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For: Zhang N, Gorin A, Majumdar A, Kettani A, Chernichenko N, Skripkin E, Patel DJ. V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads. J Mol Biol 2001;311:1063-79. [PMID: 11531340 DOI: 10.1006/jmbi.2001.4916] [Citation(s) in RCA: 70] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
51
Liu X, Kwan ICM, Wang S, Wu G. G-Quartet Formation from an N2-Modified Guanosine Derivative. Org Lett 2006;8:3685-8. [PMID: 16898792 DOI: 10.1021/ol061236w] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
52
Phan AT, Kuryavyi V, Patel DJ. DNA architecture: from G to Z. Curr Opin Struct Biol 2006;16:288-98. [PMID: 16714104 PMCID: PMC4689308 DOI: 10.1016/j.sbi.2006.05.011] [Citation(s) in RCA: 215] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2006] [Revised: 04/10/2006] [Accepted: 05/10/2006] [Indexed: 12/27/2022]
53
Mergny JL, De Cian A, Amrane S, da Silva MW. Kinetics of double-chain reversals bridging contiguous quartets in tetramolecular quadruplexes. Nucleic Acids Res 2006;34:2386-97. [PMID: 16682446 PMCID: PMC1458523 DOI: 10.1093/nar/gkl098] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
54
Zhang N, Phan AT, Patel DJ. (3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J Am Chem Soc 2006;127:17277-85. [PMID: 16332077 PMCID: PMC4693638 DOI: 10.1021/ja0543090] [Citation(s) in RCA: 96] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
55
Phan AT, Kuryavyi V, Gaw HY, Patel DJ. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat Chem Biol 2005;1:167-73. [PMID: 16408022 PMCID: PMC4690526 DOI: 10.1038/nchembio723] [Citation(s) in RCA: 424] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2005] [Accepted: 06/24/2005] [Indexed: 12/29/2022]
56
Chou SH, Chin KH, Wang AHJ. DNA aptamers as potential anti-HIV agents. Trends Biochem Sci 2005;30:231-4. [PMID: 15896739 DOI: 10.1016/j.tibs.2005.03.004] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
57
Webba da Silva M. Experimental demonstration of T:(G:G:G:G):T hexad and T:A:A:T tetrad alignments within a DNA quadruplex stem. Biochemistry 2005;44:3754-64. [PMID: 15751952 DOI: 10.1021/bi0478190] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
58
Sket P, Crnugelj M, Plavec J. d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions. Bioorg Med Chem 2005;12:5735-44. [PMID: 15498650 DOI: 10.1016/j.bmc.2004.08.009] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2004] [Accepted: 08/03/2004] [Indexed: 10/26/2022]
59
Phan AT, Kuryavyi V, Ma JB, Faure A, Andréola ML, Patel DJ. An interlocked dimeric parallel-stranded DNA quadruplex: a potent inhibitor of HIV-1 integrase. Proc Natl Acad Sci U S A 2005;102:634-9. [PMID: 15637158 PMCID: PMC545538 DOI: 10.1073/pnas.0406278102] [Citation(s) in RCA: 194] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
60
Phan AT, Modi YS, Patel DJ. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J Am Chem Soc 2004;126:8710-6. [PMID: 15250723 PMCID: PMC4692381 DOI: 10.1021/ja048805k] [Citation(s) in RCA: 426] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
61
Phan AT, Patel DJ. Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics. J Am Chem Soc 2004;125:15021-7. [PMID: 14653736 PMCID: PMC4693644 DOI: 10.1021/ja037616j] [Citation(s) in RCA: 227] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
62
Crnugelj M, Sket P, Plavec J. Small change in a G-rich sequence, a dramatic change in topology: new dimeric G-quadruplex folding motif with unique loop orientations. J Am Chem Soc 2003;125:7866-71. [PMID: 12823005 DOI: 10.1021/ja0348694] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
63
Pan B, Xiong Y, Shi K, Deng J, Sundaralingam M. Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: implications for specific binding in RNA tetraplexes. Structure 2003;11:815-23. [PMID: 12842044 DOI: 10.1016/s0969-2126(03)00107-2] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
64
Chou SH, Chin KH, Wang AHJ. Unusual DNA duplex and hairpin motifs. Nucleic Acids Res 2003;31:2461-74. [PMID: 12736295 PMCID: PMC156048 DOI: 10.1093/nar/gkg367] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
65
Escaja N, Gelpí JL, Orozco M, Rico M, Pedroso E, González C. Four-stranded DNA structure stabilized by a novel G:C:A:T tetrad. J Am Chem Soc 2003;125:5654-62. [PMID: 12733903 DOI: 10.1021/ja0344157] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
66
Zarudnaya MI, Potyahaylo AL, Kolomiets IM, Hovorun DM. Auxiliary elements of mammalian pre-mRNAs polyadenylation signals. ACTA ACUST UNITED AC 2002. [DOI: 10.7124/bc.00062e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
67
Crnugelj M, Hud NV, Plavec J. The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold. J Mol Biol 2002;320:911-24. [PMID: 12126614 DOI: 10.1016/s0022-2836(02)00569-7] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
68
Ren J, Qu X, Trent JO, Chaires JB. Tiny telomere DNA. Nucleic Acids Res 2002;30:2307-15. [PMID: 12034817 PMCID: PMC117210 DOI: 10.1093/nar/30.11.2307] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
69
Sühnel J. Beyond nucleic acid base pairs: from triads to heptads. Biopolymers 2002;61:32-51. [PMID: 11891627 DOI: 10.1002/1097-0282(2001)61:1<32::aid-bip10063>3.0.co;2-b] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
70
Majumdar A, Patel DJ. Identifying hydrogen bond alignments in multistranded DNA architectures by NMR. Acc Chem Res 2002;35:1-11. [PMID: 11790083 DOI: 10.1021/ar010097+] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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