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For: Hamilton KS, Ellison MJ, Barber KR, Williams RS, Huzil JT, McKenna S, Ptak C, Glover M, Shaw GS. Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail. Structure 2001;9:897-904. [PMID: 11591345 DOI: 10.1016/s0969-2126(01)00657-8] [Citation(s) in RCA: 148] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Number Cited by Other Article(s)
51
Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase. Biochem J 2013;450:629-38. [PMID: 23259674 DOI: 10.1042/bj20121702] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
52
Soss SE, Klevit RE, Chazin WJ. Activation of UbcH5c~Ub is the result of a shift in interdomain motions of the conjugate bound to U-box E3 ligase E4B. Biochemistry 2013;52:2991-9. [PMID: 23550736 DOI: 10.1021/bi3015949] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
53
Ji AX, Privé GG. Crystal structure of KLHL3 in complex with Cullin3. PLoS One 2013;8:e60445. [PMID: 23573258 PMCID: PMC3616122 DOI: 10.1371/journal.pone.0060445] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2012] [Accepted: 02/25/2013] [Indexed: 12/30/2022]  Open
54
Olsen SK, Lima CD. Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol Cell 2013;49:884-96. [PMID: 23416107 DOI: 10.1016/j.molcel.2013.01.013] [Citation(s) in RCA: 124] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2012] [Revised: 12/20/2012] [Accepted: 01/08/2013] [Indexed: 12/17/2022]
55
Stein ML, Groll M. Applied techniques for mining natural proteasome inhibitors. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2013;1843:26-38. [PMID: 23360979 DOI: 10.1016/j.bbamcr.2013.01.017] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Accepted: 01/14/2013] [Indexed: 11/17/2022]
56
Sanders MA, Brahemi G, Nangia-Makker P, Balan V, Morelli M, Kothayer H, Westwell AD, Shekhar MPV. Novel inhibitors of Rad6 ubiquitin conjugating enzyme: design, synthesis, identification, and functional characterization. Mol Cancer Ther 2013;12:373-83. [PMID: 23339190 DOI: 10.1158/1535-7163.mct-12-0793] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
57
Zhao B, Bhuripanyo K, Schneider J, Zhang K, Schindelin H, Boone D, Yin J. Specificity of the E1-E2-E3 enzymatic cascade for ubiquitin C-terminal sequences identified by phage display. ACS Chem Biol 2012;7:2027-35. [PMID: 23003343 DOI: 10.1021/cb300339p] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
58
Sadanandom A, Bailey M, Ewan R, Lee J, Nelis S. The ubiquitin-proteasome system: central modifier of plant signalling. THE NEW PHYTOLOGIST 2012;196:13-28. [PMID: 22897362 DOI: 10.1111/j.1469-8137.2012.04266.x] [Citation(s) in RCA: 270] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Accepted: 07/05/2012] [Indexed: 05/19/2023]
59
Lima CD, Schulman BA. Structural biology: A protein engagement RING. Nature 2012;489:43-4. [PMID: 22955611 PMCID: PMC3665766 DOI: 10.1038/489043a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
60
Plechanovová A, Jaffray EG, Tatham MH, Naismith JH, Hay RT. Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis. Nature 2012;489:115-20. [PMID: 22842904 PMCID: PMC3442243 DOI: 10.1038/nature11376] [Citation(s) in RCA: 425] [Impact Index Per Article: 32.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2012] [Accepted: 07/10/2012] [Indexed: 12/27/2022]
61
Architecture of the catalytic HPN motif is conserved in all E2 conjugating enzymes. Biochem J 2012;445:167-74. [PMID: 22563859 DOI: 10.1042/bj20120504] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
62
Dou H, Buetow L, Sibbet GJ, Cameron K, Huang DT. BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer. Nat Struct Mol Biol 2012;19:876-83. [PMID: 22902369 PMCID: PMC3880866 DOI: 10.1038/nsmb.2379] [Citation(s) in RCA: 269] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2012] [Accepted: 08/08/2012] [Indexed: 12/13/2022]
63
Structure of an E3:E2~Ub complex reveals an allosteric mechanism shared among RING/U-box ligases. Mol Cell 2012;47:933-42. [PMID: 22885007 DOI: 10.1016/j.molcel.2012.07.001] [Citation(s) in RCA: 258] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2012] [Revised: 06/18/2012] [Accepted: 07/05/2012] [Indexed: 02/04/2023]
64
Papaleo E, Casiraghi N, Arrigoni A, Vanoni M, Coccetti P, De Gioia L. Loop 7 of E2 enzymes: an ancestral conserved functional motif involved in the E2-mediated steps of the ubiquitination cascade. PLoS One 2012;7:e40786. [PMID: 22815819 PMCID: PMC3399832 DOI: 10.1371/journal.pone.0040786] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2012] [Accepted: 06/12/2012] [Indexed: 12/31/2022]  Open
65
Campbell SJ, Edwards RA, Leung CCY, Neculai D, Hodge CD, Dhe-Paganon S, Glover JNM. Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation. J Biol Chem 2012;287:23900-10. [PMID: 22589545 DOI: 10.1074/jbc.m112.359653] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
66
Page RC, Pruneda JN, Amick J, Klevit RE, Misra S. Structural insights into the conformation and oligomerization of E2~ubiquitin conjugates. Biochemistry 2012;51:4175-87. [PMID: 22551455 DOI: 10.1021/bi300058m] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
67
Skibinski GA, Boyd L. Ubiquitination is involved in secondary growth, not initial formation of polyglutamine protein aggregates in C. elegans. BMC Cell Biol 2012;13:10. [PMID: 22494772 PMCID: PMC3368771 DOI: 10.1186/1471-2121-13-10] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2011] [Accepted: 04/11/2012] [Indexed: 11/13/2022]  Open
68
Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S. A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics 2012;11:329-41. [PMID: 22496338 DOI: 10.1074/mcp.o111.013706] [Citation(s) in RCA: 91] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
69
Juang YC, Landry MC, Sanches M, Vittal V, Leung CCY, Ceccarelli DF, Mateo ARF, Pruneda JN, Mao DYL, Szilard RK, Orlicky S, Munro M, Brzovic PS, Klevit RE, Sicheri F, Durocher D. OTUB1 co-opts Lys48-linked ubiquitin recognition to suppress E2 enzyme function. Mol Cell 2012;45:384-97. [PMID: 22325355 DOI: 10.1016/j.molcel.2012.01.011] [Citation(s) in RCA: 168] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2011] [Revised: 01/19/2012] [Accepted: 01/20/2012] [Indexed: 12/16/2022]
70
Pasten C, Ortiz-Pineda PA, García-Arrarás JE. Ubiquitin-proteasome system components are upregulated during intestinal regeneration. Genesis 2012;50:350-65. [PMID: 21913312 DOI: 10.1002/dvg.20803] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Revised: 08/12/2011] [Accepted: 09/06/2011] [Indexed: 11/06/2022]
71
Hänzelmann P, Schäfer A, Völler D, Schindelin H. Structural insights into functional modes of proteins involved in ubiquitin family pathways. Methods Mol Biol 2012;832:547-76. [PMID: 22350912 DOI: 10.1007/978-1-61779-474-2_39] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
72
RINGs hold the key to ubiquitin transfer. Trends Biochem Sci 2011;37:58-65. [PMID: 22154517 DOI: 10.1016/j.tibs.2011.11.001] [Citation(s) in RCA: 152] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2011] [Revised: 10/26/2011] [Accepted: 11/01/2011] [Indexed: 11/22/2022]
73
Meena RC, Thakur S, Nath S, Chakrabarti A. Tolerance to thermal and reductive stress in Saccharomyces cerevisiae is amenable to regulation by phosphorylation-dephosphorylation of ubiquitin conjugating enzyme 1 (Ubc1) S97 and S115. Yeast 2011;28:783-93. [PMID: 21996927 DOI: 10.1002/yea.1904] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2010] [Accepted: 08/25/2011] [Indexed: 11/06/2022]  Open
74
Wickliffe KE, Williamson A, Meyer HJ, Kelly A, Rape M. K11-linked ubiquitin chains as novel regulators of cell division. Trends Cell Biol 2011;21:656-63. [PMID: 21978762 DOI: 10.1016/j.tcb.2011.08.008] [Citation(s) in RCA: 126] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Revised: 08/24/2011] [Accepted: 08/31/2011] [Indexed: 02/07/2023]
75
An allosteric inhibitor of the human Cdc34 ubiquitin-conjugating enzyme. Cell 2011;145:1075-87. [PMID: 21683433 DOI: 10.1016/j.cell.2011.05.039] [Citation(s) in RCA: 184] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2011] [Revised: 05/02/2011] [Accepted: 05/31/2011] [Indexed: 12/29/2022]
76
Saha A, Lewis S, Kleiger G, Kuhlman B, Deshaies RJ. Essential role for ubiquitin-ubiquitin-conjugating enzyme interaction in ubiquitin discharge from Cdc34 to substrate. Mol Cell 2011;42:75-83. [PMID: 21474069 DOI: 10.1016/j.molcel.2011.03.016] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2010] [Revised: 02/22/2011] [Accepted: 03/24/2011] [Indexed: 12/16/2022]
77
An acidic loop and cognate phosphorylation sites define a molecular switch that modulates ubiquitin charging activity in Cdc34-like enzymes. PLoS Comput Biol 2011;7:e1002056. [PMID: 21637798 PMCID: PMC3102755 DOI: 10.1371/journal.pcbi.1002056] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2010] [Accepted: 04/01/2011] [Indexed: 11/19/2022]  Open
78
Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M. The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2. Cell 2011;144:769-81. [PMID: 21376237 DOI: 10.1016/j.cell.2011.01.035] [Citation(s) in RCA: 232] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2010] [Revised: 11/24/2010] [Accepted: 01/31/2011] [Indexed: 10/18/2022]
79
Meyer HJ, Rape M. Processive ubiquitin chain formation by the anaphase-promoting complex. Semin Cell Dev Biol 2011;22:544-50. [PMID: 21477659 DOI: 10.1016/j.semcdb.2011.03.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2011] [Accepted: 03/16/2011] [Indexed: 12/11/2022]
80
Lass A, Cocklin R, Scaglione KM, Skowyra M, Korolev S, Goebl M, Skowyra D. The loop-less tmCdc34 E2 mutant defective in polyubiquitination in vitro and in vivo supports yeast growth in a manner dependent on Ubp14 and Cka2. Cell Div 2011;6:7. [PMID: 21453497 PMCID: PMC3080790 DOI: 10.1186/1747-1028-6-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2010] [Accepted: 03/31/2011] [Indexed: 11/10/2022]  Open
81
Pruneda JN, Stoll KE, Bolton LJ, Brzovic PS, Klevit RE. Ubiquitin in motion: structural studies of the ubiquitin-conjugating enzyme∼ubiquitin conjugate. Biochemistry 2011;50:1624-33. [PMID: 21226485 DOI: 10.1021/bi101913m] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
82
E2s: structurally economical and functionally replete. Biochem J 2011;433:31-42. [PMID: 21158740 DOI: 10.1042/bj20100985] [Citation(s) in RCA: 152] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
83
Rodrigo-Brenni MC, Foster SA, Morgan DO. Catalysis of lysine 48-specific ubiquitin chain assembly by residues in E2 and ubiquitin. Mol Cell 2010;39:548-59. [PMID: 20797627 DOI: 10.1016/j.molcel.2010.07.027] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Revised: 05/13/2010] [Accepted: 06/01/2010] [Indexed: 11/24/2022]
84
Ju T, Bocik W, Majumdar A, Tolman JR. Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2. Proteins 2010;78:1291-301. [PMID: 20014027 DOI: 10.1002/prot.22648] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
85
Sakata E, Satoh T, Yamamoto S, Yamaguchi Y, Yagi-Utsumi M, Kurimoto E, Tanaka K, Wakatsuki S, Kato K. Crystal structure of UbcH5b~ubiquitin intermediate: insight into the formation of the self-assembled E2~Ub conjugates. Structure 2010;18:138-47. [PMID: 20152160 DOI: 10.1016/j.str.2009.11.007] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2009] [Revised: 06/26/2009] [Accepted: 11/09/2009] [Indexed: 12/24/2022]
86
Cole AR, Lewis LPC, Walden H. The structure of the catalytic subunit FANCL of the Fanconi anemia core complex. Nat Struct Mol Biol 2010;17:294-8. [PMID: 20154706 PMCID: PMC2929457 DOI: 10.1038/nsmb.1759] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Accepted: 12/07/2009] [Indexed: 02/07/2023]
87
Sgourakis NG, Patel MM, Garcia AE, Makhatadze GI, McCallum SA. Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain. J Mol Biol 2010;396:1128-44. [PMID: 20053359 DOI: 10.1016/j.jmb.2009.12.052] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2009] [Revised: 12/03/2009] [Accepted: 12/24/2009] [Indexed: 12/11/2022]
88
Serniwka SA, Shaw GS. The Structure of the UbcH8−Ubiquitin Complex Shows a Unique Ubiquitin Interaction Site. Biochemistry 2009;48:12169-79. [DOI: 10.1021/bi901686j] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
89
van Wijk SJL, Timmers HTM. The family of ubiquitin-conjugating enzymes (E2s): deciding between life and death of proteins. FASEB J 2009;24:981-93. [PMID: 19940261 DOI: 10.1096/fj.09-136259] [Citation(s) in RCA: 307] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
90
Das R, Mariano J, Tsai YC, Kalathur RC, Kostova Z, Li J, Tarasov SG, McFeeters RL, Altieri AS, Ji X, Byrd RA, Weissman AM. Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78. Mol Cell 2009;34:674-85. [PMID: 19560420 DOI: 10.1016/j.molcel.2009.05.010] [Citation(s) in RCA: 133] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2008] [Revised: 03/12/2009] [Accepted: 05/12/2009] [Indexed: 10/20/2022]
91
Zhou Y, Carpenter ZW, Brennan G, Nambu JR. The unique Morgue ubiquitination protein is conserved in a diverse but restricted set of invertebrates. Mol Biol Evol 2009;26:2245-59. [PMID: 19602541 DOI: 10.1093/molbev/msp147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
92
Noda NN, Ohsumi Y, Inagaki F. ATG Systems from the Protein Structural Point of View. Chem Rev 2009;109:1587-98. [DOI: 10.1021/cr800459r] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
93
Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T. NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway. ACTA ACUST UNITED AC 2008;10:127-36. [PMID: 19101823 DOI: 10.1007/s10969-008-9054-7] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2008] [Accepted: 11/28/2008] [Indexed: 11/25/2022]
94
Slama P, Filippis I, Lappe M. Detection of protein catalytic residues at high precision using local network properties. BMC Bioinformatics 2008;9:517. [PMID: 19055796 PMCID: PMC2632678 DOI: 10.1186/1471-2105-9-517] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2008] [Accepted: 12/04/2008] [Indexed: 12/02/2022]  Open
95
Modelling and molecular dynamics of the interaction between the E3 ubiquitin ligase Itch and the E2 UbcH7. Biochem Pharmacol 2008;76:1620-7. [DOI: 10.1016/j.bcp.2008.08.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2008] [Revised: 08/25/2008] [Accepted: 08/26/2008] [Indexed: 10/21/2022]
96
Huang A, de Jong RN, Wienk H, Winkler GS, Timmers HTM, Boelens R. E2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity. J Mol Biol 2008;385:507-19. [PMID: 18996392 DOI: 10.1016/j.jmb.2008.10.044] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2008] [Revised: 10/06/2008] [Accepted: 10/13/2008] [Indexed: 01/21/2023]
97
Beaudenon S, Huibregtse JM. HPV E6, E6AP and cervical cancer. BMC BIOCHEMISTRY 2008;9 Suppl 1:S4. [PMID: 19007434 PMCID: PMC2582798 DOI: 10.1186/1471-2091-9-s1-s4] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Lee I, Schindelin H. Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell 2008;134:268-78. [PMID: 18662542 DOI: 10.1016/j.cell.2008.05.046] [Citation(s) in RCA: 192] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2007] [Revised: 03/20/2008] [Accepted: 05/12/2008] [Indexed: 11/15/2022]
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Ponts N, Yang J, Chung DWD, Prudhomme J, Girke T, Horrocks P, Le Roch KG. Deciphering the ubiquitin-mediated pathway in apicomplexan parasites: a potential strategy to interfere with parasite virulence. PLoS One 2008;3:e2386. [PMID: 18545708 PMCID: PMC2408969 DOI: 10.1371/journal.pone.0002386] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2008] [Accepted: 04/24/2008] [Indexed: 11/19/2022]  Open
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Madden MM, Song W, Martell PG, Ren Y, Feng J, Lin Q. Substrate Properties of Ubiquitin Carboxyl-Terminally Derived Peptide Probes for Protein Ubiquitination. Biochemistry 2008;47:3636-44. [DOI: 10.1021/bi702078m] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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