51
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Petrovičová T, Gyuranová D, Plž M, Myrtollari K, Smonou I, Rebroš M. Application of robust ketoreductase from Hansenula polymorpha for the reduction of carbonyl compounds. MOLECULAR CATALYSIS 2021. [DOI: 10.1016/j.mcat.2020.111364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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52
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Enzymatic clarification of orange juice in continuous bed reactors: Fluidized-bed versus packed-bed reactor. Catal Today 2021. [DOI: 10.1016/j.cattod.2020.02.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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53
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Hinzmann A, Betke T, Asano Y, Gröger H. Synthetic Processes toward Nitriles without the Use of Cyanide: A Biocatalytic Concept Based on Dehydration of Aldoximes in Water. Chemistry 2021; 27:5313-5321. [PMID: 33112445 PMCID: PMC8049032 DOI: 10.1002/chem.202001647] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 10/22/2020] [Indexed: 11/29/2022]
Abstract
While belonging to the most fundamental functional groups, nitriles represent a class of compound that still raises challenges in terms of an efficient, cost‐effective, general and, at the same time, sustainable way for their synthesis. Complementing existing chemical routes, recently a cyanide‐free enzymatic process technology based on the use of an aldoxime dehydratase (Oxd) as a biocatalyst component has been developed and successfully applied for the synthesis of a range of nitrile products. In these biotransformations, the Oxd enzymes catalyze the dehydration of aldoximes as readily available substrates to the nitrile products. Herein, these developments with such enzymes are summarized, with a strong focus on synthetic applications. It is demonstrated that this biocatalytic technology has the potential to “cross the bridge” between the production of fine chemicals and pharmaceuticals, on one hand, and bulk and commodity chemicals, on the other.
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Affiliation(s)
- Alessa Hinzmann
- Chair of Industrial Organic Chemistry and Biotechnology, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615, Bielefeld, Germany
| | - Tobias Betke
- Chair of Industrial Organic Chemistry and Biotechnology, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615, Bielefeld, Germany
| | - Yasuhisa Asano
- Biotechnology Research Center, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama, 939-0398, Japan
| | - Harald Gröger
- Chair of Industrial Organic Chemistry and Biotechnology, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615, Bielefeld, Germany
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54
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Lipase-Catalyzed Kinetic Resolution of Alcohols as Intermediates for the Synthesis of Heart Rate Reducing Agent Ivabradine. Catalysts 2021. [DOI: 10.3390/catal11010053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Ivabradine (Corlanor®), is a chiral benzocycloalkane currently employed and commercialized for the treatment of chronic stable angina pectoris and for the reduction in sinus tachycardia. The eutomer (S)-ivabradine is usually produced via chiral resolution of intermediates, by employing enantiopure auxiliary molecules or through preparative chiral HPLC separations. Recently, more sustainable biocatalytic approaches have been reported in literature for the preparation of the chiral amine precursor. In this work, we report on a novel biocatalyzed pathway, via a resolution study of a key alcohol intermediate used as a precursor of the chiral amine. After screening several enzymatic reaction conditions, employing different lipases and esterases both for the esterification and hydrolysis reactions, the best result was achieved with Pseudomonas cepacia Lipase and the final product was obtained in up to 96:4 enantiomeric ratio (e.r.) of an ivabradine alcohol precursor. This enantiomer was then efficiently converted into the desired amine in a facile three step synthetic sequence.
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Verma NK, Kumar S, Basotra SD, Jain A, Vij M, Prasad G, Bhattacharyya MS. Biocatalytic reduction of prochiral ketones to enantiopure alcohols by novel yeast isolates from unique biodiversity. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2020.101547] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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56
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Slagman S, Fessner WD. Biocatalytic routes to anti-viral agents and their synthetic intermediates. Chem Soc Rev 2021; 50:1968-2009. [DOI: 10.1039/d0cs00763c] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
An assessment of biocatalytic strategies for the synthesis of anti-viral agents, offering guidelines for the development of sustainable production methods for a future COVID-19 remedy.
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Affiliation(s)
- Sjoerd Slagman
- Institut für Organische Chemie und Biochemie
- Technische Universität Darmstadt
- Germany
| | - Wolf-Dieter Fessner
- Institut für Organische Chemie und Biochemie
- Technische Universität Darmstadt
- Germany
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57
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Pires IS, Palmer AF. Selective protein purification via tangential flow filtration – Exploiting protein-protein complexes to enable size-based separations. J Memb Sci 2021. [DOI: 10.1016/j.memsci.2020.118712] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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58
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Alagöz D, Toprak A, Yildirim D, Tükel SS, Fernandez-Lafuente R. Modified silicates and carbon nanotubes for immobilization of lipase from Rhizomucor miehei: Effect of support and immobilization technique on the catalytic performance of the immobilized biocatalysts. Enzyme Microb Technol 2020; 144:109739. [PMID: 33541574 DOI: 10.1016/j.enzmictec.2020.109739] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2020] [Revised: 12/11/2020] [Accepted: 12/25/2020] [Indexed: 11/17/2022]
Abstract
Lipase from Rhizomucor miehei (RML) was covalently immobilized on different supports, two silica gels and two carbon nanotube samples, using two different strategies. RML was immobilized on 3-carboxypropyl silica gel (RML@Si-COOH) and multi-wall carbon nanotubes containing carboxylic acid functionalities (RML@MCNT-COOH) using a two-step carbodiimide activation/immobilization reaction. Moreover, the enzyme was also immobilized on 3-aminopropyl silica (RML@Si-Glu) and single-wall carbon nanotubes functionalized with 3-APTES and activated with glutaraldehyde (RML@SCNT-Glu). Before and after RML immobilization, the structurel properties of supports were characterized and compared in detail. After immobilization, the expressed activities were 36.9, 90.2, 16.9, and 26.1 % for RML@Si-COOH, RML@Si-Glu, RML@MCNT-COOH, and RML@SCNT-Glu, respectively. The kinetic parameters of free and immobilized RML samples were determined for three substrates, p-nitrophenyl acetate, p-nitrophenyl butyrate and p-nitrophenyl palmitate, and RML@Si-Glu showed higher catalytic efficiency than the other immobilized RML samples. RML@Si-COOH, RML@Si-Glu, RML@MCNT-COOH, and RML@SCNT-Glu exhibited 5.8, 7.6, 4.2 and 4.6 folds longer half-life values than those of the free enzyme at pH 7.5 and 40 °C. Recyclability studies showed that all the immobilized RML biocatalysts retained over 90 % of their initial activities after ten cycles in the hydrolysis of p-nitrophenyl butyrate.
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Affiliation(s)
- Dilek Alagöz
- Cukurova University, Imamoglu Vocational School, Adana, Turkey.
| | - Ali Toprak
- Cukurova University, Sciences & Letters Faculty, Chemistry Department, 01330, Adana, Turkey
| | - Deniz Yildirim
- Cukurova University, Ceyhan Engineering Faculty, Chemical Engineering Department, Adana, Turkey
| | - S Seyhan Tükel
- Cukurova University, Sciences & Letters Faculty, Chemistry Department, 01330, Adana, Turkey
| | - Roberto Fernandez-Lafuente
- Departamento De Biocatalisis, ICP-CSIC, C/Marie Crue 2, Campus UAM-CSIC, Cantoblanco, 28049, Madrid, Spain; Center of Excellence in Bionanoscience Research, Member of The External Scientific Advisory Board, King Abdulaziz University, Jeddah, Saudi Arabia.
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59
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Alpdagtas S, Binay B. Nadp+-dependent formate dehydrogenase: a review. BIOCATAL BIOTRANSFOR 2020. [DOI: 10.1080/10242422.2020.1865933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Saadet Alpdagtas
- Department of Biology, Faculty of Science, Van Yuzuncu Yil University, Tusba, Turkey
| | - Barış Binay
- Department of Bioengineering, Gebze Technical University, Gebze, Turkey
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60
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Cui H, Zhang L, Eltoukhy L, Jiang Q, Korkunç SK, Jaeger KE, Schwaneberg U, Davari MD. Enzyme Hydration Determines Resistance in Organic Cosolvents. ACS Catal 2020. [DOI: 10.1021/acscatal.0c03233] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Haiyang Cui
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
| | - Lingling Zhang
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
| | - Lobna Eltoukhy
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
| | - Qianjia Jiang
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
| | - Seval Kübra Korkunç
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
| | - Karl-Erich Jaeger
- Institute of Molecular Enzyme Technology, Heinrich Heine University Düsseldorf, Wilhelm Johnen Strasse, Jülich 52426, Germany
- Institute of Bio-and Geosciences IBG 1: Biotechnology, Forschungszentrum Jülich GmbH, Wilhelm Johnen Strasse, Jülich 52426, Germany
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
- DWI-Leibniz Institute for Interactive Materials, Forckenbeckstrasse 50, Aachen 52074, Germany
| | - Mehdi D. Davari
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, Aachen 52074, Germany
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61
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A multi-enzyme strategy for the production of a highly valuable lactonized statin side-chain precursor. Chem Eng Res Des 2020. [DOI: 10.1016/j.cherd.2020.09.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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62
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Cheng B, Wan L, Armstrong FA. Progress in Scaling up and Streamlining a Nanoconfined, Enzyme-Catalyzed Electrochemical Nicotinamide Recycling System for Biocatalytic Synthesis. ChemElectroChem 2020; 7:4672-4678. [PMID: 33381377 PMCID: PMC7756331 DOI: 10.1002/celc.202001166] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 10/13/2020] [Indexed: 11/05/2022]
Abstract
An electrochemically driven nicotinamide recycling system, referred to as the 'electrochemical leaf' has unique attributes that may suit it to the small-scale industrial synthesis of high-value chemicals. A complete enzyme cascade can be immobilized within the channels of a nanoporous electrode, allowing complex reactions to be energized, controlled and monitored continuously in real time. The electrode is easily prepared by depositing commercially available indium tin oxide (ITO) nanoparticles on a Ti support, resulting in a network of nanopores into which enzymes enter and bind. One of the enzymes is the photosynthetic flavoenzyme, ferredoxin NADP+ reductase (FNR), which catalyzes the quasi-reversible electrochemical recycling of NADP(H) and serves as the transducer. The second enzyme is any NADP(H)-dependent dehydrogenase of choice, and further enzymes can be added to build elaborate cascades that are driven in either oxidation or reduction directions through the rapid recycling of NADP(H) within the pores. In this Article, we describe the measurement of key enzyme/cofactor parameters and an essentially linear scale-up from an analytical scale 4 mL reactor with a 14 cm2 electrode to a 500 mL reactor with a 500 cm2 electrode. We discuss the advantages (energization, continuous monitoring that can be linked to a computer, natural enzyme immobilization, low costs of electrodes and low cofactor requirements) and challenges to be addressed (optimizing minimal use of enzyme applied to the electrode).
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Affiliation(s)
- Beichen Cheng
- Department of ChemistryUniversity of OxfordInorganic Chemistry LaboratorySouth Parks RoadOxfordOX1 3QR
| | - Lei Wan
- Department of ChemistryUniversity of OxfordInorganic Chemistry LaboratorySouth Parks RoadOxfordOX1 3QR
| | - Fraser A. Armstrong
- Department of ChemistryUniversity of OxfordInorganic Chemistry LaboratorySouth Parks RoadOxfordOX1 3QR
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63
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Zhang X, Wang B, Alsalme A, Xiang S, Zhang Z, Chen B. Design and applications of water-stable metal-organic frameworks: status and challenges. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2020.213507] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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64
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Begum G, Swathi P, Bandarapu AK, Nayak J, Rana RK. Spatial Confinement of Enzyme and Nanozyme in Silica-Based Hollow Microreactors. ACS APPLIED MATERIALS & INTERFACES 2020; 12:45476-45484. [PMID: 32901482 DOI: 10.1021/acsami.0c11195] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Designing a strategy for encasing enzymes and nanozymes in microreactors with spatial confinement in a way to improve the selectivity and activity of nanozymes is an exciting goal. In the present work, we report a facile route to encapsulate glucose oxidase (GOx) and poly(ethylenimine) (PEI)-conjugated magnetite nanoparticles (Fe3O4-PEI) in the hollow interior of hybrid microreactors. The microreactors are prepared by polyallylamine hydrochloride (PAH)-mediated silica (SiO2) nanoparticle assembly on calcium carbonate (CaCO3) particles as a removable core. By tuning both shape and phase (vaterite/calcite and pure calcite) of CaCO3, it allows generation of GOx and Fe3O4-PEI-encapsulated silica hollow microspheres (GOx-Fe3O4@SHS) and microcubes (GOx-Fe3O4@SHC). As observed, in a biomimetic cascade catalysis, the confined GOx in the microreactors is able to catalyze oxidation of glucose to gluconic acid and hydrogen peroxide (H2O2), followed by the activation of H2O2 by Fe3O4-PEI for the oxidation of the chromogenic substrate o-phenylenediamine (oPD) to 2,3-diaminophenazine. Comparison of the peroxidase-like activity of the encapsulated Fe3O4-PEI shows that the hollow microspheres (GOx-Fe3O4@SHS) result in activity 14 times higher than that of the hollow microcubes (GOx-Fe3O4@SHC), which in turn is corroborated to the differential loading capacity of GOx in microspheres and microcubes. The evaluation of kinetic parameters indicates a fivefold increase in the catalytic constant (kcat) of Fe3O4-PEI confined in hollow microspheres (GOx-Fe3O4@SHS) compared to the mixture comprising free GOx and Fe3O4-PEI in solution. It suggests that the confined space in the microreactors allows the tandem reactions of GOx and Fe3O4-PEI to take place in close proximity, leading to an improved overall activity. This indeed is seen in the kcat obtained for Fe3O4@SHS (GOx added externally during the assay), which is 14 times lower than that of GOx-Fe3O4@SHS.
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Affiliation(s)
- Gousia Begum
- Nanomaterials Laboratory, Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - Patturu Swathi
- Nanomaterials Laboratory, Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - Arun Kumar Bandarapu
- Nanomaterials Laboratory, Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - Jayadev Nayak
- Nanomaterials Laboratory, Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - Rohit Kumar Rana
- Nanomaterials Laboratory, Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
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65
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Méndez MB, Trelles JA, Rivero CW. Decitabine bioproduction using a biocatalyst with improved stability by adding nanocomposites. AMB Express 2020; 10:173. [PMID: 32990767 PMCID: PMC7524979 DOI: 10.1186/s13568-020-01109-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Accepted: 09/09/2020] [Indexed: 01/05/2023] Open
Abstract
A novel IDA-LaNDT derivative was able to reach the highest productivity in the biosynthesis of a well-known antitumoral agent called decitabine. However, the combination of two simple and inexpensive techniques such as ionic absorption and gel entrapment with the incorporation of a bionanocomposite such as bentonite significantly improved the stability of this biocatalyst. These modifications allowed the enhancement of storage stability (for at least 18 months), reusability (400 h of successive batches without significant loss of its initial activity), and thermal and solvent stability with respect to the non-entrapped derivative. Moreover, reaction conditions were optimized by increasing the solubility of 5-aza by dilution with dimethylsulfoxide. Therefore, a scale-up of the bioprocess was assayed using the developed biocatalyst, obtaining 221 mg/L·h of DAC. Finally, green parameters were calculated using the nanostabilized biocatalyst, whose results indicated that it was able to biosynthesize DAC by a smooth, cheap, and environmentally friendly methodology.![]()
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Abstract
Rhododendrol (RD) is a naturally occurring phenolic compound found in many plants. Tyrosinase (Ty) converts RD to RD-catechol and subsequently RD-quinone via two-step oxidation reactions, after which RD-melanin forms spontaneously from RD-quinone. RD is cytotoxic in melanocytes and lung cancer cells, but not in keratinocytes and fibroblasts. However, the function of RD metabolites has not been possible to investigate due to the lack of available high purity metabolites. In this study, an enzymatic strategy for RD-catechol production was devised using engineered cytochrome P450 102A1 (CYP102A1) and Ty, and the product was analyzed using high-performance liquid chromatography (HPLC), LC-MS, and NMR spectroscopy. Engineered CYP102A1 regioselectively produced RD-catechol via hydroxylation at the ortho position of RD. Although RD-quinone was subsequently formed by two step oxidation in Ty catalyzed reactions, L-ascorbic acid (LAA) inhibited RD-quinone formation and contributed to regioselective production of RD-catechol. When LAA was present, the productivity of RD-catechol by Ty was 5.3-fold higher than that by engineered CYP102A1. These results indicate that engineered CYP102A1 and Ty can be used as effective biocatalysts to produce hydroxylated products, and Ty is a more cost-effective biocatalyst for industrial applications than engineered CYP102A1.
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67
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Pinto GB, Mendes FML, Antunes AMDS. Technological Profile of Lipases in the Pharmaceutical Industry. MINI-REV ORG CHEM 2020. [DOI: 10.2174/1570193x16666190913181530] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
In recent decades, enzymes have been the target of considerable research, development,
and innovation. This paper presents an up-to-date overview of the technological application of lipases
in the pharmaceutical industry. Lipases have been used in a variety of ways in the pharmaceutical
industry, both for obtaining bioactive molecules to overcome limitations in the formulation of medicines
and in drug design. This is possible from alternative technologies, such as immobilization and
the use of non-aqueous solvents that allow the use of lipases in commercial-scale processes. In addition,
other technologies have provided the emergence of differentiated and more specific lipases in
order to meet the perspectives of industrial processes. The research indicates that the following years
should be promising for the application of lipase in the industrial biocatalysis and in drug design.
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68
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Preissler J, Reeve HA, Zhu T, Nicholson J, Urata K, Lauterbach L, Wong LL, Vincent KA, Lenz O. Dihydrogen‐Driven NADPH Recycling in Imine Reduction and P450‐Catalyzed Oxidations Mediated by an Engineered O
2
‐Tolerant Hydrogenase. ChemCatChem 2020. [DOI: 10.1002/cctc.202000763] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Janina Preissler
- Institute of Chemistry, Biophysical Chemistry Technische Universität Berlin Straße des 17. Juni 135 10623 Berlin Germany
| | - Holly A. Reeve
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Tianze Zhu
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Jake Nicholson
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Kouji Urata
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Lars Lauterbach
- Institute of Chemistry, Biophysical Chemistry Technische Universität Berlin Straße des 17. Juni 135 10623 Berlin Germany
| | - Luet L. Wong
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Kylie A. Vincent
- Department of Chemistry University of Oxford Inorganic Chemistry Laboratory South Parks Road Oxford OX1 3QR UK
| | - Oliver Lenz
- Institute of Chemistry, Biophysical Chemistry Technische Universität Berlin Straße des 17. Juni 135 10623 Berlin Germany
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69
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A new heterofunctional support for enzyme immobilization: PEI functionalized Fe3O4 MNPs activated with divinyl sulfone. Application in the immobilization of lipase from Thermomyces lanuginosus. Enzyme Microb Technol 2020; 138:109560. [DOI: 10.1016/j.enzmictec.2020.109560] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 02/06/2020] [Accepted: 03/29/2020] [Indexed: 12/15/2022]
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70
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Rinaldi F, Fernández-Lucas J, de la Fuente D, Zheng C, Bavaro T, Peters B, Massolini G, Annunziata F, Conti P, de la Mata I, Terreni M, Calleri E. Immobilized enzyme reactors based on nucleoside phosphorylases and 2'-deoxyribosyltransferase for the in-flow synthesis of pharmaceutically relevant nucleoside analogues. BIORESOURCE TECHNOLOGY 2020; 307:123258. [PMID: 32247276 DOI: 10.1016/j.biortech.2020.123258] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 03/23/2020] [Accepted: 03/24/2020] [Indexed: 06/11/2023]
Abstract
In this work, a mono- and a bi-enzymatic analytical immobilized enzyme reactors (IMERs) were developed as prototypes for biosynthetic purposes and their performances in the in-flow synthesis of nucleoside analogues of pharmaceutical interest were evaluated. Two biocatalytic routes based on nucleoside 2'-deoxyribosyltransferase from Lactobacillus reuteri (LrNDT) and uridine phosphorylase from Clostridium perfrigens (CpUP)/purine nucleoside phosphorylase from Aeromonas hydrophila (AhPNP) were investigated in the synthesis of 2'-deoxy, 2',3'-dideoxy and arabinonucleoside derivatives. LrNDT-IMER catalyzed the synthesis of 5-fluoro-2'-deoxyuridine and 5-iodo-2'-deoxyuridine in 65-59% conversion yield, while CpUP/AhPNP-IMER provided the best results for the preparation of arabinosyladenine (60% conversion yield). Both IMERs proved to be promising alternatives to chemical routes for the synthesis of nucleoside analogues. The developed in-flow system represents a powerful tool for the fast production on analytical scale of nucleosides for preliminary biological tests.
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Affiliation(s)
- Francesca Rinaldi
- Department of Drug Sciences, Università degli Studi di Pavia, I-27100 Pavia, Italy
| | - Jesús Fernández-Lucas
- Applied Biotechnology Group, Universidad Europea de Madrid, 28670 Villaviciosa de Odón, Spain; Grupo de Investigación en Ciencias Naturales y Exactas, GICNEX, Universidad de la Costa, CUC, 080003 Barranquilla, Atlántico, Colombia
| | - Diego de la Fuente
- Department of Biochemistry and Molecular Biology, Faculty of Biology, Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Changping Zheng
- CNRS, IPCM, UMR 8232, Sorbonne Université, 75005 Paris, France
| | - Teodora Bavaro
- Department of Drug Sciences, Università degli Studi di Pavia, I-27100 Pavia, Italy
| | - Benjamin Peters
- Instrumental Analytics R&D, Merck KGaA, DE-64271 Darmstadt, Germany
| | - Gabriella Massolini
- Department of Drug Sciences, Università degli Studi di Pavia, I-27100 Pavia, Italy
| | - Francesca Annunziata
- Department of Pharmaceutical Sciences, Università degli Studi di Milano, I-20133 Milan, Italy
| | - Paola Conti
- Department of Pharmaceutical Sciences, Università degli Studi di Milano, I-20133 Milan, Italy
| | - Isabel de la Mata
- Department of Biochemistry and Molecular Biology, Faculty of Biology, Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Marco Terreni
- Department of Drug Sciences, Università degli Studi di Pavia, I-27100 Pavia, Italy
| | - Enrica Calleri
- Department of Drug Sciences, Università degli Studi di Pavia, I-27100 Pavia, Italy.
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71
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Cano-Flores A, Gómez J, S. Escalona-Torres I, Velasco-Bejarano B. Microorganisms as Biocatalysts and Enzyme Sources. Microorganisms 2020. [DOI: 10.5772/intechopen.90338] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
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72
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Finger-Bou M, Orsi E, van der Oost J, Staals RHJ. CRISPR with a Happy Ending: Non-Templated DNA Repair for Prokaryotic Genome Engineering. Biotechnol J 2020; 15:e1900404. [PMID: 32558098 DOI: 10.1002/biot.201900404] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 05/04/2020] [Indexed: 12/18/2022]
Abstract
The exploration of microbial metabolism is expected to support the development of a sustainable economy and tackle several problems related to the burdens of human consumption. Microorganisms have the potential to catalyze processes that are currently unavailable, unsustainable and/or inefficient. Their metabolism can be optimized and further expanded using tools like the clustered regularly interspaced short palindromic repeats and their associated proteins (CRISPR-Cas) systems. These tools have revolutionized the field of biotechnology, as they greatly streamline the genetic engineering of organisms from all domains of life. CRISPR-Cas and other nucleases mediate double-strand DNA breaks, which must be repaired to prevent cell death. In prokaryotes, these breaks can be repaired through either homologous recombination, when a DNA repair template is available, or through template-independent end joining, of which two major pathways are known. These end joining pathways depend on different sets of proteins and mediate DNA repair with different outcomes. Understanding these DNA repair pathways can be advantageous to steer the results of genome engineering experiments. In this review, we discuss different strategies for the genetic engineering of prokaryotes through either non-homologous end joining (NHEJ) or alternative end joining (AEJ), both of which are independent of exogenous DNA repair templates.
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Affiliation(s)
- Max Finger-Bou
- Laboratory of Microbiology, Wageningen University and Research, Wageningen, 6708 WE, The Netherlands
| | - Enrico Orsi
- Bioprocess Engineering, Wageningen University and Research, Wageningen, 6708 PB, The Netherlands
| | - John van der Oost
- Laboratory of Microbiology, Wageningen University and Research, Wageningen, 6708 WE, The Netherlands
| | - Raymond H J Staals
- Laboratory of Microbiology, Wageningen University and Research, Wageningen, 6708 WE, The Netherlands
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73
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A Review on Bio-Based Catalysts (Immobilized Enzymes) Used for Biodiesel Production. ENERGIES 2020. [DOI: 10.3390/en13113013] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The continuous increase of the world’s population results in an increased demand for energy drastically from the industrial and domestic sectors as well. Moreover, the current public awareness regarding issues such as pollution and overuse of petroleum fuel has resulted in the development of research approaches concerning alternative renewable energy sources. Amongst the various options for renewable energies used in transportation systems, biodiesel is considered the most suitable replacement for fossil-based diesel. In what concerns the industrial application for biodiesel production, homogeneous catalysts such as sodium hydroxide, potassium hydroxide, sulfuric acid, and hydrochloric acid are usually selected, but their removal after reaction could prove to be rather complex and sometimes polluting, resulting in increases on the production costs. Therefore, there is an open field for research on new catalysts regarding biodiesel production, which can comprise heterogeneous catalysts. Apart from that, there are other alternatives to these chemical catalysts. Enzymatic catalysts have also been used in biodiesel production by employing lipases as biocatalysts. For economic reasons, and reusability and recycling, the lipases urged to be immobilized on suitable supports, thus the concept of heterogeneous biocatalysis comes in existence. Just like other heterogeneous catalytic materials, this one also presents similar issues with inefficiency and mass-transfer limitations. A solution to overcome the said limitations can be to consider the use of nanostructures to support enzyme immobilization, thus obtaining new heterogeneous biocatalysts. This review mainly focuses on the application of enzymatic catalysts as well as nano(bio)catalysts in transesterification reaction and their multiple methods of synthesis.
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74
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Yu S, Chen T, Zhang Q, Zhou M, Zhu X. Application of DNA nanodevices for biosensing. Analyst 2020; 145:3481-3489. [PMID: 32319463 DOI: 10.1039/d0an00159g] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Deoxyribonucleic acid (DNA), the carrier of genetic information in living life, is an essential biomacromolecule in almost all living systems. DNA has advantages including, programmability, predictability, high rigidity, and stability. Through self-assembly or combination with other nanomaterials (such as gold nanoparticles, graphene oxides, quantum dots, and polymers), DNA can be applied to construct specific, stable, biocompatible, and functional nanodevices. DNA nanodevices have made greater contributions in a plethora of fields. In this review, we discuss the recent progress of DNA nanodevices in molecular detection and analysis. Meanwhile, we prospect the development of various DNA devices in biological analysis, clinical diagnosis and biomedical research.
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Affiliation(s)
- Sinuo Yu
- Center for Molecular Recognition and Biosensing, School of Life Sciences, Shanghai University, Shanghai 200444, P. R. China.
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75
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Wiltschi B, Cernava T, Dennig A, Galindo Casas M, Geier M, Gruber S, Haberbauer M, Heidinger P, Herrero Acero E, Kratzer R, Luley-Goedl C, Müller CA, Pitzer J, Ribitsch D, Sauer M, Schmölzer K, Schnitzhofer W, Sensen CW, Soh J, Steiner K, Winkler CK, Winkler M, Wriessnegger T. Enzymes revolutionize the bioproduction of value-added compounds: From enzyme discovery to special applications. Biotechnol Adv 2020; 40:107520. [DOI: 10.1016/j.biotechadv.2020.107520] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 10/18/2019] [Accepted: 01/13/2020] [Indexed: 12/11/2022]
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76
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Synthesizing Chiral Drug Intermediates by Biocatalysis. Appl Biochem Biotechnol 2020; 192:146-179. [DOI: 10.1007/s12010-020-03272-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 02/13/2020] [Indexed: 01/16/2023]
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77
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Nakano Y, Black MJ, Meichan AJ, Sandoval BA, Chung MM, Biegasiewicz KF, Zhu T, Hyster TK. Photoenzymatic Hydrogenation of Heteroaromatic Olefins Using 'Ene'-Reductases with Photoredox Catalysts. Angew Chem Int Ed Engl 2020; 59:10484-10488. [PMID: 32181943 DOI: 10.1002/anie.202003125] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Indexed: 12/20/2022]
Abstract
Flavin-dependent 'ene'-reductases (EREDs) are highly selective catalysts for the asymmetric reduction of activated alkenes. This function is, however, limited to enones, enoates, and nitroalkenes using the native hydride transfer mechanism. Here we demonstrate that EREDs can reduce vinyl pyridines when irradiated with visible light in the presence of a photoredox catalyst. Experimental evidence suggests the reaction proceeds via a radical mechanism where the vinyl pyridine is reduced to the corresponding neutral benzylic radical in solution. DFT calculations reveal this radical to be "dynamically stable", suggesting it is sufficiently long-lived to diffuse into the enzyme active site for stereoselective hydrogen atom transfer. This reduction mechanism is distinct from the native one, highlighting the opportunity to expand the synthetic capabilities of existing enzyme platforms by exploiting new mechanistic models.
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Affiliation(s)
- Yuji Nakano
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA.,Present address: Monash Institute of Pharmaceutical Science, Monash University, Parkville, Victoria, 3052, Australia
| | - Michael J Black
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA
| | - Andrew J Meichan
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA
| | | | - Megan M Chung
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA
| | - Kyle F Biegasiewicz
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA.,Present address: School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA
| | - Tianyu Zhu
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | - Todd K Hyster
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA
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78
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Nakano Y, Black MJ, Meichan AJ, Sandoval BA, Chung MM, Biegasiewicz KF, Zhu T, Hyster TK. Photoenzymatic Hydrogenation of Heteroaromatic Olefins Using ‘Ene’‐Reductases with Photoredox Catalysts. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202003125] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Yuji Nakano
- Department of Chemistry Princeton University Princeton NJ 08544 USA
- Present address: Monash Institute of Pharmaceutical Science Monash University Parkville Victoria 3052 Australia
| | - Michael J. Black
- Department of Chemistry Princeton University Princeton NJ 08544 USA
| | | | | | - Megan M. Chung
- Department of Chemistry Princeton University Princeton NJ 08544 USA
| | - Kyle F. Biegasiewicz
- Department of Chemistry Princeton University Princeton NJ 08544 USA
- Present address: School of Molecular Sciences Arizona State University Tempe AZ 85287 USA
| | - Tianyu Zhu
- Division of Chemistry and Chemical Engineering California Institute of Technology Pasadena CA 91125 USA
| | - Todd K. Hyster
- Department of Chemistry Princeton University Princeton NJ 08544 USA
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79
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Baumer B, Classen T, Pohl M, Pietruszka J. Efficient Nicotinamide Adenine Dinucleotide Phosphate [NADP(H)] Recycling in Closed‐Loop Continuous Flow Biocatalysis. Adv Synth Catal 2020. [DOI: 10.1002/adsc.202000058] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Benedikt Baumer
- Institut für Bioorganische Chemie der Heinrich-Heine-Universität Düsseldorf imForschungszentrum Jülich Stetternicher Forst, Geb. 15.8 D-52426 Jülich Germany
| | - Thomas Classen
- Institut für Bio- und Geowissenschaften (IBG-1: Biotechnologie)Forschungszentrum Jülich GmbH D-52456 Jülich Germany
| | - Martina Pohl
- Institut für Bio- und Geowissenschaften (IBG-1: Biotechnologie)Forschungszentrum Jülich GmbH D-52456 Jülich Germany
| | - Jörg Pietruszka
- Institut für Bioorganische Chemie der Heinrich-Heine-Universität Düsseldorf imForschungszentrum Jülich Stetternicher Forst, Geb. 15.8 D-52426 Jülich Germany
- Institut für Bio- und Geowissenschaften (IBG-1: Biotechnologie)Forschungszentrum Jülich GmbH D-52456 Jülich Germany
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80
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Pérez‐Venegas M, Rodríguez‐Treviño AM, Juaristi E. Dual Mechanoenzymatic Kinetic Resolution of (±)‐Ketorolac. ChemCatChem 2020. [DOI: 10.1002/cctc.201902292] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Mario Pérez‐Venegas
- Department of ChemistryCentro de Investigación y de Estudios Avanzados Av. IPN 2508 Ciudad de México 07360 Mexico
| | | | - Eusebio Juaristi
- Department of ChemistryCentro de Investigación y de Estudios Avanzados Av. IPN 2508 Ciudad de México 07360 Mexico
- El Colegio Nacional Donceles 104 Ciudad de México 06020 Mexico
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81
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82
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Jiang W, Wang Y. Improving Catalytic Efficiency and Changing Substrate Spectrum for Asymmetric Biocatalytic Reductive Amination. J Microbiol Biotechnol 2020; 30:146-154. [PMID: 31546300 PMCID: PMC9728165 DOI: 10.4014/jmb.1907.07015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
With the advantages of biocatalytic method, enzymes have been excavated for the synthesis of chiral amino acids by the reductive amination of ketones, offering a promising way of producing pharmaceutical intermediates. In this work, a robust phenylalanine dehydrogenase (PheDH) with wide substrate spectrum and high catalytic efficiency was constructed through rational design and active-site-targeted, site-specific mutagenesis by using the parent enzyme from Bacillus halodurans. Active sites with bonding substrate and amino acid residues surrounding the substrate binding pocket, 49L-50G-51G, 74M,77K, 122G-123T-124D-125M, 275N, 305L and 308V of the PheDH, were identified. Noticeably, the new mutant PheDH (E113D-N276L) showed approximately 6.06-fold increment of kcat/Km in the oxidative deamination and more than 1.58-fold in the reductive amination compared to that of the wide type. Meanwhile, the PheDHs exhibit high capacity of accepting benzylic and aliphatic ketone substrates. The broad specificity, high catalytic efficiency and selectivity, along with excellent thermal stability, render these broad-spectrum enzymes ideal targets for further development with potential diagnostic reagent and pharmaceutical compounds applications.
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Affiliation(s)
- Wei Jiang
- Department of Bioengineering and Biotechnology, College of Chemical Engineering, Huaqiao University, Xiamen, Fujian, 3602, P.R. China,Corresponding author Phone: +86-0592-616-2305 Fax: +86-0592-616-2305 E-mail: ;
| | - Yali Wang
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
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83
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Weltz JS, Kienle DF, Schwartz DK, Kaar JL. Reduced Enzyme Dynamics upon Multipoint Covalent Immobilization Leads to Stability-Activity Trade-off. J Am Chem Soc 2020; 142:3463-3471. [DOI: 10.1021/jacs.9b11707] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- James S. Weltz
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80309, United States
| | - Daniel F. Kienle
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80309, United States
| | - Daniel K. Schwartz
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80309, United States
| | - Joel L. Kaar
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80309, United States
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84
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Şahin E. Synthesis of enantiopure (
S
)‐6‐chlorochroman‐4‐ol using whole‐cell
Lactobacillus paracasei
biotransformation. Chirality 2020; 32:400-406. [DOI: 10.1002/chir.23177] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 01/09/2020] [Accepted: 01/09/2020] [Indexed: 12/21/2022]
Affiliation(s)
- Engin Şahin
- Faculty of Health Sciencies, Department of Nutrition and DieteticsBayburt University Bayburt Turkey
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85
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Rigorous Model-Based Design and Experimental Verification of Enzyme-Catalyzed Carboligation under Enzyme Inactivation. Catalysts 2020. [DOI: 10.3390/catal10010096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Enzyme catalyzed reactions are complex reactions due to the interplay of the enzyme, the reactants, and the operating conditions. To handle this complexity systematically and make use of a design space without technical restrictions, we apply the model based approach of elementary process functions (EPF) for selecting the best process design for enzyme catalysis problems. As a representative case study, we consider the carboligation of propanal and benzaldehyde catalyzed by benzaldehyde lyase from Pseudomonas fluorescens (PfBAL) to produce (R)-2-hydroxy-1-phenylbutan-1-one, because of the substrate dependent reaction rates and the challenging substrate dependent PfBAL inactivation. The apparatus independent EPF concept optimizes the material fluxes influencing the enzyme catalyzed reaction for the given process intensification scenarios. The final product concentration is improved by 13% with the optimized feeding rates, and the optimization results are verified experimentally. In general, the rigorous model driven approach could lead to selecting the best existing reactor, designing novel reactors for enzyme catalysis, and combining protein engineering and process systems engineering concepts.
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86
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Frederick J, Hennessy F, Horn U, de la Torre Cortés P, van den Broek M, Strych U, Willson R, Hefer CA, Daran JMG, Sewell T, Otten LG, Brady D. The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870. BMC Genomics 2020; 21:3. [PMID: 31898479 PMCID: PMC6941271 DOI: 10.1186/s12864-019-6405-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 12/16/2019] [Indexed: 12/21/2022] Open
Abstract
BACKGROUND Rhodococci are industrially important soil-dwelling Gram-positive bacteria that are well known for both nitrile hydrolysis and oxidative metabolism of aromatics. Rhodococcus rhodochrous ATCC BAA-870 is capable of metabolising a wide range of aliphatic and aromatic nitriles and amides. The genome of the organism was sequenced and analysed in order to better understand this whole cell biocatalyst. RESULTS The genome of R. rhodochrous ATCC BAA-870 is the first Rhodococcus genome fully sequenced using Nanopore sequencing. The circular genome contains 5.9 megabase pairs (Mbp) and includes a 0.53 Mbp linear plasmid, that together encode 7548 predicted protein sequences according to BASys annotation, and 5535 predicted protein sequences according to RAST annotation. The genome contains numerous oxidoreductases, 15 identified antibiotic and secondary metabolite gene clusters, several terpene and nonribosomal peptide synthetase clusters, as well as 6 putative clusters of unknown type. The 0.53 Mbp plasmid encodes 677 predicted genes and contains the nitrile converting gene cluster, including a nitrilase, a low molecular weight nitrile hydratase, and an enantioselective amidase. Although there are fewer biotechnologically relevant enzymes compared to those found in rhodococci with larger genomes, such as the well-known Rhodococcus jostii RHA1, the abundance of transporters in combination with the myriad of enzymes found in strain BAA-870 might make it more suitable for use in industrially relevant processes than other rhodococci. CONCLUSIONS The sequence and comprehensive description of the R. rhodochrous ATCC BAA-870 genome will facilitate the additional exploitation of rhodococci for biotechnological applications, as well as enable further characterisation of this model organism. The genome encodes a wide range of enzymes, many with unknown substrate specificities supporting potential applications in biotechnology, including nitrilases, nitrile hydratase, monooxygenases, cytochrome P450s, reductases, proteases, lipases, and transaminases.
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Affiliation(s)
- Joni Frederick
- Protein Technologies, CSIR Biosciences, Meiring Naude Road, Brummeria, Pretoria, South Africa
- Electron Microscope Unit, University of Cape Town, Rondebosch, 7701 South Africa
- Present Address: LadHyx, UMR CNRS 7646, École Polytechnique, 91128 Palaiseau, France
| | - Fritha Hennessy
- Protein Technologies, CSIR Biosciences, Meiring Naude Road, Brummeria, Pretoria, South Africa
| | - Uli Horn
- Meraka, CSIR, Meiring Naude Road, Brummeria, 0091 South Africa
| | - Pilar de la Torre Cortés
- Industrial Microbiology, Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Marcel van den Broek
- Industrial Microbiology, Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Ulrich Strych
- Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204 USA
- Present Address: Department of Pediatrics, Section of Tropical Medicine, Baylor College of Medicine, 1102 Bates Avenue, Houston, TX 77030 USA
| | - Richard Willson
- Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204 USA
- Chemical and Biomolecular Engineering, University of Houston, 4800 Calhoun Road, Houston, TX 77204 USA
| | - Charles A. Hefer
- Bioinformatics and Computational Biology Unit, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, 0002 South Africa
- Present Address: AgResearch Limited, Lincoln Research Centre, Private Bag 4749, Christchurch, 8140 New Zealand
| | - Jean-Marc G. Daran
- Industrial Microbiology, Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Trevor Sewell
- Electron Microscope Unit, University of Cape Town, Rondebosch, 7701 South Africa
| | - Linda G. Otten
- Biocatalysis, Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Dean Brady
- Protein Technologies, CSIR Biosciences, Meiring Naude Road, Brummeria, Pretoria, South Africa
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, PO, Wits, 2050 South Africa
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87
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Moni L, Banfi L, Cartagenova D, Cavalli A, Lambruschini C, Martino E, Orru RVA, Ruijter E, Saya JM, Sgrignani J, Riva R. Zinc( ii)-mediated diastereoselective Passerini reactions of biocatalytically desymmetrised renewable inputs. Org Chem Front 2020. [DOI: 10.1039/c9qo00773c] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
A chiral aldehyde, obtained in both enantiomeric forms from renewable 2,5-Bis(hydroxymethyl)tetrahydrofuran by a chemoenzymatic procedure, was submitted to a modified diastereoselective Passerini reaction employing zinc dicarboxylates.
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Affiliation(s)
- Lisa Moni
- Department of Chemistry and Industrial Chemistry
- Università di Genova
- Italy
| | - Luca Banfi
- Department of Chemistry and Industrial Chemistry
- Università di Genova
- Italy
| | | | - Andrea Cavalli
- Institute for Research in Biomedicine (IRB)
- Università della Svizzera Italiana (USI)
- Bellinzona
- Switzerland
- Swiss Institute of Bioinformatics
| | | | - Elisa Martino
- Department of Chemistry and Industrial Chemistry
- Università di Genova
- Italy
| | - Romano V. A. Orru
- Department of Chemistry & Pharmaceutical Sciences
- Vrije Universiteit Amsterdam
- Netherlands
| | - Eelco Ruijter
- Department of Chemistry & Pharmaceutical Sciences
- Vrije Universiteit Amsterdam
- Netherlands
| | - Jordy M. Saya
- Department of Chemistry & Pharmaceutical Sciences
- Vrije Universiteit Amsterdam
- Netherlands
| | - Jacopo Sgrignani
- Institute for Research in Biomedicine (IRB)
- Università della Svizzera Italiana (USI)
- Bellinzona
- Switzerland
- Swiss Institute of Bioinformatics
| | - Renata Riva
- Department of Pharmacy
- Università di Genova
- Italy
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88
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Kornecki JF, Carballares D, Tardioli PW, Rodrigues RC, Berenguer-Murcia Á, Alcántara AR, Fernandez-Lafuente R. Enzyme production ofd-gluconic acid and glucose oxidase: successful tales of cascade reactions. Catal Sci Technol 2020. [DOI: 10.1039/d0cy00819b] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
This review mainly focuses on the use of glucose oxidase in the production ofd-gluconic acid, which is a reactant of undoubtable interest in different industrial areas. As example of diverse enzymatic cascade reactions.
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Affiliation(s)
- Jakub F. Kornecki
- Departamento de Biocatálisis
- ICP-CSIC
- Campus UAM-CSIC
- 28049 Madrid
- Spain
| | - Diego Carballares
- Departamento de Biocatálisis
- ICP-CSIC
- Campus UAM-CSIC
- 28049 Madrid
- Spain
| | - Paulo W. Tardioli
- Postgraduate Program in Chemical Engineering (PPGEQ)
- Department of Chemical Engineering
- Federal University of São Carlos
- 13565-905 São Carlos
- Brazil
| | - Rafael C. Rodrigues
- Biocatalysis and Enzyme Technology Lab
- Institute of Food Science and Technology
- Federal University of Rio Grande do Sul
- Porto Alegre
- Brazil
| | - Ángel Berenguer-Murcia
- Departamento de Química Inorgánica e Instituto Universitario de Materiales
- Universidad de Alicante
- Alicante 03080
- Spain
| | - Andrés R. Alcántara
- Departamento de Química en Ciencias Farmacéuticas
- Facultad de Farmacia
- Universidad Complutense de Madrid
- 28040-Madrid
- Spain
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89
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Carucci C, Raccis F, Salis A, Magner E. Specific ion effects on the enzymatic activity of alcohol dehydrogenase fromSaccharomyces cerevisiae. Phys Chem Chem Phys 2020; 22:6749-6754. [DOI: 10.1039/c9cp06800g] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The specific activity andVmax, but notKm, of alcohol dehydrogenase fromSaccharomyces cerevisiaeare ion specific.
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Affiliation(s)
- Cristina Carucci
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
| | - Francesco Raccis
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
| | - Andrea Salis
- Department of Chemical and Geological Sciences
- University of Cagliari
- CSGI & CNBS
- Cittadella Universitaria
- 09042 Monserrato (CA)
| | - Edmond Magner
- Department of Chemical Sciences
- Synthesis and Solid State Pharmaceutical Centre (SSPC) and Bernal Institute
- University of Limerick
- Limerick
- Ireland
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90
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Woodley JM. Advances in biological conversion technologies: new opportunities for reaction engineering. REACT CHEM ENG 2020. [DOI: 10.1039/c9re00422j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Reaction engineering needs to embrace biological conversion technologies, on the road to identify more sustainable routes for chemical manufacture.
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Affiliation(s)
- John M. Woodley
- Department of Chemical and Biochemical Engineering
- Technical University of Denmark (DTU)
- DK-2800 Kgs. Lyngby
- Denmark
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91
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Şahin E. Production of enantiopure chiral aryl heteroaryl carbinols using whole‐cell Lactobacillus paracasei biotransformation. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2019.1707226] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Engin Şahin
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
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92
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Şahin E. First green synthesis of (R)-2-methyl-1-phenylpropan-1-ol using whole-cell Lactobacillus paracasei BD101 biotransformation. BIOCATAL BIOTRANSFOR 2019. [DOI: 10.1080/10242422.2019.1698554] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Engin Şahin
- Faculty of Engineering, Department of Food Engineering, Bayburt University, Bayburt, Turkey
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93
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Genipin as An Emergent Tool in the Design of Biocatalysts: Mechanism of Reaction and Applications. Catalysts 2019. [DOI: 10.3390/catal9121035] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Genipin is a reagent isolated from the Gardenia jasminoides fruit extract, and whose low toxicity and good crosslinking properties have converted it into a reactive whose popularity is increasing by the day. These properties have made it widely used in many medical applications, mainly in the production of chitosan materials (crosslinked by this reactive), biological scaffolds for tissue engineering, and nanoparticles of chitosan and nanogels of proteins for controlled drug delivery, the genipin crosslinking being a key point to strengthen the stability of these materials. This review is focused on the mechanism of reaction of this reagent and its use in the design of biocatalysts, where genipin plays a double role, as a support activating agent and as inter- or intramolecular crosslinker. Its low toxicity makes this compound an ideal alterative to glutaraldehyde in these processes. Moreover, in some cases the features of the biocatalysts prepared using genipin surpassed those of the biocatalysts prepared using other standard crosslinkers, even disregarding toxicity. In this way, genipin is a very promising reagent in the design of biocatalysts.
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94
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Rodrigues CJC, Sanches JM, de Carvalho CCCR. Determining transaminase activity in bacterial libraries by time-lapse imaging. Chem Commun (Camb) 2019; 55:13538-13541. [PMID: 31647085 DOI: 10.1039/c9cc07507k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Transaminase activity was determined by time-lapse imaging using a colourimetric reaction and image analysis. A correlation between the benzaldehyde conversion and relative luminance was determined, allowing the identification of the most promising biocatalysts, the determination of kinetic parameters, and the assessment of the effect of the substrate concentration on activity.
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Affiliation(s)
- Carlos J C Rodrigues
- iBB-Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal.
| | - João M Sanches
- Institute for Systems and Robotics (ISR/IST), LARSyS, Bioengineering Department, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Carla C C R de Carvalho
- iBB-Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal.
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95
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Developing a Novel Enzyme Immobilization Process by Activation of Epoxy Carriers with Glucosamine for Pharmaceutical and Food Applications. Catalysts 2019. [DOI: 10.3390/catal9100843] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
In this paper, we describe the development of an efficient enzyme immobilization procedure based on the activation of epoxy carriers with glucosamine. This approach aims at both creating a hydrophilic microenvironment surrounding the biocatalyst and introducing a spacer bearing an aldehyde group for covalent attachment. First, the immobilization study was carried out using penicillin G acylase (PGA) from Escherichia coli as a model enzyme. PGA immobilized on glucosamine activated supports has been compared with enzyme derivatives obtained by direct immobilization on the same non-modified carriers, in the synthesis of different 3′-functionalized cephalosporins. The derivatives prepared by immobilization of PGA on the glucosamine-carriers performed better than those prepared using the unmodified carriers (i.e., 90% versus 79% cefazolin conversion). The same immobilization method has been then applied to the immobilization of two other hydrolases (neutral protease from Bacillus subtilis, PN, and bromelain from pineapple stem, BR) and one transferase (γ-glutamyl transpeptidase from Bacillus subtilis, GGT). Immobilized PN and BR have been exploited in the synthesis of modified nucleosides and in a bench-scale packed-bed reactor for the protein stabilization of a Sauvignon blanc wine, respectively. In addition, in these cases, the new enzyme derivatives provided improved results compared to those previously described.
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96
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Enantioselective Resolution of (±)-1-Phenylethyl Acetate by Using the Whole Cells of Deep-sea Bacterium Bacillus sp. DL-2. Chem Res Chin Univ 2019. [DOI: 10.1007/s40242-019-9126-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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97
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Sharma SK, Micic M, Li S, Hoar B, Paudyal S, Zahran EM, Leblanc RM. Conjugation of Carbon Dots with β-Galactosidase Enzyme: Surface Chemistry and Use in Biosensing. Molecules 2019; 24:molecules24183275. [PMID: 31505751 PMCID: PMC6766898 DOI: 10.3390/molecules24183275] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Revised: 09/07/2019] [Accepted: 09/08/2019] [Indexed: 12/13/2022] Open
Abstract
Nanoparticles have been conjugated to biological systems for numerous applications such as self-assembly, sensing, imaging, and therapy. Development of more reliable and robust biosensors that exhibit high response rate, increased detection limit, and enhanced useful lifetime is in high demand. We have developed a sensing platform by the conjugation of β-galactosidase, a crucial enzyme, with lab-synthesized gel-like carbon dots (CDs) which have high luminescence, photostability, and easy surface functionalization. We found that the conjugated enzyme exhibited higher stability towards temperature and pH changes in comparison to the native enzyme. This enriched property of the enzyme was distinctly used to develop a stable, reliable, robust biosensor. The detection limit of the biosensor was found to be 2.9 × 10−4 M, whereas its sensitivity was 0.81 µA·mmol−1·cm−2. Further, we used the Langmuir monolayer technique to understand the surface properties of the conjugated enzyme. It was found that the conjugate was highly stable at the air/subphase interface which additionally reinforces the suitability of the use of the conjugated enzyme for the biosensing applications.
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Affiliation(s)
- Shiv K Sharma
- Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Miami, FL 33146, USA.
| | - Miodrag Micic
- MP Biomedicals LLC, 3 Hutton Center, Santa Ana, CA 92707, USA.
- Department of Engineering Design Technology, Cerritos College, 11110 Alondra Boulevard, Norwalk, CA 90650, USA.
| | - Shanghao Li
- MP Biomedicals LLC, 3 Hutton Center, Santa Ana, CA 92707, USA.
| | - Benjamin Hoar
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.
| | - Suraj Paudyal
- Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Miami, FL 33146, USA.
| | - Elsayed M Zahran
- Department of Chemistry, Ball State University, Muncie, IN 47306, USA.
| | - Roger M Leblanc
- Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Miami, FL 33146, USA.
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98
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Dal Magro L, de Moura KS, Backes BE, de Menezes EW, Benvenutti EV, Nicolodi S, Klein MP, Fernandez-Lafuente R, Rodrigues RC. Immobilization of pectinase on chitosan-magnetic particles: Influence of particle preparation protocol on enzyme properties for fruit juice clarification. ACTA ACUST UNITED AC 2019; 24:e00373. [PMID: 31516853 PMCID: PMC6728273 DOI: 10.1016/j.btre.2019.e00373] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 08/19/2019] [Accepted: 08/22/2019] [Indexed: 12/16/2022]
Abstract
Magnetic-chitosan particles were prepared following three different protocols enabling the preparation of particles with different sizes - nano (Nano-CMag, Micro (Micro-CMag) and Macro (Macro-CMag) - and used for pectinase immobilization and clarification of grape, apple and orange juices. The particle size had a great effect in the kinetic parameters, Nano-CMag biocatalyst presented the highest Vmax value (78.95 mg. min-1), followed by Micro-CMag and Macro-CMag, with Vmax of 57.20 mg.min-1 and 46.03 mg.min-1, respectively. However, the highest thermal stability was achieved using Macro-CMag, that was 8 and 3-times more stable than Nano-CMag and Micro-CMag biocatalysts, respectively. Pectinase immobilized on Macro-CMag kept 85% of its initial activity after 25 batch cycles in orange juice clarification. These results suggested that the chitosan magnetic biocatalysts presented great potential application as clarifying catalysts for the fruit juice industry and the great importance of the chitosan particles preparation on the final biocatalyst properties.
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Affiliation(s)
- Lucas Dal Magro
- Biotechnology, Bioprocess and Biocatalysis Group, Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Av. Bento Gonçalves, 9500, P.O. Box 15090, ZC 91501-970, Porto Alegre, RS, Brazil
- Department of Biocatalysis, ICP-CSIC, Campus UAM-CSIC, Cantoblanco, ZC 28049, Madrid, Spain
| | - Kelly Silva de Moura
- Biotechnology, Bioprocess and Biocatalysis Group, Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Av. Bento Gonçalves, 9500, P.O. Box 15090, ZC 91501-970, Porto Alegre, RS, Brazil
| | - Betina Elys Backes
- Biotechnology, Bioprocess and Biocatalysis Group, Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Av. Bento Gonçalves, 9500, P.O. Box 15090, ZC 91501-970, Porto Alegre, RS, Brazil
| | - Eliana Weber de Menezes
- Laboratory of Solids and Surfaces, Institute of Chemistry, UFRGS, P.O. Box 15003, ZC 91501-970, Porto Alegre, RS, Brazil
| | - Edilson Valmir Benvenutti
- Laboratory of Solids and Surfaces, Institute of Chemistry, UFRGS, P.O. Box 15003, ZC 91501-970, Porto Alegre, RS, Brazil
| | - Sabrina Nicolodi
- Magnetism Laboratory, Institute of Physics, Federal University of Rio Grande do Sul, P.O. Box 15051, ZC 91501-970, Porto Alegre, RS, Brazil
| | - Manuela P. Klein
- Department of Nutrition, Federal University of Health Sciences of Porto Alegre (UFCSPA), ZC 90050-170, Porto Alegre, RS, Brazil
| | - Roberto Fernandez-Lafuente
- Department of Biocatalysis, ICP-CSIC, Campus UAM-CSIC, Cantoblanco, ZC 28049, Madrid, Spain
- Corresponding authors.
| | - Rafael C. Rodrigues
- Biotechnology, Bioprocess and Biocatalysis Group, Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Av. Bento Gonçalves, 9500, P.O. Box 15090, ZC 91501-970, Porto Alegre, RS, Brazil
- Corresponding authors.
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99
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Şahin E. Green synthesis of enantiopure (S)-1-(benzofuran-2-yl)ethanol by whole-cell biocatalyst. Chirality 2019; 31:892-897. [PMID: 31423658 DOI: 10.1002/chir.23123] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 07/18/2019] [Accepted: 08/04/2019] [Indexed: 12/31/2022]
Abstract
Optically active aromatic alcohols are valuable chiral building blocks of many natural products and chiral drugs. Lactobacillus paracasei BD87E6, which was isolated from a cereal-based fermented beverage, was shown as a biocatalyst for the bioreduction of 1-(benzofuran-2-yl) ethanone to (S)-1-(benzofuran-2-yl) ethanol with highly stereoselectivity. The bioreduction conditions were optimized using L. paracasei BD87E6 to obtain high enantiomeric excess (ee) and conversion. After optimization of the bioreduction conditions, it was shown that the bioreduction of 1-(benzofuran-2-yl)ethanone was performed in mild reaction conditions. The asymmetric bioreduction of the 1-(benzofuran-2-yl)ethanone had reached 92% yield with ee of higher than 99.9% at 6.73 g of substrate. Our study gave the first example for enantiopure production of (S)-1-(benzofuran-2-yl)ethanol by a biological green method. This process is also scalable and has potential in application. In this study, a basic and novel whole-cell mediated biocatalytic method was performed for the enantiopure production of (S)-1-(benzofuran-2-yl)ethanol in the aqueous medium, which empowered the synthesis of a precious chiral intermediary process to be converted into a sophisticated molecule for drug production.
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Affiliation(s)
- Engin Şahin
- Faculty of Health Sciencies, Department of Nutrition and Dietetics, Bayburt University, Bayburt, Turkey
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100
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Todhanakasem T, Salangsing OL, Koomphongse P, Kaewket S, Kanokratana P, Champreda V. Zymomonas mobilis Biofilm Reactor for Ethanol Production Using Rice Straw Hydrolysate Under Continuous and Repeated Batch Processes. Front Microbiol 2019; 10:1777. [PMID: 31440218 PMCID: PMC6693309 DOI: 10.3389/fmicb.2019.01777] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 07/18/2019] [Indexed: 11/13/2022] Open
Abstract
Plastic composited corn silk was developed as a biotic/abiotic carrier for Zymomonas mobilis biofilm formation for the purpose of ethanol production. Furthermore, we explored the use of rice straw hydrolysate as substrate in both multistage continuous culture and repeated batch processes and compared the ethanol production efficiency by two strains of Z. mobilis. Biofilm formed by bacterial strains Z. mobilis ZM4 and TISTR551 were detected, and its proficiencies were compared under various conditions by scanning electron microscopy (SEM) and crystal violet assays. The greatest biofilm formed by both strains was found on day five after the inoculation. Z. mobilis strain ZM4 grown in repeated batch biofilm reactors produced higher yields of ethanol than TISTR551 grown under the same conditions, while TISTR551 produced higher yields of ethanol in the multistage continuous process. The yields were highly maintained, with no significant differences (p < 0.05) among the three consecutive repeated batches. These experiments highlight exciting uses for agricultural byproducts in the production of ethanol using Z. mobilis biofilm reactors.
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Affiliation(s)
- Tatsaporn Todhanakasem
- Department of Agro-Industry, Faculty of Biotechnology, Assumption University, Bangkok, Thailand
| | - O-Lan Salangsing
- Department of Agro-Industry, Faculty of Biotechnology, Assumption University, Bangkok, Thailand
| | - Piyawit Koomphongse
- National Metal and Materials Technology Center (MTEC), Klong Luang, Thailand
| | - Sanya Kaewket
- National Metal and Materials Technology Center (MTEC), Klong Luang, Thailand
| | - Pattanop Kanokratana
- National Center for Genetic Engineering and Biotechnology (BIOTEC), Klong Luang, Thailand
| | - Verawat Champreda
- National Center for Genetic Engineering and Biotechnology (BIOTEC), Klong Luang, Thailand
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