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For: Wen M, Cong P, Zhang Z, Lu H, Li T. DeepMirTar: a deep-learning approach for predicting human miRNA targets. Bioinformatics 2019;34:3781-3787. [PMID: 29868708 DOI: 10.1093/bioinformatics/bty424] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 05/28/2018] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
51
Nazarov PV, Kreis S. Integrative approaches for analysis of mRNA and microRNA high-throughput data. Comput Struct Biotechnol J 2021;19:1154-1162. [PMID: 33680358 PMCID: PMC7895676 DOI: 10.1016/j.csbj.2021.01.029] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 01/19/2021] [Accepted: 01/20/2021] [Indexed: 12/11/2022]  Open
52
Riolo G, Cantara S, Marzocchi C, Ricci C. miRNA Targets: From Prediction Tools to Experimental Validation. Methods Protoc 2020;4:1. [PMID: 33374478 PMCID: PMC7839038 DOI: 10.3390/mps4010001] [Citation(s) in RCA: 134] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 12/17/2020] [Accepted: 12/22/2020] [Indexed: 12/12/2022]  Open
53
Kang Q, Meng J, Cui J, Luan Y, Chen M. PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction. Bioinformatics 2020;36:2986-2992. [PMID: 32087005 DOI: 10.1093/bioinformatics/btaa074] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 12/18/2019] [Accepted: 01/27/2020] [Indexed: 12/28/2022]  Open
54
Computational discovery and modeling of novel gene expression rules encoded in the mRNA. Biochem Soc Trans 2020;48:1519-1528. [PMID: 32662820 DOI: 10.1042/bst20191048] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 06/15/2020] [Accepted: 06/17/2020] [Indexed: 11/17/2022]
55
Yoshida K, Yokoi A, Kato T, Ochiya T, Yamamoto Y. The clinical impact of intra- and extracellular miRNAs in ovarian cancer. Cancer Sci 2020;111:3435-3444. [PMID: 32750177 PMCID: PMC7541008 DOI: 10.1111/cas.14599] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 07/17/2020] [Accepted: 07/28/2020] [Indexed: 12/12/2022]  Open
56
Kyrollos DG, Reid B, Dick K, Green JR. RPmirDIP: Reciprocal Perspective improves miRNA targeting prediction. Sci Rep 2020;10:11770. [PMID: 32678114 PMCID: PMC7366700 DOI: 10.1038/s41598-020-68251-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 06/15/2020] [Indexed: 12/16/2022]  Open
57
Zheng X, Chen L, Li X, Zhang Y, Xu S, Huang X. Prediction of miRNA targets by learning from interaction sequences. PLoS One 2020;15:e0232578. [PMID: 32369518 PMCID: PMC7199961 DOI: 10.1371/journal.pone.0232578] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 04/17/2020] [Indexed: 12/14/2022]  Open
58
Jiang H, Yang M, Chen X, Li M, Li Y, Wang J. miRTMC: A miRNA Target Prediction Method Based on Matrix Completion Algorithm. IEEE J Biomed Health Inform 2020;24:3630-3641. [PMID: 32287029 DOI: 10.1109/jbhi.2020.2987034] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
59
Schäfer M, Ciaudo C. Prediction of the miRNA interactome - Established methods and upcoming perspectives. Comput Struct Biotechnol J 2020;18:548-557. [PMID: 32211130 PMCID: PMC7082591 DOI: 10.1016/j.csbj.2020.02.019] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 02/21/2020] [Accepted: 02/27/2020] [Indexed: 01/21/2023]  Open
60
Mégret L, Nair SS, Dancourt J, Aaronson J, Rosinski J, Neri C. Combining feature selection and shape analysis uncovers precise rules for miRNA regulation in Huntington's disease mice. BMC Bioinformatics 2020;21:75. [PMID: 32093602 PMCID: PMC7041117 DOI: 10.1186/s12859-020-3418-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 02/17/2020] [Indexed: 12/12/2022]  Open
61
Fan X, Ming W, Zeng H, Zhang Z, Lu H. Deep learning-based component identification for the Raman spectra of mixtures. Analyst 2019;144:1789-1798. [PMID: 30672931 DOI: 10.1039/c8an02212g] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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