Scanning tunneling microscopy observations of benzene molecules on the Rh(111)-(3 x 3) (C6H6+2CO) surface

Nanoscale science of single molecules using local probes

Experiments on individual molecules using scanning probe microscopies have demonstrated an exciting diversity of physical, chemical, mechanical, and electronic phenomena. They have permitted deeper insight into the quantum electronics of molecular systems and have provided unique information on their conformational and mechanical properties. Concomitant developments in experimentation and theory have allowed a diverse range of molecules to be studied, varying in complexity from simple diatomics to biomolecular systems. At the level of an individual molecule, the interplays of mechanical and electronical behavior and chemical properties manifest themselves in an unusually clear manner. In revealing the crucial role of thermal, stochastic, and quantum-tunneling processes, they suggest that dynamics is inescapable and may play a decisive role in the evolution of nanotechnology.

An approach to long-range electron transfer mechanisms in metalloproteins: in situ scanning tunneling microscopy with submolecular resolution

In situ scanning tunneling microscopy (STM) of redox molecules, in aqueous solution, shows interesting analogies and differences compared with interfacial electrochemical electron transfer (ET) and ET in homogeneous solution. This is because the redox level represents a deep indentation in the tunnel barrier, with possible temporary electronic population. Particular perspectives are that both the bias voltage and the overvoltage relative to a reference electrode can be controlled, reflected in spectroscopic features when the potential variation brings the redox level to cross the Fermi levels of the substrate and tip. The blue copper protein azurin adsorbs on gold(111) via a surface disulfide group. Well resolved in situ STM images show arrays of molecules on the triangular gold(111) terraces. This points to the feasibility of in situ STM of redox metalloproteins directly in their natural aqueous medium. Each structure also shows a central brighter contrast in the constant current mode, indicative of 2- to 4-fold current enhancement compared with the peripheral parts. This supports the notion of tunneling via the redox level of the copper atom and of in situ STM as a new approach to long-range electron tunneling in metalloproteins.

Atomic-Scale Dynamics of a Two-Dimensional Gas-Solid Interface

The interface between a two-dimensional (2D) molecular gas and a 2D molecular solid has been imaged with a low-temperature, ultrahigh-vacuum scanning tunneling microscope. The solid consists of benzene molecules strongly bound to step edges on a Cu{111} surface. Benzene molecules on the Cu{111} terraces move freely as a 2D gas at 77 kelvin. Benzene molecules transiently occupy well-defined adsorption sites at the 1D edge of the 2D solid. Diffusion of molecules between these sites and exchange between the two phases at the interface are observed. On raised terraces of the copper surface, the 2D gas is held in a cage of the solid as in a 2D nanometer-scale gas bulb.

The fundamental unit of synthetic melanin: a verification by tunneling microscopy of X-ray scattering results

A characteristic dimension of a melanin protomolecule synthesized from tyrosine has been investigated by scanning tunneling microscopy (STM). Identification of a melanin protomolecule of approximately approximately 20 A lateral extent and approximately 10 A height has been established. This size is in good agreement with models constructed to fit wide angle X-ray diffraction experiments on melanin. These protomolecules are believed to consist of Van der Waals interacting stacks of a basic random polymer of 5.6 indolequinone units. There is extensive pi-delocalization within the individual polymeric sheets. Structure minimization and molecular orbital techniques were employed to verify the X-ray and STM results.