the sample.
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Affiliation(s)
- Timur E. Gureyev
- ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, Australia
- Faculty of Health Sciences, University of Sydney, Sydney NSW 2006, Australia
- School of Science and Technology, University of New England, Armidale NSW 2351, Australia
- Manufacturing, CSIRO, Clayton, Victoria 3168, Australia
- School of Physics and Astronomy, Monash University, Clayton, Victoria 3800, Australia
| | - Alexander Kozlov
- ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Yakov I. Nesterets
- School of Science and Technology, University of New England, Armidale NSW 2351, Australia
- Manufacturing, CSIRO, Clayton, Victoria 3168, Australia
| | - David M. Paganin
- School of Physics and Astronomy, Monash University, Clayton, Victoria 3800, Australia
| | - Andrew V. Martin
- School of Science, RMIT University, Melbourne, Victoria 3001, Australia
| | - Harry M. Quiney
- ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, Australia
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162
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Guenthner C, Kozerke S. Encoding and readout strategies in magnetic resonance elastography. NMR Biomed 2018; 31:e3919. [PMID: 29806865 DOI: 10.1002/nbm.3919] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 12/15/2017] [Accepted: 02/15/2018] [Indexed: 06/08/2023]
Abstract
Magnetic resonance elastography (MRE) has evolved significantly since its inception. Advances in motion-encoding gradient design and readout strategies have led to improved encoding and signal-to-noise ratio (SNR) efficiencies, which in turn allow for higher spatial resolution, increased coverage, and/or shorter scan times. The purpose of this review is to summarize MRE wave-encoding and readout approaches in a unified mathematical framework to allow for a comparative assessment of encoding and SNR efficiency of the various methods available. Besides standard full- and fractional-wave-encoding approaches, advanced techniques including flow compensation, sample interval modulation and multi-shot encoding are considered. Signal readout using fast k-space trajectories, reduced field of view, multi-slice, and undersampling techniques are summarized and put into perspective. The review is concluded with a foray into displacement and diffusion encoding as alternative and/or complementary techniques.
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Affiliation(s)
- Christian Guenthner
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
| | - Sebastian Kozerke
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
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163
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Mitsouras D, Tao M, de Vries MR, Trocha K, Miranda OR, Vemula PK, Ding K, Imanzadeh A, Schoen FJ, Karp JM, Ozaki CK, Rybicki FJ. Early animal model evaluation of an implantable contrast agent to enhance magnetic resonance imaging of arterial bypass vein grafts. Acta Radiol 2018; 59:1074-1081. [PMID: 29378421 DOI: 10.1177/0284185117753656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Background Non-invasive monitoring of autologous vein graft (VG) bypass grafts is largely limited to detecting late luminal narrowing. Although magnetic resonance imaging (MRI) delineates vein graft intima, media, and adventitia, which may detect early failure, the scan time required to achieve sufficient resolution is at present impractical. Purpose To study VG visualization enhancement in vivo and delineate whether a covalently attached MRI contrast agent would enable quicker longitudinal imaging of the VG wall. Material and Methods Sixteen 12-week-old male C57BL/6J mice underwent carotid interposition vein grafting. The inferior vena cava of nine donor mice was treated with a gadolinium-diethylenetriaminepentaacetic acid (Gd-DTPA)-based contrast agent, with control VGs labeled with a vehicle. T1-weighted (T1W) MRI was performed serially at postoperative weeks 1, 4, 12, and 20. A portion of animals was sacrificed for histopathology following each imaging time point. Results MRI signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) were significantly higher for treated VGs in the first three time points (1.73 × higher SNR, P = 0.0006, and 5.83 × higher CNR at the first time point, P = 0.0006). However, MRI signal enhancement decreased consistently in the study period, to 1.29 × higher SNR and 2.64 × higher CNR, by the final time point. There were no apparent differences in graft morphometric analyses in Masson's trichrome-stained sections. Conclusion A MRI contrast agent that binds covalently to the VG wall provides significant increase in T1W MRI signal with no observed adverse effects in a mouse model. Further optimization of the contrast agent to enhance its durability is required.
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Affiliation(s)
- Dimitrios Mitsouras
- Applied Imaging Science Laboratory, Department of Radiology, Brigham and Women’s Hospital, Boston, MA, USA
- Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON, Canada
| | - Ming Tao
- Department of Surgery, Brigham and Women’s Hospital, Boston, MA, USA
| | - Margreet R de Vries
- Department of Surgery, Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical Center, Leiden, The Netherlands
| | - Kaspar Trocha
- Department of Surgery, Brigham and Women’s Hospital, Boston, MA, USA
| | - Oscar R Miranda
- Harvard Stem Cell Institute, Harvard University, Boston, MA, USA
- Harvard-MIT Division of Health Science and Technology, Department of Medicine, Brigham and Women’s Hospital, Boston, MA, USA
| | - Praveen Kumar Vemula
- Harvard Stem Cell Institute, Harvard University, Boston, MA, USA
- Harvard-MIT Division of Health Science and Technology, Department of Medicine, Brigham and Women’s Hospital, Boston, MA, USA
| | - Kui Ding
- Department of Surgery, Brigham and Women’s Hospital, Boston, MA, USA
| | - Amir Imanzadeh
- Applied Imaging Science Laboratory, Department of Radiology, Brigham and Women’s Hospital, Boston, MA, USA
| | | | - Jeffrey M Karp
- Harvard Stem Cell Institute, Harvard University, Boston, MA, USA
- Harvard-MIT Division of Health Science and Technology, Department of Medicine, Brigham and Women’s Hospital, Boston, MA, USA
| | - C Keith Ozaki
- Department of Surgery, Brigham and Women’s Hospital, Boston, MA, USA
| | - Frank J Rybicki
- Applied Imaging Science Laboratory, Department of Radiology, Brigham and Women’s Hospital, Boston, MA, USA
- Ottawa Hospital Research Institute and Division of Medical Imaging, The Ottawa Hospital Department of Radiology, University of Ottawa, Ottawa, ON, Canada
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164
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Abstract
A complex-valued data-based model with pth order autoregressive errors and general real/imaginary error covariance structure is proposed as an alternative to the commonly-used magnitude-only data-based autoregressive model for fMRI time series. Likelihood-ratio-test-based activation statistics are derived for both models and compared for experimental and simulated data. For a dataset from a right-hand finger-tapping experiment, the activation map obtained using complex-valued modeling more clearly identifies the primary activation region (left functional central sulcus) than the magnitude-only model. Such improved accuracy in mapping the left functional central sulcus has important implications in neurosurgical planning for tumor and epilepsy patients. Additionally, we develop magnitude and phase detrending procedures for complex-valued time series and examine the effect of spatial smoothing. These methods improve the power of complex-valued data-based activation statistics. Our results advocate for the use of the complex-valued data and the modeling of its dependence structures as a more efficient and reliable tool in fMRI experiments over the current practice of using only magnitude-valued datasets.
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165
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Abstract
Fast-acting dynamic range compression is a level-dependent amplification scheme which aims to restore audibility for hearing-impaired listeners. However, when being applied to noisy speech at positive signal-to-noise ratios (SNRs), the gain function typically changes rapidly over time as it is driven by the short-term fluctuations of the speech signal. This leads to an amplification of the noise components in the speech gaps, which reduces the output SNR and distorts the acoustic properties of the background noise. An adaptive compression scheme is proposed here which utilizes information about the SNR in different frequency channels to adaptively change the characteristics of the compressor. Specifically, fast-acting compression is applied to speech-dominated time-frequency (T-F) units where the SNR is high, while slow-acting compression is used to effectively linearize the processing for noise-dominated T-F units where the SNR is low. A systematic evaluation of this SNR-aware compression scheme showed that the effective compression of speech components embedded in noise was similar to that of a conventional fast-acting system, whereas natural fluctuations in the background noise were preserved in a similar way as when a slow-acting compressor was applied.
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Affiliation(s)
- Tobias May
- 1 Hearing Systems Group, Department of Electrical Engineering, Technical University of Denmark, Lyngby, Denmark
| | - Borys Kowalewski
- 1 Hearing Systems Group, Department of Electrical Engineering, Technical University of Denmark, Lyngby, Denmark
| | - Torsten Dau
- 1 Hearing Systems Group, Department of Electrical Engineering, Technical University of Denmark, Lyngby, Denmark
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166
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Abstract
Radiofrequency (RF) coils are an essential MRI hardware component. They directly impact the spatial and temporal resolution, sensitivity, and uniformity in MRI. Advances in RF hardware have resulted in a variety of designs optimized for specific clinical applications. RF coils are the "antennas" of the MRI system and have two functions: first, to excite the magnetization by broadcasting the RF power (Tx-Coil) and second to receive the signal from the excited spins (Rx-Coil). Transmit RF Coils emit magnetic field pulses ( B1+) to rotate the net magnetization away from its alignment with the main magnetic field (B0 ), resulting in a transverse precessing magnetization. Due to the precession around the static main magnetic field, the magnetic flux in the receive RF Coil ( B1-) changes, which generates a current I. This signal is "picked-up" by an antenna and preamplified, usually mixed down to a lower frequency, digitized, and processed by a computer to finally reconstruct an image or a spectrum. Transmit and receive functionality can be combined in one RF Coil (Tx/Rx Coils). This review looks at the fundamental principles of an MRI RF coil from the perspective of clinicians and MR technicians and summarizes the current advances and developments in technology. LEVEL OF EVIDENCE 1 Technical Efficacy: Stage 6.
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Affiliation(s)
- Bernhard Gruber
- A.A. Martinos Center for Biomedical Imaging, Harvard‐MIT Division of Health Sciences & Technology, Massachusetts General HospitalCharlestownMassachusettsUSA
- Department of Radiology, Harvard Medical SchoolMassachusetts General HospitalBostonMassachusettsUSA
- Center for Medical Physics and Biomedical EngineeringMedical University of ViennaViennaAustria
| | - Martijn Froeling
- Department of RadiologyUniversity Medical Center UtrechtUtrechtThe Netherlands
| | - Tim Leiner
- Department of RadiologyUniversity Medical Center UtrechtUtrechtThe Netherlands
| | - Dennis W.J. Klomp
- Department of RadiologyUniversity Medical Center UtrechtUtrechtThe Netherlands
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167
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Stec B, Susek W. Theory and Measurement of Signal-to-Noise Ratio in Continuous-Wave Noise Radar. Sensors (Basel) 2018; 18:E1445. [PMID: 29734772 DOI: 10.3390/s18051445] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 05/03/2018] [Accepted: 05/04/2018] [Indexed: 11/20/2022]
Abstract
Determination of the signal power-to-noise power ratio on the input and output of reception systems is essential to the estimation of their quality and signal reception capability. This issue is especially important in the case when both signal and noise have the same characteristic as Gaussian white noise. This article considers the problem of how a signal-to-noise ratio is changed as a result of signal processing in the correlation receiver of a noise radar in order to determine the ability to detect weak features in the presence of strong clutter-type interference. These studies concern both theoretical analysis and practical measurements of a noise radar with a digital correlation receiver for 9.2 GHz bandwidth. Firstly, signals participating individually in the correlation process are defined and the terms signal and interference are ascribed to them. Further studies show that it is possible to distinguish a signal and a noise on the input and output of a correlation receiver, respectively, when all the considered noises are in the form of white noise. Considering the above, a measurement system is designed in which it is possible to represent the actual conditions of noise radar operation and power measurement of a useful noise signal and interference noise signals—in particular the power of an internal leakage signal between a transmitter and a receiver of the noise radar. The proposed measurement stands and the obtained results show that it is possible to optimize with the use of the equipment and not with the complex processing of a noise signal. The radar parameters depend on its prospective application, such as short- and medium-range radar, ground-penetrating radar, and through-the-wall detection radar.
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168
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Pedersen RL, Hot D, Li Z. Comparison of an InSb Detector and Upconversion Detector for Infrared Polarization Spectroscopy. Appl Spectrosc 2018; 72:793-797. [PMID: 29278916 PMCID: PMC5944081 DOI: 10.1177/0003702817746635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Accepted: 11/14/2017] [Indexed: 06/07/2023]
Abstract
This paper compares the signal-to-noise ratio obtained using an InSb photodiode for infrared (IR) polarization spectroscopy to that obtained using an upconversion detector, and shows a factor 64 improvement by the change. Upconversion detection is based on using sum frequency generation to move the IR optical signal to near-visible wavelengths to improve the sensitivity.
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Affiliation(s)
- Rasmus L. Pedersen
- Rasmus Pedersen, Physics Department, Combustion Division Lund University, Box 118, SE-221 00 Lund, Sweden.
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169
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Yamagami M, Peters KM, Milovanovic I, Kuang I, Yang Z, Lu N, Steele KM. Assessment of Dry Epidermal Electrodes for Long-Term Electromyography Measurements. Sensors (Basel) 2018; 18:s18041269. [PMID: 29677129 PMCID: PMC5948629 DOI: 10.3390/s18041269] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 04/19/2018] [Accepted: 04/19/2018] [Indexed: 11/16/2022]
Abstract
Commercially available electrodes can only provide quality surface electromyography (sEMG) measurements for a limited duration due to user discomfort and signal degradation, but in many applications, collecting sEMG data for a full day or longer is desirable to enhance clinical care. Few studies for long-term sEMG have assessed signal quality of electrodes using clinically relevant tests. The goal of this research was to evaluate flexible, gold-based epidermal sensor system (ESS) electrodes for long-term sEMG recordings. We collected sEMG and impedance data from eight subjects from ESS and standard clinical electrodes on upper extremity muscles during maximum voluntary isometric contraction tests, dynamic range of motion tests, the Jebsen Taylor Hand Function Test, and the Box & Block Test. Four additional subjects were recruited to test the stability of ESS signals over four days. Signals from the ESS and traditional electrodes were strongly correlated across tasks. Measures of signal quality, such as signal-to-noise ratio and signal-to-motion ratio, were also similar for both electrodes. Over the four-day trial, no significant decrease in signal quality was observed in the ESS electrodes, suggesting that thin, flexible electrodes may provide a robust tool that does not inhibit movement or irritate the skin for long-term measurements of muscle activity in rehabilitation and other applications.
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Affiliation(s)
- Momona Yamagami
- Department of Electrical Engineering, University of Washington, Seattle, WA 98195, USA.
| | - Keshia M Peters
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.
| | - Ivana Milovanovic
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.
| | - Irene Kuang
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Zeyu Yang
- Chengdu Rotex Technology Company Ltd., Chengdu 610041, China.
| | - Nanshu Lu
- Department of Biomedical Engineering, Aerospace Engineering and Engineering Mechanics, University of Texas, Austin, TX 78712, USA.
| | - Katherine M Steele
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.
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170
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Falcone JD, Carroll SL, Saxena T, Mandavia D, Clark A, Yarabarla V, Bellamkonda RV. Correlation of mRNA Expression and Signal Variability in Chronic Intracortical Electrodes. Front Bioeng Biotechnol 2018; 6:26. [PMID: 29637071 PMCID: PMC5880884 DOI: 10.3389/fbioe.2018.00026] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 03/06/2018] [Indexed: 01/08/2023] Open
Abstract
Objective The goal for this research was to identify molecular mechanisms that explain animal-to-animal variability in chronic intracortical recordings. Approach Microwire electrodes were implanted into Sprague Dawley rats at an acute (1 week) and a chronic (14 weeks) time point. Weekly recordings were conducted, and action potentials were evoked in the barrel cortex by deflecting the rat’s whiskers. At 1 and 14 weeks, tissue was collected, and mRNA was extracted. mRNA expression was compared between 1 and 14 weeks using a high throughput multiplexed qRT-PCR. Pearson correlation coefficients were calculated between mRNA expression and signal-to-noise ratios at 14 weeks. Main results At 14 weeks, a positive correlation between signal-to-noise ratio (SNR) and NeuN and GFAP mRNA expression was observed, indicating a relationship between recording strength and neuronal population, as well as reactive astrocyte activity. The inflammatory state around the electrode interface was evaluated using M1-like and M2-like markers. Expression for both M1-like and M2-like mRNA markers remained steady from 1 to 14 weeks. Anti-inflammatory markers, CD206 and CD163, however, demonstrated a significant positive correlation with SNR quality at 14 weeks. VE-cadherin, a marker for adherens junctions, and PDGFR-β, a marker for pericytes, both partial representatives of blood–brain barrier health, had a positive correlation with SNR at 14 weeks. Endothelial adhesion markers revealed a significant increase in expression at 14 weeks, while CD45, a pan-leukocyte marker, significantly decreased at 14 weeks. No significant correlation was found for either the endothelial adhesion or pan-leukocyte markers. Significance A positive correlation between anti-inflammatory and blood–brain barrier health mRNA markers with electrophysiological efficacy of implanted intracortical electrodes has been demonstrated. These data reveal potential mechanisms for further evaluation to determine potential target mechanisms to improve consistency of intracortical electrodes recordings and reduce animal-to-animal/implant-to-implant variability.
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Affiliation(s)
- Jessica D Falcone
- School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, United States
| | - Sheridan L Carroll
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, United States
| | - Tarun Saxena
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, United States
| | - Dev Mandavia
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA, United States
| | - Alexus Clark
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA, United States
| | - Varun Yarabarla
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA, United States
| | - Ravi V Bellamkonda
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC, United States
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171
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Abstract
For camouflage to succeed, an individual has to pass undetected, unrecognized or untargeted, and hence it is the processing of visual information that needs to be deceived. Camouflage is therefore an adaptation to the perception and cognitive mechanisms of another animal. Although this has been acknowledged for a long time, there has been no unitary account of the link between visual perception and camouflage. Viewing camouflage as a suite of adaptations to reduce the signal-to-noise ratio provides the necessary common framework. We review the main processes in visual perception and how animal camouflage exploits these. We connect the function of established camouflage mechanisms to the analysis of primitive features, edges, surfaces, characteristic features and objects (a standard hierarchy of processing in vision science). Compared to the commonly used research approach based on established camouflage mechanisms, we argue that our approach based on perceptual processes targeted by camouflage has several important benefits: specifically, it enables the formulation of more precise hypotheses and addresses questions that cannot even be identified when investigating camouflage only through the classic approach based on the patterns themselves. It also promotes a shift from the appearance to the mechanistic function of animal coloration.This article is part of the themed issue 'Animal coloration: production, perception, function and application'.
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Affiliation(s)
- Sami Merilaita
- Department of Biosciences, Åbo Akademi University, Tykistökatu 6, 20520 Turku, Finland
| | - Nicholas E Scott-Samuel
- Department of Experimental Psychology, University of Bristol, 12A Priory Road, Bristol BS8 1TN, UK
| | - Innes C Cuthill
- School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol BS8 1TQ, UK
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172
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Kim SJ, Koh HJ, Ren CE, Kwon O, Maleski K, Cho SY, Anasori B, Kim CK, Choi YK, Kim J, Gogotsi Y, Jung HT. Metallic Ti 3C 2T x MXene Gas Sensors with Ultrahigh Signal-to-Noise Ratio. ACS Nano 2018; 12:986-993. [PMID: 29368519 DOI: 10.1021/acsnano.7b07460] [Citation(s) in RCA: 453] [Impact Index Per Article: 75.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Achieving high sensitivity in solid-state gas sensors can allow the precise detection of chemical agents. In particular, detection of volatile organic compounds (VOCs) at the parts per billion (ppb) level is critical for the early diagnosis of diseases. To obtain high sensitivity, two requirements need to be simultaneously satisfied: (i) low electrical noise and (ii) strong signal, which existing sensor materials cannot meet. Here, we demonstrate that 2D metal carbide MXenes, which possess high metallic conductivity for low noise and a fully functionalized surface for a strong signal, greatly outperform the sensitivity of conventional semiconductor channel materials. Ti3C2Tx MXene gas sensors exhibited a very low limit of detection of 50-100 ppb for VOC gases at room temperature. Also, the extremely low noise led to a signal-to-noise ratio 2 orders of magnitude higher than that of other 2D materials, surpassing the best sensors known. Our results provide insight in utilizing highly functionalized metallic sensing channels for developing highly sensitive sensors.
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Affiliation(s)
| | | | - Chang E Ren
- A.J. Drexel Nanomaterials Institute, Drexel University , Philadelphia, Pennsylvania 19104, United States
| | | | - Kathleen Maleski
- A.J. Drexel Nanomaterials Institute, Drexel University , Philadelphia, Pennsylvania 19104, United States
| | | | - Babak Anasori
- A.J. Drexel Nanomaterials Institute, Drexel University , Philadelphia, Pennsylvania 19104, United States
| | | | | | | | - Yury Gogotsi
- A.J. Drexel Nanomaterials Institute, Drexel University , Philadelphia, Pennsylvania 19104, United States
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173
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Abstract
Modern digital microscopy combines the equipment of classical light microscopy with a computerized imaging system. The technique comprises image formation by optics, image registration by a camera, and saving of image data in a computer file. This chapter describes limitations that are particular to each of these processes, including optical resolution, efficiency of image registration, characteristics of image file formats, and data management. Further suggestions are given which serve, in turn, to help construct a set of guidelines aimed at optimization of digital microscopic imaging. © 2018 by John Wiley & Sons, Inc.
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Affiliation(s)
- Callen T Wallace
- University of Pittsburgh-Center for Biologic Imaging, Pittsburgh, Pennsylvania
| | - Morgan Jessup
- University of Pittsburgh-Center for Biologic Imaging, Pittsburgh, Pennsylvania
| | | | - Karina A Peña
- University of Pittsburgh-Center for Biologic Imaging, Pittsburgh, Pennsylvania
| | - Michael J Calderon
- University of Pittsburgh-Center for Biologic Imaging, Pittsburgh, Pennsylvania
| | - Patricia A Loughran
- University of Pittsburgh-Center for Biologic Imaging, Pittsburgh, Pennsylvania
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174
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Wiedorn MO, Awel S, Morgan AJ, Barthelmess M, Bean R, Beyerlein KR, Chavas LMG, Eckerskorn N, Fleckenstein H, Heymann M, Horke DA, Knoška J, Mariani V, Oberthür D, Roth N, Yefanov O, Barty A, Bajt S, Küpper J, Rode AV, Kirian RA, Chapman HN. Post-sample aperture for low background diffraction experiments at X-ray free-electron lasers. J Synchrotron Radiat 2017; 24:1296-1298. [PMID: 29091073 PMCID: PMC5665296 DOI: 10.1107/s1600577517011961] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2017] [Accepted: 08/18/2017] [Indexed: 06/07/2023]
Abstract
The success of diffraction experiments from weakly scattering samples strongly depends on achieving an optimal signal-to-noise ratio. This is particularly important in single-particle imaging experiments where diffraction signals are typically very weak and the experiments are often accompanied by significant background scattering. A simple way to tremendously reduce background scattering by placing an aperture downstream of the sample has been developed and its application in a single-particle X-ray imaging experiment at FLASH is demonstrated. Using the concept of a post-sample aperture it was possible to reduce the background scattering levels by two orders of magnitude.
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Affiliation(s)
- Max O. Wiedorn
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Salah Awel
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Andrew J. Morgan
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Miriam Barthelmess
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Richard Bean
- European XFEL GmbH, Albert-Einstein-Ring 19, D-22671 Hamburg, Germany
| | - Kenneth R. Beyerlein
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Leonard M. G. Chavas
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Niko Eckerskorn
- Laser Physics Centre, Research School of Physics and Engineering, Australian National University, ACT 2601, Canberra, Australia
| | - Holger Fleckenstein
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Michael Heymann
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Daniel A. Horke
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Juraj Knoška
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Valerio Mariani
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Dominik Oberthür
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Nils Roth
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Oleksandr Yefanov
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Anton Barty
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Saša Bajt
- Photon Science, DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Jochen Küpper
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Andrei V. Rode
- Laser Physics Centre, Research School of Physics and Engineering, Australian National University, ACT 2601, Canberra, Australia
| | | | - Henry N. Chapman
- Center for Free-Electron Laser Scienece, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
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175
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Chilcott AK, Bradley KM, McGowan DR. Effect of a Bayesian Penalized Likelihood PET Reconstruction Compared With Ordered Subset Expectation Maximization on Clinical Image Quality Over a Wide Range of Patient Weights. AJR Am J Roentgenol 2018; 210:153-7. [PMID: 29091008 DOI: 10.2214/AJR.17.18060] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
OBJECTIVE A study was performed to compare background liver signal-to-noise ratio (SNR) and visually assessed image quality of clinical PET/CT studies from the same PET acquisition data reconstructed by Bayesian penalized likelihood (BPL) and ordered subset expectation maximization (OSEM) over a range of patient weights. MATERIALS AND METHODS The effect of a BPL PET reconstruction algorithm on liver SNR and visually assessed image quality over a range of patient weights (41-196 kg; n = 108) was retrospectively compared with standard-of-care OSEM reconstruction on the same PET acquisition data after IV administration of 18F-FDG (4 MBq/kg). RESULTS BPL showed no significant change (p > 0.05) in liver SNR with increasing weight and body mass index (BMI), whereas OSEM showed increasing noise with increasing weight and BMI. The liver SNR was significantly higher using BPL than a standard OSEM reconstruction (p < 0.0002 for all BMI groups). Visually assessed image quality declined at a greater rate with increasing weight and BMI in the OSEM images than with BPL images. CONCLUSION BPL provides a more consistent visually assessed image quality and liver background SNR than does OSEM, with the greatest benefit for the heaviest patients.
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176
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Tseng YH, Chen YH, Lu CW. Adaptive Integration of the Compressed Algorithm of CS and NPC for the ECG Signal Compressed Algorithm in VLSI Implementation. Sensors (Basel) 2017; 17:s17102288. [PMID: 28991216 PMCID: PMC5677428 DOI: 10.3390/s17102288] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 09/28/2017] [Accepted: 10/04/2017] [Indexed: 06/07/2023]
Abstract
Compressed sensing (CS) is a promising approach to the compression and reconstruction of electrocardiogram (ECG) signals. It has been shown that following reconstruction, most of the changes between the original and reconstructed signals are distributed in the Q, R, and S waves (QRS) region. Furthermore, any increase in the compression ratio tends to increase the magnitude of the change. This paper presents a novel approach integrating the near-precise compressed (NPC) and CS algorithms. The simulation results presented notable improvements in signal-to-noise ratio (SNR) and compression ratio (CR). The efficacy of this approach was verified by fabricating a highly efficient low-cost chip using the Taiwan Semiconductor Manufacturing Company's (TSMC) 0.18-μm Complementary Metal-Oxide-Semiconductor (CMOS) technology. The proposed core has an operating frequency of 60 MHz and gate counts of 2.69 K.
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Affiliation(s)
- Yun-Hua Tseng
- Department of Engineering and System Science, National Tsing Hua University, Hsinchu 300, Taiwan.
- Department of Electronic Engineering, Chang Gung University, Taoyuan 333, Taiwan.
| | - Yuan-Ho Chen
- Department of Electronic Engineering, Chang Gung University, Taoyuan 333, Taiwan.
- Department of Radiation Oncology, Chang Gung Memorial Hospital-Linkou, Taoyuan 333, Taiwan.
| | - Chih-Wen Lu
- Department of Engineering and System Science, National Tsing Hua University, Hsinchu 300, Taiwan.
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177
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Zhang S, Yin T, Liu Z. [Research on coded excitation processing method for magneto-acoustic signal]. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi 2017; 34:653-659. [PMID: 29761949 DOI: 10.7507/1001-5515.201702042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Detecting and imaging method of biological electrical characteristics based on magneto-acoustic coupling effect gives valuable information of tissue in early tumor diagnosis and bioelectrical current monitoring. Normal exciting and receiving method is to use single pulse. In this method the signal to noise ratio (SNR) is limited, so the imaging quality and imaging speed are low. In this study, we propose a processing method based on coded excitation to improve SNR and shorten the processing time. The processing method using 13 bit Barker coded excitation and 16 bit Golay code excitation are studied by simulation and experiments. The results show that SNR of magneto-acoustic signal is improved by 20.96 dB and 20.62 dB by using 13 bit Barker coded and 16 bit Golay coded excitation, respectively. It also indicates the processing time is short compare to single pulse mode. In the case of the SNR increasing, the overall acquiring and processing time under 13 bit Barker coded excitation and the 16 bit Golay coded excitation is shortened to 3.62% and 4.73%, respectively, compared to the single pulse excitation with waveform averaging method. In conclusion, the coded excitation will be significant for the improvement of magneto-acoustic signal SNR and imaging quality.
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Affiliation(s)
- Shunqi Zhang
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300192, P.R.China
| | - Tao Yin
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300192, P.R.China
| | - Zhipeng Liu
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300192,
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178
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van Kalleveen IML, Hoogendam JP, Raaijmakers AJE, Visser F, Arteaga de Castro CS, Verheijen RHM, Luijten PR, Zweemer RP, Veldhuis WB, Klomp DWJ. Boosting the SNR by adding a receive-only endorectal monopole to an external antenna array for high-resolution, T 2 -weighted imaging of early-stage cervical cancer with 7-T MRI. NMR Biomed 2017; 30:e3750. [PMID: 28574604 DOI: 10.1002/nbm.3750] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Revised: 04/18/2017] [Accepted: 04/19/2017] [Indexed: 06/07/2023]
Abstract
The aim of this study was to investigate the signal-to-noise ratio (SNR) gain in early-stage cervical cancer at ultrahigh-field MRI (e.g. 7 T) using a combination of multiple external antennas and a single endorectal antenna. In particular, we used an endorectal monopole antenna to increase the SNR in cervical magnetic resonance imaging (MRI). This should allow high-resolution, T2 -weighted imaging and magnetic resonance spectroscopy (MRS) for metabolic staging, which could facilitate the local tumor status assessment. In a prospective feasibility study, five healthy female volunteers and six patients with histologically proven stage IB1-IIB cervical cancer were scanned at 7 T. We used seven external fractionated dipole antennas for transmit-receive (transceive) and an endorectally placed monopole antenna for reception only. A region of interest, containing both normal cervix and tumor tissue, was selected for the SNR measurement. Separated signal and noise measurements were obtained in the region of the cervix for each element and in the near field of the monopole antenna (radius < 30 mm) to calculate the SNR gain of the endorectal antenna in each patient. We obtained high-resolution, T2 -weighted images with a voxel size of 0.7 × 0.8 × 3.0 mm3 . In four cases with optimal placement of the endorectal antenna (verified on the T2 -weighted images), a mean gain of 2.2 in SNR was obtained at the overall cervix and tumor tissue area. Within a radius of 30 mm from the monopole antenna, a mean SNR gain of 3.7 was achieved in the four optimal cases. Overlap between the two different regions of the SNR calculations was around 24%. We have demonstrated that the use of an endorectal monopole antenna substantially increases the SNR of 7-T MRI at the cervical anatomy. Combined with the intrinsically high SNR of ultrahigh-field MRI, this gain may be employed to obtain metabolic information using MRS and to enhance spatial resolutions to assess tumor invasion.
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Affiliation(s)
| | - J P Hoogendam
- Department of Gynaecological Oncology, UMC Utrecht Cancer Centre, the Netherlands
| | | | - F Visser
- Department of Radiology, UMC Utrecht, the Netherlands
| | | | - R H M Verheijen
- Department of Gynaecological Oncology, UMC Utrecht Cancer Centre, the Netherlands
| | - P R Luijten
- Department of Radiology, UMC Utrecht, the Netherlands
| | - R P Zweemer
- Department of Gynaecological Oncology, UMC Utrecht Cancer Centre, the Netherlands
| | - W B Veldhuis
- Department of Radiology, UMC Utrecht, the Netherlands
| | - D W J Klomp
- Department of Radiology, UMC Utrecht, the Netherlands
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179
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Qin Z, Chen H, Chang J. Signal-to-Noise Ratio Enhancement Based on Empirical Mode Decomposition in Phase-Sensitive Optical Time Domain Reflectometry Systems. Sensors (Basel) 2017; 17:E1870. [PMID: 28805725 DOI: 10.3390/s17081870] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 08/11/2017] [Accepted: 08/12/2017] [Indexed: 11/16/2022]
Abstract
We propose a novel denoising method based on empirical mode decomposition (EMD) to improve the signal-to-noise ratio (SNR) for vibration sensing in phase-sensitive optical time domain reflectometry (φ-OTDR) systems. Raw Rayleigh backscattering traces are decomposed into a series of intrinsic mode functions (IMFs) and a residual component using an EMD algorithm. High frequency noise is eliminated by removing several IMFs at the position without vibration selected by the Pearson correlation coefficient (PCC). When the pulse width is 50 ns, the SNR of location information for the vibration events of 100 Hz and 1.2 kHz is increased to as high as 42.52 dB and 39.58 dB, respectively, with a 2 km sensing fiber, which demonstrates the excellent performance of this new method.
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180
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Singh V, Pfeuffer J, Zhao T, Ress D. Evaluation of spiral acquisition variants for functional imaging of human superior colliculus at 3T field strength. Magn Reson Med 2017; 79:1931-1940. [PMID: 28736924 DOI: 10.1002/mrm.26845] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2017] [Revised: 06/26/2017] [Accepted: 06/27/2017] [Indexed: 11/09/2022]
Abstract
PURPOSE High-resolution functional magnetic resonance imaging of human subcortical brain structures is challenging because of their deep location in the cranium, and their comparatively weak blood oxygen level dependent responses to strong stimuli. Magnetic resonance imaging data for subcortical brain regions exhibit both low signal-to-noise ratio and low functional contrast-to-noise ratio. To overcome these challenges, this work evaluates the use of dual-echo spiral variants that combine outward and inward trajectories. Specifically, in-in, in-out, and out-out combinations are evaluated. For completeness, single-echo spiral-in and parallel-receive-accelerated echo-planar-imaging sequences are also evaluated. METHODS Sequence evaluation was based on comparison of functional contrast-to-noise ratio within retinotopically predefined regions of interest. Superior colliculus was chosen as sample subcortical brain region because it exhibits a strong visual response. All sequences were compared relative to a single-echo spiral-out trajectory to establish a within-session reference. RESULTS In superior colliculus, the dual-echo out-out outperformed the reference trajectory by 55% in contrast-to-noise ratio, while all other trajectories had performance similar to the reference. The sequences were also compared in early visual cortex. Here, both dual-echo spiral out-out and in-out outperformed the reference by ∼25%. CONCLUSION Dual-echo spiral variants offer improved contrast-to-noise ratio performance for high-resolution imaging for both superior colliculus and cortex. Magn Reson Med 79:1931-1940, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Vimal Singh
- Electrical and Computer Engineering Department, The University of Texas at Austin, Austin, Texas, USA
| | - Josef Pfeuffer
- Siemens Healthcare, Application Development, Erlangen, Germany
| | - Tiejun Zhao
- Siemens Healthcare, MR Research Collaborations, Pittsburgh, Pennsylvania, USA
| | - David Ress
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas, USA
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181
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Zhao J, Wang Y, Yu J, Guo W, Zhang S, Aliabadi S. Short-lag Spatial Coherence Ultrasound Imaging with Adaptive Synthetic Transmit Aperture Focusing. Ultrason Imaging 2017; 39:224-239. [PMID: 28068874 DOI: 10.1177/0161734616688328] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The short-lag spatial coherence (SLSC) imaging has been demonstrated to be advantageous over the traditional B-mode ultrasound imaging. With focused scanning beams, the SLSC imaging has an excellent performance in clutter reduction and lesion detection, especially in the low signal-to-noise ratio (SNR) scenarios. The synthetic aperture (SA) imaging is an appropriate mode for the SLSC imaging as the dynamic transmit focusing could keep a good focusing quality at any depth. However, the SLSC image may still suffer a bad resolution performance when a low lag value is used in the coherence summation to ensure the contrast enhancement. In this paper, an adaptive synthetic transmit (Tx) aperture focusing strategy is proposed for the SLSC imaging with the SA mode. Based on the achievements of adaptive beamforming, a minimum variance beamformer is applied in the Tx aperture to realize adaptive focusing. Spatial coherence is then measured in the receive aperture to form the SLSC image. Simulation and experimental studies were conducted to evaluate the proposed method. Experiments showed that the proposed method not only improved the poor resolution of the original SLSC image but also enhanced the speckle performance, which led to increased contrast-to-noise ratio and speckle SNR values.
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Affiliation(s)
- Jinxin Zhao
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
| | - Yuanyuan Wang
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
- 2 Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention of Shanghai, Shanghai, China
| | - Jinhua Yu
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
- 2 Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention of Shanghai, Shanghai, China
| | - Wei Guo
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
| | - Shun Zhang
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
| | - Saeid Aliabadi
- 1 Department of Electronic Engineering, Fudan University, Shanghai, China
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182
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Qin Z, Chen H, Chang J. Detection Performance Improvement of Distributed Vibration Sensor Based on Curvelet Denoising Method. Sensors (Basel) 2017; 17:E1380. [PMID: 28613241 DOI: 10.3390/s17061380] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 06/11/2017] [Accepted: 06/12/2017] [Indexed: 11/23/2022]
Abstract
A curvelet denoising method has been proposed to reduce the time domain noise to improve the detection performance in the distributed fiber vibration sensing system based on phase-sensitive optical time domain reflectometry. The raw Rayleigh backscattering traces are regarded as a gray image and the random noise can be eliminated by the curvelet transform; hence, the amplitude difference induced by the external vibration can be extracted. The detection of a vibration event with 10 m spatial resolution along a 4 km single mode fiber is demonstrated. The signal-to-noise ratio (SNR) of location information for 50 Hz and 1 kHz vibration based on this new method increases to as high as 7.8 dB and 8.0 dB, respectively, compared to the conventional method, showing the remarkable denoising capability of this new approach.
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183
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Xia H, Yang K, Ma Y, Wang Y, Liu Y. A Noise Removal Method for Uniform Circular Arrays in Complex Underwater Noise Environments with Low SNR. Sensors (Basel) 2017; 17:s17061345. [PMID: 28598386 PMCID: PMC5492647 DOI: 10.3390/s17061345] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 06/06/2017] [Accepted: 06/06/2017] [Indexed: 11/23/2022]
Abstract
Generally, many beamforming methods are derived under the assumption of white noise. In practice, the actual underwater ambient noise is complex. As a result, the noise removal capacity of the beamforming method may be deteriorated considerably. Furthermore, in underwater environment with extremely low signal-to-noise ratio (SNR), the performances of the beamforming method may be deteriorated. To tackle these problems, a noise removal method for uniform circular array (UCA) is proposed to remove the received noise and improve the SNR in complex noise environments with low SNR. First, the symmetrical noise sources are defined and the spatial correlation of the symmetrical noise sources is calculated. Then, based on the preceding results, the noise covariance matrix is decomposed into symmetrical and asymmetrical components. Analysis indicates that the symmetrical component only affect the real part of the noise covariance matrix. Consequently, the delay-and-sum (DAS) beamforming is performed by using the imaginary part of the covariance matrix to remove the symmetrical component. However, the noise removal method causes two problems. First, the proposed method produces a false target. Second, the proposed method would seriously suppress the signal when it is located in some directions. To solve the first problem, two methods to reconstruct the signal covariance matrix are presented: based on the estimation of signal variance and based on the constrained optimization algorithm. To solve the second problem, we can design the array configuration and select the suitable working frequency. Theoretical analysis and experimental results are included to demonstrate that the proposed methods are particularly effective in complex noise environments with low SNR. The proposed method can be extended to any array.
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Affiliation(s)
- Huijun Xia
- School of Marine Science and Technology, Northwestern Polytechnical University, Xi'an 710072, China.
- Key Laboratory of Ocean Acoustics and Sensing, Ministry of Industry and Information Technology, Xi'an 710072, China.
| | - Kunde Yang
- School of Marine Science and Technology, Northwestern Polytechnical University, Xi'an 710072, China.
- Key Laboratory of Ocean Acoustics and Sensing, Ministry of Industry and Information Technology, Xi'an 710072, China.
| | - Yuanliang Ma
- School of Marine Science and Technology, Northwestern Polytechnical University, Xi'an 710072, China.
- Key Laboratory of Ocean Acoustics and Sensing, Ministry of Industry and Information Technology, Xi'an 710072, China.
| | - Yong Wang
- School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an 710072, China.
| | - Yaxiong Liu
- School of Marine Science and Technology, Northwestern Polytechnical University, Xi'an 710072, China.
- Key Laboratory of Ocean Acoustics and Sensing, Ministry of Industry and Information Technology, Xi'an 710072, China.
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184
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Monsalve P, Triolo G, Toft-Nielsen J, Bohorquez J, Henderson AD, Delgado R, Miskiel E, Ozdamar O, Feuer WJ, Porciatti V. Next Generation PERG Method: Expanding the Response Dynamic Range and Capturing Response Adaptation. Transl Vis Sci Technol 2017; 6:5. [PMID: 28553559 PMCID: PMC5444497 DOI: 10.1167/tvst.6.3.5] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Accepted: 03/27/2017] [Indexed: 11/25/2022] Open
Abstract
Purpose To compare a new method for steady-state pattern electroretinogram (PERGx) with a validated method (PERGLA) in normal controls and in patients with optic neuropathy. Methods PERGx and PERGLA were recorded in a mixed population (n = 33, 66 eyes) of younger controls (C1; n = 10, age 38 ± 8.3 years), older controls (C2; n = 11, 57.9 ± 8.09 years), patients with early manifest glaucoma (G; n = 7, 65.7 ±11.6 years), and patients with nonarteritic ischemic optic neuropathy (N; n = 5, mean age 59.4 ± 8.6 years). The PERGx stimulus was a black-white horizontal grating generated on a 14 × 14 cm LED display (1.6 cycles/deg, 15.63 reversals/s, 98% contrast, 800 cd/m2 mean luminance, 25° field). PERGx signal and noise were averaged over 1024 epochs (∼2 minutes) and Fourier analyzed to retrieve amplitude and phase. Partial averages (16 successive samples of 64 epochs each) were also analyzed to quantify progressive changes over recording time (adaptation). Results PERGLA and PERGx amplitudes and latencies were correlated (Amplitude R2 = 0.59, Latency R2 = 0.39, both P < 0.0001) and were similarly altered in disease. Compared to PERGLA, however, PERGx had shorter (16 ms) latency, higher (1.39×) amplitude, lower (0.37×) noise, and higher (4.2×) signal-to-noise ratio. PERGx displayed marked amplitude adaptation in C1 and C2 groups and no significant adaptation in G and N groups. Conclusions The PERGx high signal-to-noise ratio may allow meaningful recording in advanced stages of optic nerve disorders. In addition, it quantifies response adaptation, which may be selectively altered in glaucoma and optic neuropathy. Translational Relevance A new PERG method with increased dynamic range allows recording of retinal ganglion cell function in advanced stages of optic nerve disorders. It also quantifies the response decline during the test, an autoregulatory adaptation to metabolic challenge that decreases with age and presence of disease.
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Affiliation(s)
- Pedro Monsalve
- Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Giacinto Triolo
- Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | | | - Jorge Bohorquez
- Department of Biomedical Engineering, University of Miami, Miami, FL, USA
| | | | | | | | - Ozcan Ozdamar
- Department of Biomedical Engineering, University of Miami, Miami, FL, USA
| | - William J Feuer
- Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Vittorio Porciatti
- Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USA
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185
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Jia X, Ouyang Q, Zhang X. An Improved Design of the Spiral-Coil EMAT for Enhancing the Signal Amplitude. Sensors (Basel) 2017; 17:s17051106. [PMID: 28498307 PMCID: PMC5470782 DOI: 10.3390/s17051106] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2017] [Revised: 04/20/2017] [Accepted: 04/22/2017] [Indexed: 11/16/2022]
Abstract
The low energy transition efficiency of electromagnetic ultrasonic transducer (EMAT) is a common problem in practical application. For the purpose of enhancing the amplitude of the received signal, an improved double-coil bulk wave EMAT is proposed for the thickness measurement of metallic block. This new configuration of magnets consists of a solid cylindrical magnet and a ring-shaped magnet encircling the outer side of the solid cylindrical one. A double-coil was applied instead of a single spiral-coil. Numerical simulations were performed to analyze and optimize the proposed configuration of the EMAT by the 2-D axisymmetric finite element model (FEM). The experiment effectively verifies the rationality of the new configuration and the feasibility of improving the signal strength.
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Affiliation(s)
- Xiaojuan Jia
- Institute of Smart Engineering, School of Automation, Chongqing University, Chongqing 400044, China.
| | - Qi Ouyang
- Institute of Smart Engineering, School of Automation, Chongqing University, Chongqing 400044, China.
| | - Xinglan Zhang
- Institute of Smart Engineering, School of Automation, Chongqing University, Chongqing 400044, China.
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186
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Abstract
As the single molecule detection tool, solid-state nanopores are being applied in more and more fields, such as medicine controlled delivery, ion conductance microscopes, nanosensors, and DNA sequencing. The critical information obtained from nanopores is the signal collected, which is the ionic block current caused by the molecules passing through the pores. However, the information collected is, in part, impeded by the relatively low signal-to-noise ratio of the current solid-state nanopore measurements. Here, we report that using a salt gradient across the nanopore could improve the signal-to-noise ratio when molecules translocate through Si3N4 nanopore. Furthermore, we demonstrate that the improved signal-to-noise ratio is connected with not only the value of surface charge but also that of a salt gradient between cis and trans sides of the nanopore.
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Affiliation(s)
- Jingjie Sha
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
| | - Hongjiao Shi
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
| | - Yin Zhang
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
| | - Chen Chen
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
| | - Lei Liu
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
| | - Yunfei Chen
- Jiangsu Key Laboratory for
Design and Manufacture of Micro-Nano Biomedical Instruments, School
of Mechanical Engineering, Southeast University, Nanjing 210096, China
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187
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Beck MJ, Parker DL, Bolster BD, Kim SE, McNally JS, Treiman GS, Hadley JR. Interchangeable neck shape-specific coils for a clinically realizable anterior neck phased array system. Magn Reson Med 2017; 78:2460-2468. [PMID: 28185303 DOI: 10.1002/mrm.26632] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Revised: 12/22/2016] [Accepted: 01/11/2017] [Indexed: 11/08/2022]
Abstract
PURPOSE To demonstrate the interchangeable neck shape-specific (NSS) coil concept that supplements standard commercial spine and head/neck coils to provide simultaneous high-resolution (hi-res) head/neck imaging with high signal-to-noise ratio (SNR). METHODS Two NSS coils were constructed on formers designed to fit two different neck shapes. A 7-channel (7ch) ladder array was constructed on a medium neck former, and a 9-channel (9ch) ladder array was constructed on large neck former. Both coils were interchangeable with the same preamp housing. RESULTS The 7ch and 9ch coils demonstrate SNR gains of approximately 4 times and 3 times over the Siemens 20-channel head/neck coil in the carotid arteries of our volunteers, respectively. Coupling between the Siemens 32-channel spine coil, Siemens 20-channel head/neck coil, and the NSS coils was negligible, allowing for simultaneous hi-res head/neck imaging with high SNR. CONCLUSIONS This study demonstrates that supplementing existing commercial spine and head/neck coils with an NSS coil allows uniform simultaneous hi-res imaging with high SNR in the anterior neck, while maintaining SNR of the commercial coil in the head and posterior neck. Magn Reson Med 78:2460-2468, 2017. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Michael J Beck
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA
| | - Dennis L Parker
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA
| | | | - Seong-Eun Kim
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA
| | - J Scott McNally
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA
| | - Gerald S Treiman
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA.,Department of Surgery, University of Utah, Salt Lake City, Utah, USA.,Veterans Affairs Department of Surgery (VASLCHCS), Salt Lake City, Utah, USA
| | - J Rock Hadley
- Utah Center for Advanced Imaging Research, Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah, USA
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188
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Abstract
Quasi-static ultrasound elastography is an emerging diagnostic imaging modality for determining the stiffness of pathologically changed soft tissues, which do not show significant differences in acoustic impedance for B-mode imaging. Although some methods were applied to improve the signal-to-noise ratio (SNRe) and contrast-to-noise ratio (CNRe) of the constructed elastogram, nonuniform strain distribution at the internal boundary of a hard inclusion, even with the uniform displacement on the surface, is an inherent mechanical effect and results in distortion at the detected lesion boundary. To overcome such stress concentrations, a new elastographic modality was proposed, where the elastograms from different angles throughout 360° were compounded. The strain field and subsequent ultrasound images were calculated using the finite element method (FEM) and Field II, respectively, from which the elastograms were constructed. The performance of complete angular compound elastography with varied interval angles, lesion sizes, and ratios of Young's moduli of the lesion to the background was simulated and compared with that of conventional axial strain elastography. It is found that viewing the lesion from only about 10 angles (interval of 36°) would significantly improve the image quality of elastogram (increasing SNRe by at least 13% and CNRe by at least 5.8 dB), reduce the lesion distortion in the lateral direction, and enhance the sensitivity, resolution, and accuracy of lesion detection. A preliminary phantom study showed similar improvements. Altogether, complete angular compound elastography improves the elastogram quality and reduces the mechanical effects in lesion detection.
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Affiliation(s)
- Chenhui Liu
- 1 School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
| | - Yufeng Zhou
- 1 School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
- 2 Key Laboratory of Modern Acoustics, Nanjing University, Nanjing, China
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189
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Weiss J, Cabalín LM, Laserna JJ. Angle of Observation Influence on Emission Signal from Spatially Confined Laser-Induced Plasmas. Appl Spectrosc 2017; 71:87-96. [PMID: 27852873 DOI: 10.1177/0003702816666285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The present work focuses on the influence of the angle of observation on the emission signal from copper plasmas. Plasma plumes have been generated inside a home-made chamber consisting of two parallel glass windows spaced by 2.5 mm. This chamber allows observing plasma plumes from different collection angles throughout their perimeter, spanning from 20° to 80° with respect to the surface of the Cu target. In order to minimize the observed volume of the plasma, measurements were made from the closest distance possible through a metallic hollow tube. Single-pulse and collinear double-pulse excitation schemes with a Nd:YAG laser (1064 nm, 5 ns) have been investigated. The results have shown that the selection of the best angle to collect light from the plasma is related to the excitation mode. On the other hand, the shot-to-shot signal variability has been found to depend on the shape of plasma plumes. In single-pulse excitation, a good correlation between the observed laser-induced breakdown spectroscopy (LIBS) emission (from spatially confined plumes) and their integrated signal of plasma image has been ascertained. However, this fact was less evident in double-pulse LIBS, which could be due to a different mechanism involved in the ablation process.
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Affiliation(s)
- Jiri Weiss
- 1 Institute of Physical Engineering, Faculty of Mechanical Engineering, Brno University of Technology, Brno, Czech Republic
| | - Luisa Maria Cabalín
- 2 Departamento de Química Analítica, Facultad de Ciencias, Universidad de Málaga, Málaga, España
| | - J Javier Laserna
- 2 Departamento de Química Analítica, Facultad de Ciencias, Universidad de Málaga, Málaga, España
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190
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Khadka G, Hwang SS. Tag-to-Tag Interference Suppression Technique Based on Time Division for RFID. Sensors (Basel) 2017; 17:s17010078. [PMID: 28045440 PMCID: PMC5298651 DOI: 10.3390/s17010078] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 11/25/2016] [Indexed: 06/06/2023]
Abstract
Radio-frequency identification (RFID) is a tracking technology that enables immediate automatic object identification and rapid data sharing for a wide variety of modern applications using radio waves for data transmission from a tag to a reader. RFID is already well established in technical areas, and many companies have developed corresponding standards and measurement techniques. In the construction industry, effective monitoring of materials and equipment is an important task, and RFID helps to improve monitoring and controlling capabilities, in addition to enabling automation for construction projects. However, on construction sites, there are many tagged objects and multiple RFID tags that may interfere with each other's communications. This reduces the reliability and efficiency of the RFID system. In this paper, we propose an anti-collision algorithm for communication between multiple tags and a reader. In order to suppress interference signals from multiple neighboring tags, the proposed algorithm employs the time-division (TD) technique, where tags in the interrogation zone are assigned a specific time slot so that at every instance in time, a reader communicates with tags using the specific time slot. We present representative computer simulation examples to illustrate the performance of the proposed anti-collision technique for multiple RFID tags.
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Affiliation(s)
- Grishma Khadka
- Department of Advanced Parts and Material Engineering, Chosun University, Gwangju 501-759, Korea.
| | - Suk-Seung Hwang
- Department of Electronic Engineering, Chosun University, Gwangju 501-759, Korea.
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191
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Zhang BT, Li M, Yu LL, Dai YM, Yu SN, Jiang JL. Diffusion tensor imaging of spinal microstructure in healthy adults: improved resolution with the readout segmentation of long variable echo-trains. Neural Regen Res 2017; 12:2067-2070. [PMID: 29323047 PMCID: PMC5784356 DOI: 10.4103/1673-5374.221166] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
Diffusion tensor imaging plays an important role in the accurate diagnosis and prognosis of spinal cord diseases. However, because of technical limitations, the imaging sequences used in this technique cannot reveal the fine structure of the spinal cord with precision. We used the readout segmentation of long variable echo-trains (RESOLVE) sequence in this cross-sectional study of 45 healthy volunteers aged 20 to 63 years. We found that the RESOLVE sequence significantly increased the resolution of the diffusion images and improved the median signal-to-noise ratio of the middle (C4-6) and lower (C7-T1) cervical segments to the level of the upper cervical segment. In addition, the values of fractional anisotropy and radial diffusivity were significantly higher in white matter than in gray matter. Our study verified that the RESOLVE sequence could improve resolution of diffusion tensor imaging in clinical applications and provide accurate baseline data for the diagnosis and treatment of cervical spinal cord diseases.
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Affiliation(s)
- Bu-Tian Zhang
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
| | - Meng Li
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
| | - Li-Li Yu
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
| | - Yi-Meng Dai
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
| | - Shao-Nan Yu
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
| | - Jin-Lan Jiang
- China-Japan Union Hospital of Jilin University, Changchun, Jilin Province, China
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192
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Abstract
The aim of this study was to analyze how measurement error affects the validity of modeling studies in computational neuroscience. A synthetic validity test was created using simulated P300 event-related potentials as an example. The model space comprised four computational models of single-trial P300 amplitude fluctuations which differed in terms of complexity and dependency. The single-trial fluctuation of simulated P300 amplitudes was computed on the basis of one of the models, at various levels of measurement error and at various numbers of data points. Bayesian model selection was performed based on exceedance probabilities. At very low numbers of data points, the least complex model generally outperformed the data-generating model. Invalid model identification also occurred at low levels of data quality and under low numbers of data points if the winning model's predictors were closely correlated with the predictors from the data-generating model. Given sufficient data quality and numbers of data points, the data-generating model could be correctly identified, even against models which were very similar to the data-generating model. Thus, a number of variables affects the validity of computational modeling studies, and data quality and numbers of data points are among the main factors relevant to the issue. Further, the nature of the model space (i.e., model complexity, model dependency) should not be neglected. This study provided quantitative results which show the importance of ensuring the validity of computational modeling via adequately prepared studies. The accomplishment of synthetic validity tests is recommended for future applications. Beyond that, we propose to render the demonstration of sufficient validity via adequate simulations mandatory to computational modeling studies.
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Affiliation(s)
- Antonio Kolossa
- Department of Neurology, Hannover Medical School Hannover, Germany
| | - Bruno Kopp
- Department of Neurology, Hannover Medical School Hannover, Germany
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193
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Kuhn FP, Spinner G, Del Grande F, Wyss M, Piccirelli M, Erni S, Pfister P, Ho M, Sah BR, Filli L, Ettlin DA, Gallo LM, Andreisek G, Manoliu A. MR imaging of the temporomandibular joint: comparison between acquisitions at 7.0 T using dielectric pads and 3.0 T. Dentomaxillofac Radiol 2016; 46:20160280. [PMID: 27704872 DOI: 10.1259/dmfr.20160280] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
OBJECTIVES To qualitatively and quantitatively compare MRI of the temporomandibular joint (TMJ) at 7.0 T using high-permittivity dielectric pads and 3.0 T using a clinical high-resolution protocol. METHODS Institutional review board-approved study with written informed consent. 12 asymptomatic volunteers were imaged at 7.0 and 3.0 T using 32-channel head coils. High-permittivity dielectric pads consisting of barium titanate in deuterated suspension were used for imaging at 7.0 T. Imaging protocol consisted of oblique sagittal proton density weighted turbo spin echo sequences. For quantitative analysis, pixelwise signal-to-noise ratio maps of the TMJ were calculated. For qualitative analysis, images were evaluated by two independent readers using 5-point Likert scales. Quantitative and qualitative results were compared using t-tests and Wilcoxon signed-rank tests, respectively. RESULTS TMJ imaging at 7.0 T using high-permittivity dielectric pads was feasible in all volunteers. Quantitative analysis showed similar signal-to-noise ratio for both field strengths (mean ± SD; 7.0 T, 13.02 ± 3.92; 3.0 T, 14.02 ± 3.41; two-sample t-tests, p = 0.188). At 7.0 T, qualitative analysis yielded better visibility of all anatomical subregions of the temporomandibular disc (anterior band, intermediate zone and posterior band) than 3.0 T (Wilcoxon signed-rank tests, p < 0.05, corrected for multiple comparisons). CONCLUSIONS MRI of the TMJ at 7.0 T using high-permittivity dielectric pads yields superior visibility of the temporomandibular disc compared with 3.0 T.
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Affiliation(s)
- Felix P Kuhn
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Georg Spinner
- 2 Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Filippo Del Grande
- 3 Department of Diagnostic and Interventional Radiology, Ospedale Regionale di Lugano, Lugano, Switzerland
| | - Michael Wyss
- 2 Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Marco Piccirelli
- 4 Department of Neuroradiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Stefan Erni
- 5 Center of Dental Medicine, University of Zurich, Zurich, Switzerland
| | - Pascal Pfister
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Michael Ho
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Bert-Ram Sah
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Lukas Filli
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Dominik A Ettlin
- 5 Center of Dental Medicine, University of Zurich, Zurich, Switzerland
| | - Luigi M Gallo
- 5 Center of Dental Medicine, University of Zurich, Zurich, Switzerland
| | - Gustav Andreisek
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Andrei Manoliu
- 1 Institute for Diagnostic and Interventional Radiology, Department of Radiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland.,2 Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zurich, Switzerland.,6 Psychiatric University Hospital, Department of Psychiatry, Psychotherapy and Psychosomatics, University of Zurich, Zurich, Switzerland
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194
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Ni R, Bender DA, Shanechi AM, Gamble JR, Barbour DL. Contextual effects of noise on vocalization encoding in primary auditory cortex. J Neurophysiol 2016; 117:713-727. [PMID: 27881720 DOI: 10.1152/jn.00476.2016] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 11/17/2016] [Indexed: 11/22/2022] Open
Abstract
Robust auditory perception plays a pivotal function for processing behaviorally relevant sounds, particularly with distractions from the environment. The neuronal coding enabling this ability, however, is still not well understood. In this study, we recorded single-unit activity from the primary auditory cortex (A1) of awake marmoset monkeys (Callithrix jacchus) while delivering conspecific vocalizations degraded by two different background noises: broadband white noise and vocalization babble. Noise effects on neural representation of target vocalizations were quantified by measuring the responses' similarity to those elicited by natural vocalizations as a function of signal-to-noise ratio. A clustering approach was used to describe the range of response profiles by reducing the population responses to a summary of four response classes (robust, balanced, insensitive, and brittle) under both noise conditions. This clustering approach revealed that, on average, approximately two-thirds of the neurons change their response class when encountering different noises. Therefore, the distortion induced by one particular masking background in single-unit responses is not necessarily predictable from that induced by another, suggesting the low likelihood of a unique group of noise-invariant neurons across different background conditions in A1. Regarding noise influence on neural activities, the brittle response group showed addition of spiking activity both within and between phrases of vocalizations relative to clean vocalizations, whereas the other groups generally showed spiking activity suppression within phrases, and the alteration between phrases was noise dependent. Overall, the variable single-unit responses, yet consistent response types, imply that primate A1 performs scene analysis through the collective activity of multiple neurons. NEW & NOTEWORTHY The understanding of where and how auditory scene analysis is accomplished is of broad interest to neuroscientists. In this paper, we systematically investigated neuronal coding of multiple vocalizations degraded by two distinct noises at various signal-to-noise ratios in nonhuman primates. In the process, we uncovered heterogeneity of single-unit representations for different auditory scenes yet homogeneity of responses across the population.
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Affiliation(s)
- Ruiye Ni
- Laboratory of Sensory Neuroscience and Neuroengineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri
| | - David A Bender
- Laboratory of Sensory Neuroscience and Neuroengineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri
| | - Amirali M Shanechi
- Laboratory of Sensory Neuroscience and Neuroengineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri
| | - Jeffrey R Gamble
- Laboratory of Sensory Neuroscience and Neuroengineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri
| | - Dennis L Barbour
- Laboratory of Sensory Neuroscience and Neuroengineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri
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195
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Zhang G, Liu M, Guo N, Zhang W. Design of the MEMS Piezoresistive Electronic Heart Sound Sensor. Sensors (Basel) 2016; 16:E1728. [PMID: 27827981 DOI: 10.3390/s16111728] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Revised: 10/03/2016] [Accepted: 10/11/2016] [Indexed: 11/16/2022]
Abstract
This paper proposes the electronic heart sound sensor, based on the piezoresistive principle and MEMS (Micro-Electro-Mechanical System) technology. Firstly, according to the characteristics of heart sound detection, the double-beam-block microstructure has been proposed, and the theoretical analysis and finite element method (FEM) simulation have been carried out. Combined with the natural frequency response of the heart sound (20~600 Hz), its structure sizes have been determined. Secondly, the processing technology of the microstructure with the stress concentration grooves has been developed. The material and sizes of the package have been determined by the three-layer medium transmission principle. Lastly, the MEMS piezoresistive electronic heart sound sensor has been tested compared with the 3200-type electronic stethoscope from 3M (São Paulo, MN, USA). The test results show that the heart sound waveform tested by the MEMS electronic heart sound sensor are almost the same as that tested by the 3200-type electronic stethoscope. Moreover, its signal-to-noise ratio is significantly higher. Compared with the traditional stethoscope, the MEMS heart sound sensor can provide the first and second heart sounds containing more abundant information about the lesion. Compared with the 3200-type electronic stethoscope from 3M, it has better performance and lower cost.
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196
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Komlosi P, Altes TA, Qing K, Mooney KE, Miller GW, Mata JF, de Lange EE, Tobias WA, Cates GD, Mugler JP. Signal-to-noise ratio, T 2 , and T2* for hyperpolarized helium-3 MRI of the human lung at three magnetic field strengths. Magn Reson Med 2016; 78:1458-1463. [PMID: 27791285 DOI: 10.1002/mrm.26516] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 09/07/2016] [Accepted: 09/26/2016] [Indexed: 11/08/2022]
Abstract
PURPOSE To evaluate T2 , T2*, and signal-to-noise ratio (SNR) for hyperpolarized helium-3 (3 He) MRI of the human lung at three magnetic field strengths ranging from 0.43T to 1.5T. METHODS Sixteen healthy volunteers were imaged using a commercial whole body scanner at 0.43T, 0.79T, and 1.5T. Whole-lung T2 values were calculated from a Carr-Purcell-Meiboom-Gill spin-echo-train acquisition. T2* maps and SNR were determined from dual-echo and single-echo gradient-echo images, respectively. Mean whole-lung SNR values were normalized by ventilated lung volume and administered 3 He dose. RESULTS As expected, T2 and T2* values demonstrated a significant inverse relationship to field strength. Hyperpolarized 3 He images acquired at all three field strengths had comparable SNR values and thus appeared visually very similar. Nonetheless, the relatively small SNR differences among field strengths were statistically significant. CONCLUSIONS Hyperpolarized 3 He images of the human lung with similar image quality were obtained at three field strengths ranging from 0.43T and 1.5T. The decrease in susceptibility effects at lower fields that are reflected in longer T2 and T2* values may be advantageous for optimizing pulse sequences inherently sensitive to such effects. The three-fold increase in T2* at lower field strength would allow lower receiver bandwidths, providing a concomitant decrease in noise and relative increase in SNR. Magn Reson Med 78:1458-1463, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Peter Komlosi
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - Talissa A Altes
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - Kun Qing
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - Karen E Mooney
- Department of Physics, University of Virginia, Charlottesville, Virginia, USA
| | - G Wilson Miller
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - Jaime F Mata
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - Eduard E de Lange
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
| | - William A Tobias
- Department of Physics, University of Virginia, Charlottesville, Virginia, USA
| | - Gordon D Cates
- Department of Physics, University of Virginia, Charlottesville, Virginia, USA
| | - John P Mugler
- Center for In-vivo Hyperpolarized Gas MR Imaging, Department of Radiology & Medical Imaging, University of Virginia, Charlottesville, Virginia, USA
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197
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Jin J, Chen M, Li Y, Wang Y, Zhang S, Wang Z, Wang L, Ju S. Detecting Acute Myocardial Infarction by Diffusion-Weighted versus T2-Weighted Imaging and Myocardial Necrosis Markers. Tex Heart Inst J 2016; 43:383-391. [PMID: 27777517 DOI: 10.14503/thij-15-5462] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
We used a porcine model of acute myocardial infarction to study the signal evolution of ischemic myocardium on diffusion-weighted magnetic resonance images (DWI). Eight Chinese miniature pigs underwent percutaneous left anterior descending or left circumflex coronary artery occlusion for 90 minutes followed by reperfusion, which induced acute myocardial infarction. We used DWI preprocedurally and hourly for 4 hours postprocedurally. We acquired turbo inversion recovery magnitude T2-weighted images (TIRM T2WI) and late gadolinium enhancement images from the DWI slices. We measured the serum myocardial necrosis markers myoglobin, creatine kinase-MB isoenzyme, and cardiac troponin I at the same time points as the magnetic resonance scanning. We used histochemical staining to confirm injury. All images were analyzed qualitatively. Contrast-to-noise ratio (the contrast between infarcted and healthy myocardium) and relative signal index were used in quantitative image analysis. We found that DWI identified myocardial signal abnormity early (<4 hr) after acute myocardial infarction and identified the infarct-related high signal more often than did TIRM T2WI: 7 of 8 pigs (87.5%) versus 3 of 8 (37.5%) (P=0.046). Quantitative image analysis yielded a significant difference in contrast-to-noise ratio and relative signal index between infarcted and normal myocardium on DWI. However, within 4 hours after infarction, the serologic myocardial injury markers were not significantly positive. We conclude that DWI can be used to detect myocardial signal abnormalities early after acute myocardial infarction-identifying the infarction earlier than TIRM T2WI and widely used clinical serologic biomarkers.
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198
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Fogli Iseppe A, Pignatelli A, Belluzzi O. Calretinin-Periglomerular Interneurons in Mice Olfactory Bulb: Cells of Few Words. Front Cell Neurosci 2016; 10:231. [PMID: 27774053 PMCID: PMC5054022 DOI: 10.3389/fncel.2016.00231] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 09/23/2016] [Indexed: 01/11/2023] Open
Abstract
Within the olfactory bulb (OB), periglomerular (PG) cells consist of various types of interneurons, generally classified by their chemical properties such as neurotransmitter and calcium binding proteins. Calretinin (CR) characterizes morphologically and functionally the more numerous and one of the less known subpopulation of PG cells in the OB. Using of transgenic mice expressing eGFP under the CR promoter, we have tried to obtain the first functional characterization of these cells. Electrophysiological recordings were made in these cells using the patch-clamp technique in thin slices. Using ion substitution methods and specific blockers, we dissected the main voltage-dependent conductances present, obtaining a complete kinetic description for each of them. The more peculiar property of these cells from the electrophysiological point of view is the presence only of a single K-current, A-type – there is no trace of delayed rectifier or of Ca-dependent K-current. Other currents identified, isolated and fully characterized are a fast sodium current, a small L-type calcium current, and an inward rectifier, h-type cationic current. As a consequence of the peculiar complement of voltage-dependent conductances present in these cells, and in particular the absence of delayed-rectifier potassium currents, under the functional point of view these cells present two interesting properties. First, in response to prolonged depolarisations, after the inactivation of the A-current these cells behave as a purely ohmic elements, showing no outward rectification. Second, the CR cells studied can respond only with a single action potential to excitatory inputs; since they send inhibitory synapses to projection neurones, they seem to be designed to inhibit responses of the main neurones to isolated, random excitatory signals, rapidly losing their vetoing effect in response to more structured, repetitive excitatory signals. We propose that a possible role for these rather untalkative interneurons in the intense exchange of messages within the OB might be that of improving the signal-to-noise ratio in the first stages of the olfactory information processing.
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Affiliation(s)
- Alex Fogli Iseppe
- Biology and Evolution - Neurobiology, Department of Life Sciences and Biotechnology, University of FerraraFerrara, Italy; Department of Neurobiology, Physiology and Behavior, University of California at Davis, DavisCA, USA
| | - Angela Pignatelli
- Biology and Evolution - Neurobiology, Department of Life Sciences and Biotechnology, University of Ferrara Ferrara, Italy
| | - Ottorino Belluzzi
- Biology and Evolution - Neurobiology, Department of Life Sciences and Biotechnology, University of Ferrara Ferrara, Italy
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199
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Park B, Kim J, Kang D, Jeong C, Kim KS, Kim JU, Yoo PJ, Kim TI. Dramatically Enhanced Mechanosensitivity and Signal-to-Noise Ratio of Nanoscale Crack-Based Sensors: Effect of Crack Depth. Adv Mater 2016; 28:8130-8137. [PMID: 27396592 DOI: 10.1002/adma.201602425] [Citation(s) in RCA: 129] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2016] [Revised: 06/17/2016] [Indexed: 05/07/2023]
Abstract
The sensitivity of a nanoscale crack-based sensor is enhanced markedly by modulating the crack depth. The crack-depth-propagated sensor exhibits ≈16 000 gauge factor at 2% strain and a superior signal-to-noise ratio of ≈35, which facilitates detection of target signals for voice-pattern recognition.
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Affiliation(s)
- Byeonghak Park
- School of Chemical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Jisun Kim
- School of Chemical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Daeshik Kang
- Department of Mechanical Engineering, Ajou University, Suwon, 16499, Republic of Korea
| | - Chanho Jeong
- Center for Neuroscience Imaging Research (CNIR), Institute of Basic Science (IBS), Suwon, 16419, Republic of Korea
- Department of Biomedical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Kwang Su Kim
- SKKU Advanced Institute of Nanoscience and Technology (SAINT), Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Jong Uk Kim
- School of Chemical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Pil J Yoo
- School of Chemical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
- SKKU Advanced Institute of Nanoscience and Technology (SAINT), Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea
| | - Tae-Il Kim
- School of Chemical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea.
- Center for Neuroscience Imaging Research (CNIR), Institute of Basic Science (IBS), Suwon, 16419, Republic of Korea.
- Department of Biomedical Engineering, Sungkyunkwan University (SKKU), Suwon, 16419, Republic of Korea.
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200
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Abstract
The birdcage (BC) coil is currently being utilized for uniform radiofrequency (RF) transmit/receive (Tx/Rx) or Tx-only configuration in many magnetic resonance (MR) imaging applications, but insufficient magnetic flux (|B1|) density and their non-uniform distribution still exists in high-field (HF) environments. We demonstrate that the asymmetric birdcage (ABC) transmit/receive (Tx/Rx) volume coil, which is a modified standard birdcage (SBC) coil with the end ring split into two halves, is suitable for improving the |B1| sensitivity in 7T small-animal MR imaging. Cylindrical SBC and ABC coils with 35 mm diameter were constructed and bench tested for mouse body MR imaging at 300 MHz using a 7T scanner. To assess the ABC coil performance, computational electromagnetic (EM) simulation and 7T MR experiment were performed by using a cylindrical phantom and in vivo mouse body and quantitatively compared with the SBC coil in terms of |B1| distribution, RF transmit (|B1+|) field, and signal-to-noise ratio (SNR). The bench measurements of the two BC coils are similar, yielding a quality value (Q-value) of 74.42 for the SBC coil and 77.06 for the ABC coil. The computational calculation results clearly show that the proposed ABC coil offers superior |B1| field and |B1+| field sensitivity in the central axial slice compared with the SBC coil. There was also high SNR and uniformly distributed flip angle (FA) under the loaded condition of mouse body in the 7T experiment. Although ABC geometry allows a further increase in the |B1| field and |B1+| field sensitivity in only the central axial slice, the geometrical modification of the SBC coil can make a high performance RF coil feasible in the central axial slice and also make target imaging possible in the diagonal direction.
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Affiliation(s)
- Kyoung-Nam Kim
- Center for Molecular and Cellular Imaging, Samsung Biomedical Research Institute
| | - Sang-Doc Han
- Center for Molecular and Cellular Imaging, Samsung Biomedical Research Institute
| | - Jeung-Hoon Seo
- Center for Molecular and Cellular Imaging, Samsung Biomedical Research Institute
| | - Phil Heo
- Department of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology, Sungkyunkwan University
| | - Dongkyeom Yoo
- Center for Molecular and Cellular Imaging, Samsung Biomedical Research Institute
| | - Geun Ho Im
- Center for Molecular and Cellular Imaging, Samsung Biomedical Research Institute
| | - Jung Hee Lee
- Department of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology, Sungkyunkwan University.,Department of Radiology, Samsung Medical Center, Sungkyunkwan University School of Medicine
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