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Clarke WT, Ligneul C, Cottaar M, Ip IB, Jbabdi S. Universal dynamic fitting of magnetic resonance spectroscopy. Magn Reson Med 2024; 91:2229-2246. [PMID: 38265152 DOI: 10.1002/mrm.30001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/27/2023] [Accepted: 12/17/2023] [Indexed: 01/25/2024]
Abstract
PURPOSE Dynamic (2D) MRS is a collection of techniques where acquisitions of spectra are repeated under varying experimental or physiological conditions. Dynamic MRS comprises a rich set of contrasts, including diffusion-weighted, relaxation-weighted, functional, edited, or hyperpolarized spectroscopy, leading to quantitative insights into multiple physiological or microstructural processes. Conventional approaches to dynamic MRS analysis ignore the shared information between spectra, and instead proceed by independently fitting noisy individual spectra before modeling temporal changes in the parameters. Here, we propose a universal dynamic MRS toolbox which allows simultaneous fitting of dynamic spectra of arbitrary type. METHODS A simple user-interface allows information to be shared and precisely modeled across spectra to make inferences on both spectral and dynamic processes. We demonstrate and thoroughly evaluate our approach in three types of dynamic MRS techniques. Simulations of functional and edited MRS are used to demonstrate the advantages of dynamic fitting. RESULTS Analysis of synthetic functional 1H-MRS data shows a marked decrease in parameter uncertainty as predicted by prior work. Analysis with our tool replicates the results of two previously published studies using the original in vivo functional and diffusion-weighted data. Finally, joint spectral fitting with diffusion orientation models is demonstrated in synthetic data. CONCLUSION A toolbox for generalized and universal fitting of dynamic, interrelated MR spectra has been released and validated. The toolbox is shared as a fully open-source software with comprehensive documentation, example data, and tutorials.
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Affiliation(s)
- William T Clarke
- Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
| | - Clémence Ligneul
- Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
| | - Michiel Cottaar
- Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
| | - I Betina Ip
- Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
| | - Saad Jbabdi
- Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
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Versteeg E, Nam KM, Klomp DWJ, Bhogal AA, Siero JCW, Wijnen JP. A silent echo-planar spectroscopic imaging readout with high spectral bandwidth MRSI using an ultrasonic gradient axis. Magn Reson Med 2024; 91:2247-2256. [PMID: 38205917 DOI: 10.1002/mrm.30008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 12/18/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024]
Abstract
PURPOSE We present a novel silent echo-planar spectroscopic imaging (EPSI) readout, which uses an ultrasonic gradient insert to accelerate MRSI while producing a high spectral bandwidth (20 kHz) and a low sound level. METHODS The ultrasonic gradient insert consisted of a single-axis (z-direction) plug-and-play gradient coil, powered by an audio amplifier, and produced 40 mT/m at 20 kHz. The silent EPSI readout was implemented in a phase-encoded MRSI acquisition. Here, the additional spatial encoding provided by this silent EPSI readout was used to reduce the number of phase-encoding steps. Spectroscopic acquisitions using phase-encoded MRSI, a conventional EPSI-readout, and the silent EPSI readout were performed on a phantom containing metabolites with resonance frequencies in the ppm range of brain metabolites (0-4 ppm). These acquisitions were used to determine sound levels, showcase the high spectral bandwidth of the silent EPSI readout, and determine the SNR efficiency and the scan efficiency. RESULTS The silent EPSI readout featured a 19-dB lower sound level than a conventional EPSI readout while featuring a high spectral bandwidth of 20 kHz without spectral ghosting artifacts. Compared with phase-encoded MRSI, the silent EPSI readout provided a 4.5-fold reduction in scan time. In addition, the scan efficiency of the silent EPSI readout was higher (82.5% vs. 51.5%) than the conventional EPSI readout. CONCLUSIONS We have for the first time demonstrated a silent spectroscopic imaging readout with a high spectral bandwidth and low sound level. This sound reduction provided by the silent readout is expected to have applications in sound-sensitive patient groups, whereas the high spectral bandwidth could benefit ultrahigh-field MR systems.
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Affiliation(s)
- Edwin Versteeg
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Kyung Min Nam
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Dennis W J Klomp
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Alex A Bhogal
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Jeroen C W Siero
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
- Spinoza Centre for Neuroimaging, Amsterdam, Netherlands
| | - Jannie P Wijnen
- Center for Image Sciences, Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
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Hartman RI, Trepanowski N, Chang MS, Tepedino K, Gianacas C, McNiff JM, Fung M, Braghiroli NF, Grant-Kels JM. Multicenter prospective blinded melanoma detection study with a handheld elastic scattering spectroscopy device. JAAD Int 2024; 15:24-31. [PMID: 38371666 PMCID: PMC10869922 DOI: 10.1016/j.jdin.2023.10.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/26/2023] [Indexed: 02/20/2024] Open
Abstract
Background The elastic scattering spectroscopy (ESS) device (DermaSensor Inc., Miami, FL) is a noninvasive, painless, adjunctive tool for skin cancer detection. Objectives To investigate the performance of the ESS device in the detection of melanoma. Methods A prospective, investigator-blinded, multicenter study was conducted at 8 United States (US) and 2 Australian sites. All eligible skin lesions were clinically concerning for melanoma, examined with the ESS device, subsequently biopsied according to dermatologists' standard of care, and evaluated with histopathology. A total of 311 participants with 440 lesions were enrolled, including 44 melanomas (63.6% in situ and 36.4% invasive) and 44 severely dysplastic nevi. Results The observed sensitivity of the ESS device for melanoma detection was 95.5% (95% CI, 84.5% to 98.8%, 42 of 44 melanomas), and the observed specificity was 32.5% (95% CI, 27.2% to 38.3%). The positive and negative predictive values were 16.0% and 98.1%, respectively. Limitations The device was tested in a high-risk population with lesions selected for biopsy based on clinical and dermoscopic assessments of board-certified dermatologists. Most enrolled lesions were pigmented. Conclusion The ESS device's high sensitivity and NPV for the detection of melanoma suggest the device may be a useful adjunctive, point-of-care tool for melanoma detection.
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Affiliation(s)
- Rebecca I. Hartman
- Department of Dermatology, Brigham and Women’s Hospital, Boston, Massachusetts
- Harvard Medical School, Boston, Massachusetts
- Department of Dermatology, VA Integrated Service Network (VISN-1), Jamaica Plain, Massachusetts
| | - Nicole Trepanowski
- Department of Dermatology, Brigham and Women’s Hospital, Boston, Massachusetts
- Boston University School of Medicine, Boston, Massachusetts
| | - Michael S. Chang
- Department of Dermatology, Brigham and Women’s Hospital, Boston, Massachusetts
- Harvard Medical School, Boston, Massachusetts
| | | | - Christopher Gianacas
- The George Institute for Global Health, UNSW Sydney, Sydney, Australia
- School of Population Health, UNSW Sydney, Sydney, Australia
| | - Jennifer M. McNiff
- Departments of Dermatology and Pathology, Yale School of Medicine, New Haven, Connecticut
| | - Maxwell Fung
- University of California Davis School of Medicine, Sacramento, California
| | | | - Jane M. Grant-Kels
- Department of Dermatology, University of Connecticut School of Medicine, Farmington, Connecticut
- Department of Dermatology, University of Florida College of Medicine, Gainesville, Florida
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Zohreh Vahedi S, Farhadian S, Shareghi B, Asgharzadeh S. Interaction between the antioxidant compound safranal and α-chymotrypsin in spectroscopic fields and molecular modeling approaches. J Biomol Struct Dyn 2024; 42:4097-4109. [PMID: 37969053 DOI: 10.1080/07391102.2023.2272186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 05/21/2023] [Indexed: 11/17/2023]
Abstract
Among various herbal plants, saffron has been the subject of study in various medical and food fields. Among the compounds of saffron, safranal is one of them. Safranal is a monoterpene aldehyde. The precursor of safranal is called picrocrocin, whose hydrolysis leads to the production of safranal. picrocrocin has two sugar components and aglycone. sugar component was separated during the drying process of saffron and safranal is produced. Saffron is the cause of the saffron aroma. Previous studies have shown that safranal offers many benefits such as antioxidants, blood pressure regulation and anti-tumor qualities. On the other hand, α-Chy is an enzyme secreted by the pancreas into the intestine and then acts as an efficient protease. In this study, various methods, such as molecular dynamics (MD) simulation and molecular binding, and different spectroscopic techniques, as well as protein stability techniques, were used to investigate the possible interactions between safranal and α-Chy. UV spectroscopic studies were showing that the existence of safranal decreased α-Chy absorption intensity. safranal caused the intrinsic fluorescence of α-Chy to be quenched too. According to the Stern-Volmer equation, the interaction between safranal and α-Chy was of the static type. In thermodynamic calculations, the interaction between safranal and α-Chy was stabilized by hydrophobic forces. And it was found that this interaction continued spontaneously. These results were, thus, consistent with the Docking data simulation (with the negative ΔG° number and positive changes in enthalpy and entropy). The thermal stability of α-Chy was also measured, showing that its melting point was shifted to a higher threshold as a result of the interaction. also, MD simulation indicated that α-Chy became more stable in the presence of safranal. In this paper, all the results of the laboratory techniques were confirmed by molecular dynamic simulations, so the correctness of the results was confirmed. From this research, we hope to carefully observe the possible changes in the behavior and structure of the enzyme in the presence of safranal.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
| | - Sadegh Farhadian
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
| | - Behzad Shareghi
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
| | - Sanaz Asgharzadeh
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
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Li Z, Al-Wraikat M, Hao C, Liu Y. Comparison of Non-Covalent and Covalent Interactions between Lactoferrin and Chlorogenic Acid. Foods 2024; 13:1245. [PMID: 38672917 DOI: 10.3390/foods13081245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 04/12/2024] [Accepted: 04/15/2024] [Indexed: 04/28/2024] Open
Abstract
Adding polyphenols to improve the absorption of functional proteins has become a hot topic. Chlorogenic acid is a natural plant polyphenol with anti-inflammatory, antioxidant, and anticancer properties. Bovine lactoferrin is known for its immunomodulatory, anticancer, antibacterial, and iron-chelating properties. Therefore, the non-covalent binding of chlorogenic acid (CA) and bovine lactoferrin (BLF) with different concentrations under neutral conditions was studied. CA was grafted onto lactoferrin molecules by laccase catalysis, free radical grafting, and alkali treatment. The formation mechanism of non-covalent and covalent complexes of CA-BLF was analyzed by experimental test and theoretical prediction. Compared with the control BLF, the secondary structure of BLF in the non-covalent complex was rearranged and unfolded to provide more active sites, the tertiary structure of the covalent conjugate was changed, and the amino group of the protein participated in the covalent reaction. After adding CA, the covalent conjugates have better functional activity. These lactoferrin-polyphenol couplings can carry various bioactive compounds to create milk-based delivery systems for encapsulation.
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Affiliation(s)
- Zekun Li
- College of Food Engineering and Nutritional Science, Shaanxi Normal University, Xi'an 710119, China
| | - Majida Al-Wraikat
- College of Food Engineering and Nutritional Science, Shaanxi Normal University, Xi'an 710119, China
| | - Changchun Hao
- College of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Yongfeng Liu
- College of Food Engineering and Nutritional Science, Shaanxi Normal University, Xi'an 710119, China
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Kim K, Hwang H, Bae S, Kim SM, Han DH. The Effectiveness of a Digital App for Reduction of Clinical Symptoms in Individuals With Panic Disorder: Randomized Controlled Trial. J Med Internet Res 2024; 26:e51428. [PMID: 38608270 DOI: 10.2196/51428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 09/11/2023] [Accepted: 03/08/2024] [Indexed: 04/14/2024] Open
Abstract
BACKGROUND Panic disorder is a common and important disease in clinical practice that decreases individual productivity and increases health care use. Treatments comprise medication and cognitive behavioral therapy. However, adverse medication effects and poor treatment compliance mean new therapeutic models are needed. OBJECTIVE We hypothesized that digital therapy for panic disorder may improve panic disorder symptoms and that treatment response would be associated with brain activity changes assessed with functional near-infrared spectroscopy (fNIRS). METHODS Individuals (n=50) with a history of panic attacks were recruited. Symptoms were assessed before and after the use of an app for panic disorder, which in this study was a smartphone-based app for treating the clinical symptoms of panic disorder, panic symptoms, depressive symptoms, and anxiety. The hemodynamics in the frontal cortex during the resting state were measured via fNIRS. The app had 4 parts: diary, education, quest, and serious games. The study trial was approved by the institutional review board of Chung-Ang University Hospital (1041078-202112-HR-349-01) and written informed consent was obtained from all participants. RESULTS The number of participants with improved panic symptoms in the app use group (20/25, 80%) was greater than that in the control group (6/21, 29%; χ21=12.3; P=.005). During treatment, the improvement in the Panic Disorder Severity Scale (PDSS) score in the app use group was greater than that in the control group (F1,44=7.03; P=.01). In the app use group, the total PDSS score declined by 42.5% (mean score 14.3, SD 6.5 at baseline and mean score 7.2, SD 3.6 after the intervention), whereas the PDSS score declined by 14.6% in the control group (mean score 12.4, SD 5.2 at baseline and mean score 9.8, SD 7.9 after the intervention). There were no significant differences in accumulated oxygenated hemoglobin (accHbO2) at baseline between the app use and control groups. During treatment, the reduction in accHbO2 in the right ventrolateral prefrontal cortex (VLPFC; F1,44=8.22; P=.006) and the right orbitofrontal cortex (OFC; F1,44=8.88; P=.005) was greater in the app use than the control group. CONCLUSIONS Apps for panic disorder should effectively reduce symptoms and VLPFC and OFC brain activity in patients with panic disorder. The improvement of panic disorder symptoms was positively correlated with decreased VLPFC and OFC brain activity in the resting state. TRIAL REGISTRATION Clinical Research Information Service KCT0007280; https://cris.nih.go.kr/cris/search/detailSearch.do?seq=21448.
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Affiliation(s)
- KunJung Kim
- Chung Ang University Hospital, Seoul, Republic of Korea
| | | | - Sujin Bae
- Chung Ang University Hospital, Seoul, Republic of Korea
| | - Sun Mi Kim
- Chung Ang University Hospital, Seoul, Republic of Korea
| | - Doug Hyun Han
- Chung Ang University Hospital, Seoul, Republic of Korea
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Cavalieri G, Marson D, Giurgevich N, Valeri R, Felluga F, Laurini E, Pricl S. Molecular Ballet: Investigating the Complex Interaction between Self-Assembling Dendrimers and Human Serum Albumin via Computational and Experimental Methods. Pharmaceutics 2024; 16:533. [PMID: 38675194 DOI: 10.3390/pharmaceutics16040533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 04/09/2024] [Accepted: 04/10/2024] [Indexed: 04/28/2024] Open
Abstract
Dendrimers, intricate macromolecules with highly branched nanostructures, offer unique attributes including precise control over size, shape, and functionality, making them promising candidates for a wide range of biomedical applications. The exploration of their interaction with biological environments, particularly human serum albumin (HSA), holds significant importance for biomedical utilization. In this study, the interaction between HSA and a recently developed self-assembling amphiphilic dendrimer (AD) was investigated using various experimental techniques. Fluorescence spectroscopy and isothermal titration calorimetry revealed moderate interactions between the protein and the AD nanomicelles (NMs), primarily attributed to favorable enthalpic contributions arising from electrostatic interactions and hydrogen bonding. Structural analysis indicated minimal changes in HSA upon complexation with the AD NMs, which was further supported by computational simulations demonstrating stable interactions at the atomistic level. These findings provide valuable insights into the binding mechanisms and thermodynamic parameters governing HSA/AD NM interactions, thereby contributing to the understanding of their potential biomedical applications.
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Affiliation(s)
- Gabriele Cavalieri
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
| | - Domenico Marson
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
| | - Nicoletta Giurgevich
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
| | - Rachele Valeri
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
| | - Fulvia Felluga
- Department of Chemical and Pharmaceutical Sciences, DSCF, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Erik Laurini
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
| | - Sabrina Pricl
- Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Piazzale Europa 1, 34127 Trieste, Italy
- Department of General Biophysics, Faculty of Biology and Environmental Protection, University of Lodz, ul. Pomorska 141/143, 90-236 Łódź, Poland
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Pandey P, Wang X, Gupta H, Smith PW, Lapsheva E, Carroll PJ, Bacon AM, Booth CH, Minasian SG, Autschbach J, Zurek E, Schelter EJ. Realization of Organocerium-Based Fullerene Molecular Materials Showing Mott Insulator-Type Behavior. ACS Appl Mater Interfaces 2024; 16:17857-17869. [PMID: 38533949 DOI: 10.1021/acsami.3c18766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/28/2024]
Abstract
Electron-rich organocerium complexes (C5Me4H)3Ce and [(C5Me5)2Ce(ortho-oxa)], with redox potentials E1/2 = -0.82 V and E1/2 = -0.86 V versus Fc/Fc+, respectively, were reacted with fullerene (C60) in different stoichiometries to obtain molecular materials. Structurally characterized cocrystals: [(C5Me4H)3Ce]2·C60 (1) and [(C5Me5)2Ce(ortho-oxa)]3·C60 (2) of C60 with cerium-based, molecular rare earth precursors are reported for the first time. The extent of charge transfer in 1 and 2 was evaluated using a series of physical measurements: FT-IR, Raman, solid-state UV-vis-NIR spectroscopy, X-ray absorption near-edge structure (XANES) spectroscopy, and magnetic susceptibility measurements. The physical measurements indicate that 1 and 2 comprise the cerium(III) oxidation state, with formally neutral C60 as a cocrystal in both cases. Pressure-dependent periodic density functional theory calculations were performed to study the electronic structure of 1. Inclusion of a Hubbard-U parameter removes Ce f states from the Fermi level, opens up a band gap, and stabilizes FM/AFM magnetic solutions that are isoenergetic because of the large distances between the Ce(III) cations. The electronic structure of this strongly correlated Mott insulator-type system is reminiscent of the well-studied Ce2O3.
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Affiliation(s)
- Pragati Pandey
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Xiaoyu Wang
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, United States
| | - Himanshu Gupta
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Patrick W Smith
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Ekaterina Lapsheva
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Patrick J Carroll
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Alexandra M Bacon
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Corwin H Booth
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Stefan G Minasian
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, United States
| | - Eva Zurek
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, United States
| | - Eric J Schelter
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
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Korte B, Mathios D. Innovation in Non-Invasive Diagnosis and Disease Monitoring for Meningiomas. Int J Mol Sci 2024; 25:4195. [PMID: 38673779 DOI: 10.3390/ijms25084195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 03/26/2024] [Accepted: 04/07/2024] [Indexed: 04/28/2024] Open
Abstract
Meningiomas are tumors of the central nervous system that vary in their presentation, ranging from benign and slow-growing to highly aggressive. The standard method for diagnosing and classifying meningiomas involves invasive surgery and can fail to provide accurate prognostic information. Liquid biopsy methods, which exploit circulating tumor biomarkers such as DNA, extracellular vesicles, micro-RNA, proteins, and more, offer a non-invasive and dynamic approach for tumor classification, prognostication, and evaluating treatment response. Currently, a clinically approved liquid biopsy test for meningiomas does not exist. This review provides a discussion of current research and the challenges of implementing liquid biopsy techniques for advancing meningioma patient care.
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Affiliation(s)
- Brianna Korte
- Department of Neurosurgery, Washington University Medical Campus, St. Louis, MO 63110, USA
| | - Dimitrios Mathios
- Department of Neurosurgery, Washington University Medical Campus, St. Louis, MO 63110, USA
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Marques AC, Costa PC, Velho S, Amaral MH. Analytical Techniques for Characterizing Tumor-Targeted Antibody-Functionalized Nanoparticles. Life (Basel) 2024; 14:489. [PMID: 38672759 DOI: 10.3390/life14040489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/07/2024] [Accepted: 04/08/2024] [Indexed: 04/28/2024] Open
Abstract
The specific interaction between cell surface receptors and corresponding antibodies has driven opportunities for developing targeted cancer therapies using nanoparticle systems. It is challenging to design and develop such targeted nanomedicines using antibody ligands, as the final nanoconjugate's specificity hinges on the cohesive functioning of its components. The multicomponent nature of antibody-conjugated nanoparticles also complicates the characterization process. Regardless of the type of nanoparticle, it is essential to perform physicochemical characterization to establish a solid foundation of knowledge and develop suitable preclinical studies. A meaningful physicochemical evaluation of antibody-conjugated nanoparticles should include determining the quantity and orientation of the antibodies, confirming the antibodies' integrity following attachment, and assessing the immunoreactivity of the obtained nanoconjugates. In this review, the authors describe the various techniques (electrophoresis, spectroscopy, colorimetric assays, immunoassays, etc.) used to analyze the physicochemical properties of nanoparticles functionalized with antibodies and discuss the main results.
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Affiliation(s)
- Ana Camila Marques
- UCIBIO-Applied Molecular Biosciences Unit, MEDTECH, Laboratory of Pharmaceutical Technology, Department of Drug Sciences, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
- Associate Laboratory i4HB, Institute for Health and Bioeconomy, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
| | - Paulo C Costa
- UCIBIO-Applied Molecular Biosciences Unit, MEDTECH, Laboratory of Pharmaceutical Technology, Department of Drug Sciences, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
- Associate Laboratory i4HB, Institute for Health and Bioeconomy, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
| | - Sérgia Velho
- i3S-Institute for Research and Innovation in Health, University of Porto, 4200-135 Porto, Portugal
- IPATIMUP-Institute of Molecular Pathology and Immunology of the University of Porto, 4200-135 Porto, Portugal
| | - Maria Helena Amaral
- UCIBIO-Applied Molecular Biosciences Unit, MEDTECH, Laboratory of Pharmaceutical Technology, Department of Drug Sciences, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
- Associate Laboratory i4HB, Institute for Health and Bioeconomy, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal
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Scheer T, Rohde M, Breithaupt R, Jung N, Lange R. Customizable Presentation Attack Detection for Improved Resilience of Biometric Applications Using Near-Infrared Skin Detection. Sensors (Basel) 2024; 24:2389. [PMID: 38676006 DOI: 10.3390/s24082389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/28/2024] [Accepted: 04/03/2024] [Indexed: 04/28/2024]
Abstract
Due to their user-friendliness and reliability, biometric systems have taken a central role in everyday digital identity management for all kinds of private, financial and governmental applications with increasing security requirements. A central security aspect of unsupervised biometric authentication systems is the presentation attack detection (PAD) mechanism, which defines the robustness to fake or altered biometric features. Artifacts like photos, artificial fingers, face masks and fake iris contact lenses are a general security threat for all biometric modalities. The Biometric Evaluation Center of the Institute of Safety and Security Research (ISF) at the University of Applied Sciences Bonn-Rhein-Sieg has specialized in the development of a near-infrared (NIR)-based contact-less detection technology that can distinguish between human skin and most artifact materials. This technology is highly adaptable and has already been successfully integrated into fingerprint scanners, face recognition devices and hand vein scanners. In this work, we introduce a cutting-edge, miniaturized near-infrared presentation attack detection (NIR-PAD) device. It includes an innovative signal processing chain and an integrated distance measurement feature to boost both reliability and resilience. We detail the device's modular configuration and conceptual decisions, highlighting its suitability as a versatile platform for sensor fusion and seamless integration into future biometric systems. This paper elucidates the technological foundations and conceptual framework of the NIR-PAD reference platform, alongside an exploration of its potential applications and prospective enhancements.
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Affiliation(s)
- Tobias Scheer
- Institute of Safety and Security Research, University of Applied Sciences Bonn-Rhein-Sieg, Grantham-Allee 20, 53757 Sankt Augustin, Germany
| | - Markus Rohde
- Institute of Safety and Security Research, University of Applied Sciences Bonn-Rhein-Sieg, Grantham-Allee 20, 53757 Sankt Augustin, Germany
| | - Ralph Breithaupt
- Federal Office for Information Security, Godesberger Allee 185-189, 53175 Bonn, Germany
| | - Norbert Jung
- Institute of Safety and Security Research, University of Applied Sciences Bonn-Rhein-Sieg, Grantham-Allee 20, 53757 Sankt Augustin, Germany
| | - Robert Lange
- Institute of Safety and Security Research, University of Applied Sciences Bonn-Rhein-Sieg, Grantham-Allee 20, 53757 Sankt Augustin, Germany
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12
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Smak TJ, de Peinder P, Van der Waal JC, Altink R, Vollmer I, Weckhuysen BM. Oxidative Conversion of Polyethylene Towards Di-Carboxylic Acids: A Multi-Analytical Approach. ChemSusChem 2024; 17:e202301198. [PMID: 38009265 DOI: 10.1002/cssc.202301198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 11/26/2023] [Accepted: 11/27/2023] [Indexed: 11/28/2023]
Abstract
To reduce the pressure on the environment created by the increasing amount of plastic waste, the need to develop suitable plastic recycling methods has become more evident. However, the chemical recycling toolbox for polyethylene (PE), the most abundant type of plastic waste, remains underdeveloped. In this work, analytical methods were developed to explore the possibility to oxidatively convert PE into di-carboxylic acids as reaction products. A multi-analytical approach including gas chromatography-mass spectrometry, gas chromatography-flame ionization detection, several (2D) nuclear magnetic resonance methods as well as in-situ transmission infrared spectroscopy was used. This led to a thorough qualitative and quantitative analysis on the product mixture, which extends and clarifies the existing literature. Without a catalyst (thermally) already up to 7 mol % di-carboxylic acids can be formed. Furthermore, it was found that the majority of the oxidized functionalities are carboxylic acids, (methyl) ketones, γ-lactones, γ-ketones and esters. An intra-molecular hydrogen shift seemed key in the cleavage step and the formation of late-stage side products. In addition, crosslinking reactions due to esterification reactions seem to limit the di-carboxylic acid yield. Therefore, these two handles can be taken into account to study and design similar (catalytic) systems for the oxidative conversion of plastic waste.
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Affiliation(s)
- Tom J Smak
- Inorganic Chemistry and Catalysis group, Debye Institute for Nanomaterials Science and Institute for Sustainable and Circular Chemistry, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Peter de Peinder
- Inorganic Chemistry and Catalysis group, Debye Institute for Nanomaterials Science and Institute for Sustainable and Circular Chemistry, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | | | - Rinke Altink
- TNO, Brightsite, Urmonderbaan 22, 6167 RD, Geleen, The Netherlands
| | - Ina Vollmer
- Inorganic Chemistry and Catalysis group, Debye Institute for Nanomaterials Science and Institute for Sustainable and Circular Chemistry, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Bert M Weckhuysen
- Inorganic Chemistry and Catalysis group, Debye Institute for Nanomaterials Science and Institute for Sustainable and Circular Chemistry, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
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13
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Bhattacharjee P, Sarkar P, Bhadra K. Evaluation of therapeutic role of harmaline: in vitro cytotoxicity targeting nucleic acids. J Asian Nat Prod Res 2024; 26:519-533. [PMID: 37656039 DOI: 10.1080/10286020.2023.2251116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 08/17/2023] [Accepted: 08/17/2023] [Indexed: 09/02/2023]
Abstract
Use of small molecules as valuable drugs against diseases is still an indefinable purpose due to the lack of in-detail knowledge regarding proper bio-target identification, specificity aspects, mode-mechanism of binding and proper in vitro study. Harmaline, an important beta-carboline alkaloid, shows effective anti-proliferative action against different types of human cancers and is also found to be a nucleic acid targeting natural molecule. This review sought to address the different signal pathways of apoptosis by harmaline in different cancer cell lines and simultaneously to characterize the structure activity aspects of the alkaloid with different motifs of nucleic acid to show its preference, biological efficacy and genotoxicity. The results open up new insights for the design and development of small molecule-based nucleic acid therapeutic agents.
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Affiliation(s)
| | - Paromita Sarkar
- Department of Zoology, University of Kalyani, Nadia, W. Bengal 741235, India
| | - Kakali Bhadra
- Department of Zoology, University of Kalyani, Nadia, W. Bengal 741235, India
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14
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Yadollahi E, Shareghi B, Farhadian S, Hashemi Shahraki F. Conformational dynamics of trypsin in the presence of caffeic acid: a spectroscopic and computational investigation. J Biomol Struct Dyn 2024; 42:3108-3117. [PMID: 37278377 DOI: 10.1080/07391102.2023.2212077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 05/01/2023] [Indexed: 06/07/2023]
Abstract
Caffeic acid is one of the widely distributed phenolic compounds in nature and can be found in planet products. On the other hand, trypsin is a vital digestive enzyme in the intestine that plays an essential role in the immune response, blood coagulation, apoptosis and protein maturation like protein digestion. Several studies have revealed the inhibitory effects of the phenolic compound on the digestive enzyme. The present study reports functional and conformational alteration of trypsin after caffeic acid addition using multiple experimental and computational techniques for the first time. The intrinsic fluorescence of trypsin is quenched in the presence of caffeic acid via a static mechanism. The percent of secondary structures (α-helix and β-sheet) of trypsin alter after caffeic acid addition. In the kinetic study, a reduction in the trypsin function is obtained with a lower Vmax and Kcat upon interaction with caffeic acid. The thermal study reveals an unstable structure of trypsin upon complex formation with this phenolic compound. Also, the binding sites and conformational changes of trypsin are elucidated through molecular docking and molecular dynamic simulation.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Elham Yadollahi
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
- Central Laboratory, Shahrekord University, Shahrekord, Iran
| | - Behzad Shareghi
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
- Central Laboratory, Shahrekord University, Shahrekord, Iran
| | - Sadegh Farhadian
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
- Central Laboratory, Shahrekord University, Shahrekord, Iran
| | - Fatemeh Hashemi Shahraki
- Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, Iran
- Central Laboratory, Shahrekord University, Shahrekord, Iran
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15
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Rudszuck T, Nirschl H, Guthausen G. Combined nuclear magnetic resonance methods in quality control of lubricants in green energy production. Magn Reson Chem 2024; 62:212-221. [PMID: 36843335 DOI: 10.1002/mrc.5339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/17/2023] [Accepted: 02/23/2023] [Indexed: 06/18/2023]
Abstract
NMR methods were applied for lubricant analysis. Different factors influence the real aging of lubricants on diverse length scales and are captured by NMR. Chemical conversion of additives is addressed by NMR spectroscopy. High-field NMR experiments allow the identification and quantification of chemical components and are transferred to benchtop devices. Molecular dynamics and contaminations like fuel or abrasion are addressed via NMR relaxation and diffusion. Quality parameters were extracted via suitable data analysis of NMR raw data, which allow the detection of aging and indicate changes in the oil composition. At the same time, the methodology is optimized to the conditions in quality control. The feasibility is shown the example of a series of lubricants from applications in regenerative energy production, namely, wind turbine oils and biogas motor oils.
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Affiliation(s)
- Thomas Rudszuck
- Institute for Mechanical Engineering and Mechanics, KIT, 76131, Karlsruhe, Germany
| | - Hermann Nirschl
- Institute for Mechanical Engineering and Mechanics, KIT, 76131, Karlsruhe, Germany
| | - Gisela Guthausen
- Institute for Mechanical Engineering and Mechanics, KIT, 76131, Karlsruhe, Germany
- Engler-Bunte Institut, Water Chemistry and Technology, KIT, 76131, Karlsruhe, Germany
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16
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Yim A, Alberto M, Sharma V, Green A, Mclean A, du Plessis J, Wong LM, Wood B, Ischia J, Raman J, Bolton D. Near-infrared spectroscopy as a novel method of ex vivo bladder cancer tissue characterisation. BJU Int 2024; 133 Suppl 4:44-52. [PMID: 38238965 DOI: 10.1111/bju.16226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
OBJECTIVE To evaluate near-infrared (NIR) spectroscopy in differentiating between benign and malignant bladder pathologies ex vivo immediately after resection, including the grade and stage of malignancy. PATIENTS AND METHODS A total of 355 spectra were measured on 71 bladder specimens from patients undergoing transurethral resection of bladder tumour (TURBT) between April and August 2022. Scan time was 5 s, undertaken using a portable NIR spectrometer within 10 min from excision. Specimens were then sent for routine histopathological correlation. Machine learning models were applied to the spectral dataset to construct diagnostic algorithms; these were then tested for their ability to predict the histological diagnosis of each sample using its NIR spectrum. RESULTS A two-group algorithm comparing low- vs high-grade urothelial cancer demonstrated 97% sensitivity, 99% specificity, and the area under the receiver operating characteristic curve (AUC) was 0.997. A three-group algorithm predicting stages Ta vs T1 vs T2 achieved 97% sensitivity, 92% specificity, and the AUC was 0.996. CONCLUSIONS This first study evaluating the diagnostic potential of NIR spectroscopy in urothelial cancer shows that it can be accurately used to assess tissue in an ex vivo setting immediately after TURBT. This offers point-of-care assessment of bladder pathology, with potential to influence the extent of resection, reducing both the need for re-resection where invasive disease may be suspected, and also the potential for complications where extent of diagnostic resection can be limited. Further studies utilising fibre-optic probes offer the potential for in vivo assessment.
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Affiliation(s)
- Arthur Yim
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
- Young Urology Researchers Organisation (YURO), Melbourne, Victoria, Australia
| | - Matthew Alberto
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Varun Sharma
- Department of Cardiac Surgery, Austin Health, Heidelberg, Victoria, Australia
- Department of Surgery, University of Melbourne, Melbourne, Victoria, Australia
- Spectromix Lab, Melbourne, Victoria, Australia
| | - Alexander Green
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Aaron Mclean
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Justin du Plessis
- Department of Anatomical Pathology, Austin Health, Heidelberg, Victoria, Australia
| | - Lih-Ming Wong
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Bayden Wood
- Spectromix Lab, Melbourne, Victoria, Australia
- Centre for Biospectroscopy, Monash University, Clayton, Victoria, Australia
| | - Joseph Ischia
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
| | - Jaishankar Raman
- Department of Cardiac Surgery, Austin Health, Heidelberg, Victoria, Australia
- Department of Surgery, University of Melbourne, Melbourne, Victoria, Australia
- Spectromix Lab, Melbourne, Victoria, Australia
| | - Damien Bolton
- Department of Urology, Austin Health, Heidelberg, Victoria, Australia
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17
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Cho Y, Lee W, Sin H, Oh S, Choi KC, Jun JH. Non-Invasive Alcohol Concentration Measurement Using a Spectroscopic Module: Outlook for the Development of a Drunk Driving Prevention System. Sensors (Basel) 2024; 24:2252. [PMID: 38610464 PMCID: PMC11014244 DOI: 10.3390/s24072252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/08/2024] [Accepted: 01/08/2024] [Indexed: 04/14/2024]
Abstract
Alcohol acts as a central nervous system depressant and falls under the category of psychoactive drugs. It has the potential to impair vital bodily functions, including cognitive alertness, muscle coordination, and induce fatigue. Taking the wheel after consuming alcohol can lead to delayed responses in emergency situations and increases the likelihood of collisions with obstacles or suddenly appearing objects. Statistically, drivers under the influence of alcohol are seven times more likely to cause accidents compared to sober individuals. Various techniques and methods for alcohol measurement have been developed. The widely used breathalyzer, which requires direct contact with the mouth, raises concerns about hygiene. Methods like chromatography require skilled examiners, while semiconductor sensors exhibit instability in sensitivity over measurement time and has a short lifespan, posing structural challenges. Non-dispersive infrared analyzers face structural limitations, and in-vehicle air detection methods are susceptible to external influences, necessitating periodic calibration. Despite existing research and technologies, there remain several limitations, including sensitivity to external factors such as temperature, humidity, hygiene consideration, and the requirement for periodic calibration. Hence, there is a demand for a novel technology that can address these shortcomings. This study delved into the near-infrared wavelength range to investigate optimal wavelengths for non-invasively measuring blood alcohol concentration. Furthermore, we conducted an analysis of the optical characteristics of biological substances, integrated these data into a mathematical model, and demonstrated that alcohol concentration can be accurately sensed using the first-order modeling equation at the optimal wavelength. The goal is to minimize user infection and hygiene issues through a non-destructive and non-invasive method, while applying a compact spectrometer sensor suitable for button-type ignition devices in vehicles. Anticipated applications of this study encompass diverse industrial sectors, including the development of non-invasive ignition button-based alcohol prevention systems, surgeon's alcohol consumption status in the operating room, screening heavy equipment operators for alcohol use, and detecting alcohol use in close proximity to hazardous machinery within factories.
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Affiliation(s)
- Yechan Cho
- Department of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea; (Y.C.); (W.L.); (H.S.); (S.O.)
| | - Wonjune Lee
- Department of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea; (Y.C.); (W.L.); (H.S.); (S.O.)
| | - Heock Sin
- Department of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea; (Y.C.); (W.L.); (H.S.); (S.O.)
| | - Suseong Oh
- Department of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea; (Y.C.); (W.L.); (H.S.); (S.O.)
| | - Kyo Chang Choi
- Road Innovation Technology, Jincheon-gun 27856, Chungcheongbuk-do, Republic of Korea;
| | - Jae-Hoon Jun
- Department of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea; (Y.C.); (W.L.); (H.S.); (S.O.)
- Research Institute of Biomedical Engineering, Konkuk University, Chungju-si 27478, Chungcheongbuk-do, Republic of Korea
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18
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May JL, Garcia-Mora J, Edwards M, Rossmeisl JH. An Illustrated Scoping Review of the Magnetic Resonance Imaging Characteristics of Canine and Feline Brain Tumors. Animals (Basel) 2024; 14:1044. [PMID: 38612283 PMCID: PMC11010916 DOI: 10.3390/ani14071044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 03/25/2024] [Accepted: 03/27/2024] [Indexed: 04/14/2024] Open
Abstract
Magnetic resonance imaging (MRI) is used pervasively in veterinary practice for the antemortem diagnosis of intracranial tumors. Here, we provide an illustrated summary of the published MRI features of primary and secondary intracranial tumors of dogs and cats, following PRISMA scoping review guidelines. The PubMed and Web of Science databases were searched for relevant records, and input from stakeholders was solicited to select data for extraction. Sixty-seven studies of moderate to low-level evidence quality describing the MRI features of pathologically confirmed canine and feline brain tumors met inclusion criteria. Considerable variability in data inclusion and reporting, as well as low case numbers, prohibited comparative data analyses. Available data support a holistic MRI approach incorporating lesion number, location within the brain, shape, intrinsic signal appearances on multiparametric sequences, patterns of contrast enhancement, and associated secondary changes in the brain to prioritize differential imaging diagnoses, and often allows for accurate presumptive diagnosis of common intracranial tumors. Quantitative MRI techniques show promise for improving discrimination of neoplastic from non-neoplastic brain lesions, as well as differentiating brain tumor types and grades, but sample size limitations will likely remain a significant practical obstacle to the design of robustly powered radiomic studies. For many brain tumor variants, particularly in cats, there remains a need for standardized studies that correlate clinicopathologic and neuroimaging data.
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Affiliation(s)
- James L. May
- Veterinary and Comparative Neuro-Oncology Laboratory, Department of Small Animal Clinical Sciences, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA; (J.L.M.); (J.G.-M.)
| | - Josefa Garcia-Mora
- Veterinary and Comparative Neuro-Oncology Laboratory, Department of Small Animal Clinical Sciences, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA; (J.L.M.); (J.G.-M.)
| | - Michael Edwards
- Department of Small Animal Clinical Sciences, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA;
| | - John H. Rossmeisl
- Veterinary and Comparative Neuro-Oncology Laboratory, Department of Small Animal Clinical Sciences, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA; (J.L.M.); (J.G.-M.)
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Mucchietto A, Baumgaertl K, Grundler D. Magnon-Assisted Magnetization Reversal of Ni 81Fe 19 Nanostripes on Y 3Fe 5O 12 with Different Interfaces. ACS Nano 2024; 18:8641-8648. [PMID: 38488387 DOI: 10.1021/acsnano.3c06353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Magnetic bit writing by short-wave magnons without conversion to the electrical domain is expected to be a game-changer for in-memory computing architectures. Recently, the reversal of nanomagnets by propagating magnons was demonstrated. However, experiments have not yet explored different wavelengths and the nonlinear excitation regime of magnons required for computational tasks. We report on the magnetization reversal of individual 20 nm thick Ni81Fe19 (Py) nanostripes integrated onto 113 nm thick yttrium iron garnet (YIG). We suppress direct interlayer exchange coupling by an intermediate layer, such as Cu and SiO2. By exciting magnons in YIG with wavelengths λ down to 148 nm we observe the reversal of the integrated ferromagnets in a small external field of 14 mT. Magnons with a small wavelength of λ = 195 nm, i.e., twice the width of the Py nanostripes, induced the reversal at a spin-precessional power of only about 1 nW after propagating over 15 μm in YIG. Such small power value has not been reported so far. Considerations based on dynamic dipolar coupling explain the observed wavelength dependence of the magnon-induced reversal efficiency. For an increased power, the stripes reversed in an external field of only about 1 mT. Our findings are important for the practical implementation of nonvolatile storage of broadband magnon signals in YIG by means of bistable nanomagnets without the need of an appreciable global magnetic field.
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Affiliation(s)
- Andrea Mucchietto
- Laboratory of Nanoscale Magnetic Materials and Magnonics, Institute of Materials (IMX), École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Korbinian Baumgaertl
- Laboratory of Nanoscale Magnetic Materials and Magnonics, Institute of Materials (IMX), École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Dirk Grundler
- Laboratory of Nanoscale Magnetic Materials and Magnonics, Institute of Materials (IMX), École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- Institute of Electrical and Micro Engineering (IEM), 'Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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20
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Gallenkamp C, Kramm UI, Krewald V. FeN 4 Environments upon Reduction: A Computational Analysis of Spin States, Spectroscopic Properties, and Active Species. JACS Au 2024; 4:940-950. [PMID: 38559729 PMCID: PMC10976608 DOI: 10.1021/jacsau.3c00714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 04/04/2024]
Abstract
FeN4 motifs, found, for instance, in bioinorganic chemistry as heme-type cofactors, play a crucial role in man-made FeNC catalysts for the oxygen reduction reaction. Such single-atom catalysts are a potential alternative to platinum-based catalysts in fuel cells. Since FeNC catalysts are prepared via pyrolysis, the resulting materials are amorphous and contain side phases and impurities. Therefore, the geometric and electronic nature of the catalytically active FeN4 site remains to be clarified. To further understand the behavior of FeN4 centers in electrochemistry and their expected spectroscopic behavior upon reduction, we investigate two FeN4 environments (pyrrolic and pyridinic). These are represented by the model complexes [Fe(TPP)Cl] and [Fe(phen2N2)Cl], where TPP = tetraphenylporphyrin and phen = 1,10-phenanthroline. We predict their Mössbauer, UV-vis, and NRV spectral data using density functional theory as windows into their electronic structure differences. By varying the axial ligand, we further show how well small chemical changes in both complexes can be discerned. We find that the differences in ligand field strength in pyrrolic and pyridinic coordination result in different spin ground states, which in turn leads to distinct Mössbauer spectroscopic properties. As a result, pyrrolic nitrogen donors with a weaker ligand field are predicted to show more pronounced spectroscopic differences under in situ and operando conditions, while pyridinic nitrogen donors are expected to show less pronounced spectroscopic changes upon reduction and/or ligand loss. We therefore suggest that a weaker ligand field leads to better detectability of catalytic intermediates in in situ and operando experiments.
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Affiliation(s)
- Charlotte Gallenkamp
- Theoretische
Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany
| | - Ulrike I. Kramm
- Anorganische
Chemie, Technische Universität Darmstadt, Otto-Berndt-Str. 3, 64287 Darmstadt, Germany
| | - Vera Krewald
- Theoretische
Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany
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21
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Panizzi L, Vignes M, Dittmer KE, Waterland MR, Rogers CW, Sano H, McIlwraith CW, Riley CB. Infrared Spectroscopy of Synovial Fluid Shows Accuracy as an Early Biomarker in an Equine Model of Traumatic Osteoarthritis. Animals (Basel) 2024; 14:986. [PMID: 38612225 PMCID: PMC11011100 DOI: 10.3390/ani14070986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Revised: 03/13/2024] [Accepted: 03/19/2024] [Indexed: 04/14/2024] Open
Abstract
Osteoarthritis is a leading cause of lameness and joint disease in horses. A simple, economical, and accurate diagnostic test is required for routine screening for OA. This study aimed to evaluate infrared (IR)-based synovial fluid biomarker profiling to detect early changes associated with a traumatically induced model of equine carpal osteoarthritis (OA). Unilateral carpal OA was induced arthroscopically in 9 of 17 healthy thoroughbred fillies; the remainder served as Sham-operated controls. The median age of both groups was 2 years. Synovial fluid (SF) was obtained before surgical induction of OA (Day 0) and weekly until Day 63. IR absorbance spectra were acquired from dried SF films. Following spectral pre-processing, predictive models using random forests were used to differentiate OA, Sham, and Control samples. The accuracy for distinguishing between OA and any other joint group was 80%. The classification accuracy by sampling day was 87%. For paired classification tasks, the accuracies by joint were 75% for OA vs. OA Control and 70% for OA vs. Sham. The accuracy for separating horses by group (OA vs. Sham) was 68%. In conclusion, SF IR spectroscopy accurately discriminates traumatically induced OA joints from controls.
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Affiliation(s)
- Luca Panizzi
- School of Veterinary Science, Massey University, Palmerston North 4442, New Zealand; (L.P.); (C.W.R.)
| | - Matthieu Vignes
- School of Mathematical and Computational Sciences, Massey University, Palmerston North 4442, New Zealand;
| | - Keren E. Dittmer
- School of Veterinary Science, Massey University, Palmerston North 4442, New Zealand; (L.P.); (C.W.R.)
| | - Mark R. Waterland
- School of Natural Sciences, Massey University, Palmerston North 4442, New Zealand;
| | - Chris W. Rogers
- School of Veterinary Science, Massey University, Palmerston North 4442, New Zealand; (L.P.); (C.W.R.)
- School of Agriculture and Environment, Massey University, Palmerston North 4442, New Zealand
| | - Hiroki Sano
- Veterinary Specialty Hospital Hong Kong, G/F—2/F 165-171 Wan Chai Road, Wan Chai, Hong Kong, China;
| | - C. Wayne McIlwraith
- Orthopaedic Research Center, C. Wayne McIlwraith Translational Medicine Institute, Colorado State University, Fort Collins, CO 80523, USA;
| | - Christopher B. Riley
- Department of Clinical Studies, Ontario Veterinary College, Guelph, ON N1G 2W1, Canada
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Sokołowski P, Cierpiak K, Szczerska M, Wróbel M, Łuczkiewicz A, Fudala-Książek S, Wityk P. Optical method supported by machine learning for dynamics of C-reactive protein concentrations changes detection in biological matrix samples. J Biophotonics 2024:e202300523. [PMID: 38508857 DOI: 10.1002/jbio.202300523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 02/14/2024] [Accepted: 03/06/2024] [Indexed: 03/22/2024]
Abstract
In this article we present the novel spectroscopy method supported with machine learning for real-time detection of infectious agents in wastewater. In the case of infectious diseases, wastewater monitoring can be used to detect the presence of inflammation biomarkers, such as the proposed C-reactive protein, for monitoring inflammatory conditions and mass screening during epidemics for early detection in communities of concern, such as hospitals, schools, and so on. The proposed spectroscopy method supported with machine learning for real-time detection of infectious agents will eliminate the need for time-consuming processes, which contribute to reducing costs. The spectra in range 220-750 nm were used for the study. We achieve accuracy of our prediction model up to 68% with using only absorption spectrophotometer and machine learning. The use of such a set makes the method universal, due to the possibility of using many different detectors.
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Affiliation(s)
- Patryk Sokołowski
- Department of Metrology and Optoelectronics, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Gdańsk, Poland
| | - Kacper Cierpiak
- Department of Metrology and Optoelectronics, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Gdańsk, Poland
| | - Małgorzata Szczerska
- Department of Metrology and Optoelectronics, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Gdańsk, Poland
| | - Maciej Wróbel
- Department of Metrology and Optoelectronics, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Gdańsk, Poland
| | - Aneta Łuczkiewicz
- Department of Environmental Engineering Technology, Faculty of Civil and Environmental Engineering, Gdańsk University of Technology, Gdańsk, Poland
| | - Sylwia Fudala-Książek
- Department of Sanitary Engineering, Faculty of Civil and Environmental Engineering, Gdańsk University of Technology, Gdańsk, Poland
| | - Paweł Wityk
- Department of Biopharmaceutics and Pharmacodynamics, Medical University of Gdańsk, Gdańsk, Poland
- Department of Molecular Biotechnology and Microbiology, Faculty of Chemistry, Gdańsk University of Technology, Gdańsk, Poland
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23
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Collins S, Linnolahti M. Sheet Models for Methylaluminoxane (MAO) Activators? A Theoretical Case Study involving rac-Me 2Si(η 5-C 9H 6) 2Zr (SBIZr) Complexes. Chemphyschem 2024:e202300856. [PMID: 38469662 DOI: 10.1002/cphc.202300856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 03/09/2024] [Accepted: 03/10/2024] [Indexed: 03/13/2024]
Abstract
Activation of SBIZrMe2 or SBIZrMeCl and a sheet model for an active component of hydrolytic MAO, (MeAlO)16(Me3Al)6, (16,6) has been studied by DFT. Contact ion-pair formation occurs through the intermediacy of SBIZrMe(Cl) or SBIZrMe2 reacting with sheet 16,6 to furnish SBIZrMe-μ-X(MeAlO)16(Me3Al)6 (2, X=Me, Cl). Contact ion-pairs 2 would be in equilibrium with heterodinuclear catalyst precursors [SBIZrMe2AlMe2][(MeAlO)16(Me3Al)6X] (3 (X=Me, Cl) through reversible binding of Me3Al at higher Al : Zr ratios. Calculations show that formation of ion-pairs 3 from contact ion-pairs 2 is more favourable for the SBIZr compared with the parent Cp2Zr complexes. TD-DFT calculations were conducted on relevant SBIZr complexes to relate the results to earlier spectroscopic studies of catalyst activation using UV-Vis spectroscopy. Finally, propene insertion into ion-pairs 2, SBIZrMe-μ-MeB(C6F5)3 (6) and [SBIZrMe][B(C6F5)4] (7) was studied at M06-2X/TZVP level of theory. These studies suggest that contact ion-pairs 2 are significantly less reactive towards insertion than 6 or 7, in disagreement with experiment.
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Affiliation(s)
- Scott Collins
- Department of Chemistry, University of Eastern Finland, Joensuu Campus, Yliopistokatu 7, FI-80100, Joensuu, Finland
| | - Mikko Linnolahti
- Department of Chemistry, University of Eastern Finland, Joensuu Campus, Yliopistokatu 7, FI-80100, Joensuu, Finland
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24
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Zheng K, Ghosh S, Granick S. Exceptions to Fourier's Law at the Macroscale. Proc Natl Acad Sci U S A 2024; 121:e2320337121. [PMID: 38442154 PMCID: PMC10945759 DOI: 10.1073/pnas.2320337121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 01/31/2024] [Indexed: 03/07/2024] Open
Abstract
The usual basis to analyze heat transfer within materials is the equation formulated 200 years ago, Fourier's law, which is identical mathematically to the mass diffusion equation, Fick's law. Revisiting this assumption regarding heat transport within translucent materials, performing the experiments in vacuum to avoid air convection, we compare the model predictions to infrared-based measurements with nearly mK temperature resolution. After heat pulses, we find macroscale non-Gaussian tails in the surface temperature profile. At steady state, we find macroscale anomalous hot spots when the sample is topographically rough, and this is validated by using two additional independent methods to measure surface temperature. These discrepancies from Fourier's law for translucent materials suggest that internal radiation whose mean-free-path is millimeters interacts with defects to produce small heat sources that by secondary emission afford an additional, non-local mode of heat transport. For these polymer and inorganic glass materials, this suggests unique strategies of heat management design.
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Affiliation(s)
- Kaikai Zheng
- Center for Soft and Living Matter, Institute for Basic Science, Ulsan44919, South Korea
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA01003
| | - Shankar Ghosh
- Tata Institute for Fundamental Research, Mumbai, Maharashtra400005, India
| | - Steve Granick
- Center for Soft and Living Matter, Institute for Basic Science, Ulsan44919, South Korea
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA01003
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25
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Yan H, Ghosh A, Pal A, Zhang H, Bi T, Ghalanos G, Zhang S, Hill L, Zhang Y, Zhuang Y, Xavier J, Del'Haye P. Real-time imaging of standing-wave patterns in microresonators. Proc Natl Acad Sci U S A 2024; 121:e2313981121. [PMID: 38412129 DOI: 10.1073/pnas.2313981121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 01/08/2024] [Indexed: 02/29/2024] Open
Abstract
Real-time characterization of microresonator dynamics is important for many applications. In particular, it is critical for near-field sensing and understanding light-matter interactions. Here, we report camera-facilitated imaging and analysis of standing wave patterns in optical ring resonators. The standing wave pattern is generated through bidirectional pumping of a microresonator, and the scattered light from the microresonator is collected by a short-wave infrared (SWIR) camera. The recorded scattering patterns are wavelength dependent, and the scattered intensity exhibits a linear relation with the circulating power within the microresonator. By modulating the relative phase between the two pump waves, we can control the generated standing waves' movements and characterize the resonator with the SWIR camera. The visualized standing wave enables subwavelength distance measurements of scattering targets with nanometer-level accuracy. This work opens broad avenues for applications in on-chip near-field (bio)sensing, real-time characterization of photonic integrated circuits, and backscattering control in telecom systems.
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Affiliation(s)
- Haochen Yan
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, Friedrich Alexander University, Erlangen-Nuremberg 91058, Germany
| | - Alekhya Ghosh
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, Friedrich Alexander University, Erlangen-Nuremberg 91058, Germany
| | - Arghadeep Pal
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, Friedrich Alexander University, Erlangen-Nuremberg 91058, Germany
| | - Hao Zhang
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
| | - Toby Bi
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, Friedrich Alexander University, Erlangen-Nuremberg 91058, Germany
| | - George Ghalanos
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
| | - Shuangyou Zhang
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
| | - Lewis Hill
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, University of Strathclyde, Glasgow G4 0NG, United Kingdom
| | - Yaojing Zhang
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
| | - Yongyong Zhuang
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Electronic Materials Research Laboratory, Key Laboratory of the Ministry of Education & International Center for Dielectric Research, School of Electronic Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Jolly Xavier
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Pascal Del'Haye
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
- Department of Physics, Friedrich Alexander University, Erlangen-Nuremberg 91058, Germany
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26
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de Lima EJSP, Paz WHP, Dávila Cardozo NM, Boleti APA, Silva PSE, Mukoyama LTH, da Silva FMA, Costa EV, Tavares JF, Migliolo L, Koolen HHF. Anti-biofilm and anti-inflammatory active diterpene isolated from the fruit of Xylopia benthamii R.E.Fr. Nat Prod Res 2024; 38:956-967. [PMID: 37154695 DOI: 10.1080/14786419.2023.2208357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 04/17/2023] [Indexed: 05/10/2023]
Abstract
Xylopia benthamii (Annonaceae) is a plant with limited phytochemical and pharmacological evidence. Thus, using LC-MS/MS, we performed exploratory analyses of the fruit extract of X. benthamii, resulting in the tentative identification of alkaloids (1-7) and diterpenes (8-13). Through the application of chromatography techniques with the extract of X. benthamii, two kaurane diterpenes were isolated, xylopinic acid (9) and ent-15-oxo-kaur-16-en-19-oic acid (11). Their structures were established using spectroscopy (NMR 1D/2D) and mass spectrometry. The isolated compounds were submitted to anti-biofilm analysis against Acinetobacter baumannii, anti-neuroinflammatory and cytotoxic activity in BV-2 cells. Compound 11 (201.75 µM) inhibited 35% of bacterial biofilm formation and high anti-inflammatory activity in BV-2 (IC50 = 0.78 µM). In conclusion, the results demonstrated that compound 11 was characterized for the first time with pharmacological potential in the development of new alternatives for studies with neuroinflammatory diseases.
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Affiliation(s)
- Emilly J S P de Lima
- Grupo de Pesquisa em Metabolômica e Espectrometria de Massas, Universidade do Estado do Amazonas, Manaus, Brasil
| | - Weider H P Paz
- Grupo de Pesquisa em Metabolômica e Espectrometria de Massas, Universidade do Estado do Amazonas, Manaus, Brasil
| | | | - Ana Paula A Boleti
- S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brasil
| | - Patrícia Souza E Silva
- S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brasil
| | - Lincoln T H Mukoyama
- S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brasil
| | | | - Emmanoel V Costa
- Departamento de Química, Universidade Federal do Amazonas, Manaus, Brasil
| | - Josean F Tavares
- Laboratório Multiusuário de Caracterização e Análises, Universidade Federal da Paraíba, João Pessoa, Brasil
| | - Ludovico Migliolo
- S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brasil
| | - Hector H F Koolen
- Grupo de Pesquisa em Metabolômica e Espectrometria de Massas, Universidade do Estado do Amazonas, Manaus, Brasil
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27
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Marienberg H, Desch N, Mozin V, Sykora‐Mirle L, Müller A, Roth A, Käfer M, Neef R. Automized inline monitoring in perfused mammalian cell culture by MIR spectroscopy without calibration model building. Eng Life Sci 2024; 24:e2300237. [PMID: 38444619 PMCID: PMC10910268 DOI: 10.1002/elsc.202300237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 11/10/2023] [Accepted: 11/17/2023] [Indexed: 03/07/2024] Open
Abstract
Process Analytical Technologies (PATs) are taking a key role in the run for automatization in the biopharmaceutical industry. Spectroscopic methods such as Raman spectroscopy or mid-infrared (MIR) spectroscopy are getting more recognition in the recent years for inline monitoring of bioprocesses due to their ability to measure various molecules simultaneously. However, their dependency on laborious model calibration making them a challenge to implement. In this study, a novel one-point calibration that requires a single reference point prior to the inline monitoring of glucose and lactate in bioprocesses with MIR spectroscopy is assessed with 22 mammalian cell perfusion (PER) processes in two different scales and four different products. Concentrations are predicted over all PERs runs with a root mean square error (RMSE) of 0.29 g/L for glucose and 0.24 g/L for lactate, respectively. For comparison conventional partial least square regression (PLSR) models were used and trained with spectroscopic data from six bioreactor runs in two different scales and three products. The general accuracy of those models (RMSE of 0.41 g/L for glucose and 0.16 g/L for lactate) are in the range of the accuracy of the one-point calibration. This shows the potential of the one-point calibration as an approach making spectroscopy more accessible for bioprocess development.
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Affiliation(s)
| | | | | | | | | | - Andreas Roth
- IRUBIS GmbHMunichGermany
- Hochschule MannheimMannheimGermany
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28
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Harshitha VRS, I G K I, Suresh V, Pitchiah S. Synthesis of Zinc Oxide Nanoparticles From Cymodocea Serrulata Leaf Extract and Their Biological Activities. Cureus 2024; 16:e55521. [PMID: 38576637 PMCID: PMC10990964 DOI: 10.7759/cureus.55521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 03/04/2024] [Indexed: 04/06/2024] Open
Abstract
Introduction The utilization of Cymodocea serrulata for the eco-friendly synthesis of zinc oxide nanoparticles, which contain distinguishable nanostructures, presents a cost-effective and environmentally sustainable alternative for producing zinc nanoparticles. The production process of zinc nanoparticles are rich in phytochemicals, which can serve as stabilizing and reducing agents. Zinc nanoparticles can easily pass through bacterial cell walls and reach all cellular components. C. serrulata, is a small submerged angiosperm commonly found in submerged and tidal coastal environments. Aim Analysis of the biological activities of zinc oxide nanoparticles made from C. serrulata leaf extract. Materials and Methods Dry leaves of C. serrulata were ground into a powder, which was then placed into a conical flask and filled with water. Subsequently, the color of the mixture turned black. Next, a 20 mm piece of ZnO was dissolved in a 60 ml sample of distilled water to prepare the metal solution. Following this, a wavelength scan ranging from 200 to 700 nm was conducted using ultraviolet (UV) spectroscopy. After shaking the solution for an hour, a final reading was taken across the UV spectrum. The synthetic sample should also be centrifuged to remove any pellets and subsequently dried in a hot air oven. Result Using nanoscale profiling, the average particle size was measured and found to be less than 100 nm, specifically UV spectrum analysis revealed a notable absorbance value of 47.0 nm, at different angles within the peak height. The wavelength range of the zinc nanoparticles was observed to be between 250 and 350 nm. Conclusion The antibacterial properties of ZnO NPs have been demonstrated through in vitro investigations, indicating their potential application in in vivo studies.
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Affiliation(s)
- Vantipalli Raga Sai Harshitha
- Department of Physiology, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Science, Saveetha University, Chennai, IND
| | - Ilangovar I G K
- Department of Physiology, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Science, Saveetha University, Chennai, IND
| | - Vasugi Suresh
- Department of Physiology, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Science, Saveetha University, Chennai, IND
| | - Sivaperumal Pitchiah
- Department of Prosthodontics, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Science, Saveetha University, Chennai, IND
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29
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Manolakos D, Patrick G, Geisse JK, Rabinovitz H, Buchanan K, Hoang P, Rodriguez-Diaz E, Bigio IJ, Cognetta AB. Use of an elastic-scattering spectroscopy and artificial intelligence device in the assessment of lesions suggestive of skin cancer: A comparative effectiveness study. JAAD Int 2024; 14:52-58. [PMID: 38143790 PMCID: PMC10746496 DOI: 10.1016/j.jdin.2023.08.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/23/2023] [Indexed: 12/26/2023] Open
Abstract
Background Skin cancer is the most common form of cancer worldwide. As artificial intelligence (AI) expands its scope within dermatology, leveraging technology may aid skin cancer detection. Objective To assess the safety and effectiveness of an elastic-scattering spectroscopy (ESS) device in evaluating lesions suggestive of skin cancer. Methods This prospective, multicenter clinical validation study was conducted at 4 US investigational sites. Patients with skin lesions suggestive of melanoma and nonmelanoma skin cancers were clinically assessed by expert dermatologists and evaluated by a device using AI algorithms comparing current ESS lesion readings with training data sets. Statistical analyses included sensitivity, specificity, AUROC, negative predictive value (NPV), and positive predictive value (PPV). Results Overall device sensitivity was 97.04%, with subgroup sensitivity of 96.67% for melanoma, 97.22% for basal cell carcinoma, and 97.01% for squamous cell carcinoma. No statistically significant difference was found between the device and dermatologist performance (P = .8203). Overall specificity of the device was 26.22%. Overall NPV of the device was 89.58% and PPV was 57.54%. Conclusion The ESS device demonstrated high sensitivity in detecting skin cancer. Use of this device may assist primary care clinicians in assessing suspicious lesions, potentially reducing skin cancer morbidity and mortality through expedited and enhanced detection and intervention.
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Affiliation(s)
| | | | - John K. Geisse
- Departments of Dermatology and Pathology, University of California San Francisco, San Francisco, California
| | - Harold Rabinovitz
- Skin and Cancer Associates, Plantation, Florida
- Department of Dermatology, University of Miami School of Medicine, Miami, Florida
- Medical College of Georgia, Augusta University, Augusta, Georgia
| | - Kendall Buchanan
- Medical College of Georgia, Augusta University, Augusta, Georgia
| | | | | | - Irving J. Bigio
- Department of Electrical & Computer Engineering, Boston University, Boston, Massachusetts
| | - Armand B. Cognetta
- Florida State University College of Medicine, Tallahassee, Florida
- Dermatology Associates of Tallahassee, Tallahassee, Florida
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30
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Rathore AS, Sarin D. What should next-generation analytical platforms for biopharmaceutical production look like? Trends Biotechnol 2024; 42:282-292. [PMID: 37775418 DOI: 10.1016/j.tibtech.2023.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 08/29/2023] [Accepted: 08/29/2023] [Indexed: 10/01/2023]
Abstract
Biotherapeutic products, particularly complex products such as monoclonal antibodies (mAbs), have as many as 20-30 critical quality attributes (CQAs), thereby requiring a collection of orthogonal, high-resolution analytical tools for characterization and making characterization a resource-intensive task. As discussed in this Opinion, the need to reduce the cost of developing biotherapeutic products and the need to adopt Industry 4.0 and eventually Industry 5.0 paradigms are driving a reappraisal of existing analytical platforms. Next-generation platforms will have reduced offline testing, renewed focus on online testing and real-time monitoring, multiattribute monitoring, and extensive use of advanced data analytics and automation. They will be more complex, more sensitive, resource lean, and more responsive compared with existing platforms.
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Affiliation(s)
- Anurag S Rathore
- Department of Chemical Engineering, Indian Institute of Technology Delhi, Delhi, India.
| | - Deepika Sarin
- Department of Chemical Engineering, Indian Institute of Technology Delhi, Delhi, India
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31
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Kirse TM, Maisuls I, Spierling L, Hepp A, Kösters J, Strassert CA. One Dianionic Luminophore with Three Coordination Modes Binding Four Different Metals: Toward Unexpectedly Phosphorescent Transition Metal Complexes. Adv Sci (Weinh) 2024; 11:e2306801. [PMID: 38161218 PMCID: PMC10953592 DOI: 10.1002/advs.202306801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 12/08/2023] [Indexed: 01/03/2024]
Abstract
This work reports on a battery of coordination compounds featuring a versatile dianionic luminophore adopting three different coordination modes (mono, bi, and tridentate) while chelating Pd(II), Pt(II), Au(III), and Hg(II) centers. An in-depth structural characterization of the ligand precursor (H2 L) and six transition metal complexes ([HLPdCNtBu], [LPtCl], [LPtCNtBu], [LPtCNPhen], [HLHgCl], and [LAuCl]) is presented. The influence of the cations and coordination modes of the luminophore and co-ligands on the photophysical properties (including photoluminescence quantum yields (ΦL ), excited state lifetimes (τ), and average (non-)radiative rate constants) are evaluated at various temperatures in different phases. Five complexes show interesting photophysical properties at room temperature (RT) in solution. Embedment in frozen glassy matrices at 77 K significantly boosts their luminescence by suppressing radiationless deactivation paths. Thus, the Pt(II)-based compounds provide the highest efficiencies, with slight variations upon exchange of the ancillary ligand. In the case of [HLPdCNtBu], both ΦL and τ increase over 30-fold as compared to RT. Furthermore, the Hg(II) complex achieves, for the first time in its class, a ΦL exceeding 60% and millisecond-range lifetimes. This demonstrates that a judicious ligand design can pave the way toward versatile coordination compounds with tunable excited state properties.
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Affiliation(s)
- Thomas M. Kirse
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
- CiMiCSoN and CeNTechUniversität MünsterHeisenbergstr. 1148149MünsterGermany
| | - Iván Maisuls
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
- CiMiCSoN and CeNTechUniversität MünsterHeisenbergstr. 1148149MünsterGermany
| | - Leander Spierling
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
- CiMiCSoN and CeNTechUniversität MünsterHeisenbergstr. 1148149MünsterGermany
| | - Alexander Hepp
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
| | - Jutta Kösters
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
| | - Cristian A. Strassert
- Institut für Anorganische und Analytische ChemieUniversität MünsterCorrensstr. 28/3048149MünsterGermany
- CiMiCSoN and CeNTechUniversität MünsterHeisenbergstr. 1148149MünsterGermany
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32
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Zahid U, McCutcheon RA, Borgan F, Jauhar S, Pepper F, Nour MM, Rogdaki M, Osugo M, Murray GK, Hathway P, Murray RM, Egerton A, Howes OD. Corrigendum: The effect of antipsychotics on glutamate levels in the anterior cingulate cortex and clinical response: a 1H-MRS study in first-episode psychosis patients. Front Psychiatry 2024; 15:1292075. [PMID: 38495905 PMCID: PMC10941199 DOI: 10.3389/fpsyt.2024.1292075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 02/21/2024] [Indexed: 03/19/2024] Open
Abstract
[This corrects the article DOI: 10.3389/fpsyt.2022.967941.].
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Affiliation(s)
- Uzma Zahid
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Robert A. McCutcheon
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Faith Borgan
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Sameer Jauhar
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Fiona Pepper
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
- Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
- Department of Clinical and Movement Neurosciences, Queen Square Institute of Neurology, University College London Centre, London, United Kingdom
| | - Matthew M. Nour
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
- Max Planck University College London Centre for Computational Psychiatry and Ageing Research, London, United Kingdom
- Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom
| | - Maria Rogdaki
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
- Department of Child and Adolescent Psychiatry, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Martin Osugo
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Graham K. Murray
- Department of Psychiatry, University of Cambridge, Cambridge, United Kingdom
| | - Pamela Hathway
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Robin M. Murray
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Alice Egerton
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
| | - Oliver D. Howes
- Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom
- Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, United Kingdom
- H. Lundbeck UK, Valby, Denmark
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Kim J, Koo B, Khammari A, Park K, Lee H, Kwak K, Cho M. Water-Ion Interaction Determines the Mobility of Ions in Highly Concentrated Aqueous Electrolytes. ACS Appl Mater Interfaces 2024; 16:10033-10041. [PMID: 38373218 DOI: 10.1021/acsami.3c15609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
Solvation engineering plays a critical role in tailoring the performance of batteries, particularly through the use of highly concentrated electrolytes, which offer heterogeneous solvation structures of mobile ions with distinct electrochemical properties. In this study, we employed spectroscopic techniques and molecular dynamics simulations to investigate mixed-cation (Li+/K+) acetate aqueous electrolytes. Our research unravels the pivotal role of water in facilitating ion transport within a highly viscous medium. Notably, Li+ cations primarily form ion aggregates, predominantly interacting with acetate anions, while K+ cations emerge as the principal charge carriers, which is attributed to their strong interaction with water molecules. Intriguingly, even at a concentration as high as 40 m, a substantial amount of water molecules persistently engages in hydrogen bonding with one another, creating mobile regions rich in K+ ions. Our observations of a redshift of the OH stretching band of water suggest that the strength of the hydrogen bond alone cannot account for the expansion of the electrochemical stability window. These findings offer valuable insights into the cation transfer mechanism, shedding light on the contribution of water-bound cations to both the ion conductivity and the electrochemical stability window of aqueous electrolytes for rechargeable batteries. Our comprehensive molecular-level understanding of the interplay between cations and water provides a foundation for future advances in solvation engineering, leading to the development of high-performance batteries with improved energy storage and safety profiles.
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Affiliation(s)
- Jungyu Kim
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Korea
| | - Bonhyeop Koo
- Department of Energy Science and Engineering, DGIST, Daegu 42988, Korea
| | - Anahita Khammari
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Korea
| | - Kwanghee Park
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Korea
| | - Hochun Lee
- Department of Energy Science and Engineering, DGIST, Daegu 42988, Korea
| | - Kyungwon Kwak
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Korea
- Department of Chemistry, Korea University, Seoul 02841, Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Korea
- Department of Chemistry, Korea University, Seoul 02841, Korea
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Carena E, Mezzomo L, Vallana N, Ceribelli N, Di Liberto G, Mostoni S, Ferrara C, Mauri M, Lorenzi R, Giordano L, Ruffo R, Mustarelli P. PVDF-HFP Based, Quasi-Solid Nanocomposite Electrolytes for Lithium Metal Batteries. Small 2024:e2311805. [PMID: 38409572 DOI: 10.1002/smll.202311805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Indexed: 02/28/2024]
Abstract
Composite polymer electrolytes are systems of choice for future solid-state lithium metal batteries (LMBs). Poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-HFP) is among the most interesting matrices to develop new generation quasi-solid electrolytes (QSEs). Here it is reported on nanocomposites made of PVDF-HFP and pegylated SiO2 nanoparticles. Silica-based hybrid nanofillers are obtained by grafting chains of poly(ethylene glycol) methyl ether (PEG) with different molecular weight on the surface of silica nanoparticles. The functionalized nanofiller improves the mechanical, transport and electrochemical properties of the QSEs, which show good ionic conductivity values and high resistance against dendrite penetration, ensuring boosted long and safe device operation. The most promising result is obtained by dispersing 5 wt% of SiO2 functionalized with short PEG chains (PEG750 , Mw = 750 g mol-1 ) in the PVDF-HFP matrix with an ease solvent-casting procedure. It shows ionic conductivity of 0.1 mS cm-1 at 25 °C, more than 250 h resistance to stripping/plating, and impressive results during cycling tests in LMB with LiFePO4 cathode.
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Affiliation(s)
- Eleonora Carena
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Lorenzo Mezzomo
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Nicholas Vallana
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Nicole Ceribelli
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Giovanni Di Liberto
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Silvia Mostoni
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Chiara Ferrara
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Michele Mauri
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Roberto Lorenzi
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Livia Giordano
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Riccardo Ruffo
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
| | - Piercarlo Mustarelli
- Department of Materials Science of University of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
- GISEL-INSTM, Unit of Milano Bicocca, Via Cozzi 55, Milano, 20125, Italy
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van Wyngaard E, Blancquaert E, Nieuwoudt H, Aleixandre-Tudo JL. Exploration of Global and Specialized Near-Infrared Calibrations for the Quantification of Nutritional Content in Grapevine Organs, Berry Phenological Stages, and Shoot Lignification. Appl Spectrosc 2024:37028241232004. [PMID: 38403903 DOI: 10.1177/00037028241232004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
Current infrared spectroscopy applications in the field of viticulture are moving toward direct in-field measuring techniques. However, limited research is available on quantitative applications using direct measurement of fresh tissue. The few studies conducted have combined the spectral data from various cultivars, growing regions, grapevine organs, and phenological stages during model development. The spectral data from these heterogeneous samples are combined into a single data set and analyzed jointly during quantitative analysis. Combining the spectral information of these diverse samples into a global data set could be an unsuitable approach and could yield less accurate prediction results. Spectral differences among samples could be overlooked during model development and quantitative analysis. The development of specialized calibrations should be considered and could lead to more accurate quantitative analyses. This study explored a model optimization strategy attempting global and specialized calibrations. Global calibrations, containing data from multiple organs, berry phenological, and shoot lignification stages, were compared to specialized calibrations per organ or stage. The global calibration for organs contained data from shoots, leaves, and berries and produced moderately accurate prediction results for nitrogen, carbon, and hydrogen. The specialized calibrations per organ yielded more accurate calibrations with a coefficient of determination in validation (R2val) at 90.65% and a root mean square error of prediction (RMSEP) at 0.32% dry matter (DM) for the berries' carbon calibrations. The leaves and shoots carbon calibrations had R2val and RMSEP at 84.99%, 0.34% DM, and 90.06%, 0.37% DM, respectively. The specialized calibrations for nitrogen and hydrogen showed similar improvements in prediction accuracy per organ. Specialized calibrations per phenological and lignification stage were also explored. Not all stages showed improvement, however, most stages had comparable or improved results for the specialized calibrations compared to the global calibrations containing all phenological or lignification stages. The results indicated that both global and specialized calibrations should be considered during model development to optimize prediction accuracy.
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Affiliation(s)
- Elizma van Wyngaard
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Erna Blancquaert
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Hélène Nieuwoudt
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Jose Luis Aleixandre-Tudo
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
- Instituto de Ingeniería de Alimentos-Food UPV, Departamento de Tecnología de Alimentos, Universidad Politécnica de Valencia, Spain
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Goi A, Costa A, De Marchi M. The ability of a handheld near-infrared spectrometer for a rapid quality assessment of bovine colostrum including the Ig G concentration. J Dairy Sci 2024:S0022-0302(24)00493-4. [PMID: 38395397 DOI: 10.3168/jds.2023-24005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 01/24/2024] [Indexed: 02/25/2024]
Abstract
Portable infrared-based instruments have made significant contributions in different research fields. Within the dairy supply chain, for example, most of portable devices are based on near-infrared spectroscopy (NIRS) and are nowadays an important support for farmers and operators of the dairy sector, allowing fast decision-making, particularly for feed and milk quality evaluation and animal health and welfare monitoring. The affordability, portability, and ease of use of these innovative devices have been pivotal factors for the implementation in dairy farms. In fact, pocket-sized devices enable non-expert users to perform quick, low cost and non-destructive analysis on various samples without complex preparation. As bovine colostrum (BC) quality is mostly given by the Ig G (IgG) level, evaluating the ability of portable NIRS tools to measure antibodies concentration is advisable. In this study we used the wireless device SCiO manufactured by Consumer Physics Inc. (Tel Aviv, Israel) to collect BC spectra and then attempt to predict IgG concentration and gross and fine composition in individual samples collected as soon as possible after calving (<6 h) in primiparous and pluriparous Holstein cows farmed in 9 Italian farms. Chemometric analyses revealed that SCiO has promising predictive performance for colostral IgG concentration, total Ig concentration, fat, and AA (R2CV ≥ 0.75). Excellent accuracy was observed for dry matter, protein, and S prediction in cross-validation and good prediction ability in external validation (R2CV ≥ 0.93; R2V ≥ 0.82). Nonetheless, SCiO's ability to discriminate between good- and low-quality samples was satisfactory. The affordable cost, the accurate predictions, and the user-friendly design coupled with the increased interest in colostrum quality within the dairy sector may boost the collection of extensive BC data for management and genetic purposes in the near future.
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Affiliation(s)
- Arianna Goi
- Department of Agronomy, Food, Natural resources, Animals and Environment, University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Angela Costa
- Department of Veterinary Medical Sciences, University of Bologna, via Tolara di Sopra 50, 40064 Ozzano dell'Emilia (BO), Italy.
| | - Massimo De Marchi
- Department of Agronomy, Food, Natural resources, Animals and Environment, University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
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Smoleński P, Śliwińska-Hill U, Kwiecień A, Wolińska J, Poradowski D. Design, Synthesis, and Anti-Cancer Evaluation of Novel Water-Soluble Copper(I) Complexes Bearing Terpyridine and PTA Ligands. Molecules 2024; 29:945. [PMID: 38474457 DOI: 10.3390/molecules29050945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 01/24/2024] [Accepted: 02/15/2024] [Indexed: 03/14/2024] Open
Abstract
This study presents a simple and energy-efficient self-assembly LAG synthetic method for novel water-soluble copper(I) complexes [Cu(terpy)(PTA)][PF6] (1) and [Cu(terpy)(PTA)2][PF6] (2). They were characterized by FT-IR, 1H, and 31P{1H} NMR spectroscopy, elemental analysis, and single-crystal/powder X-ray diffraction (for 2). The X-ray analysis of compound 2 indicates a bidentate coordination mode of terpyridine to the metal center. Variable-temperature NMR tests indicate dynamic properties for terpyridine in the case of both compounds, as well as for the PTA ligands in the case of 2. Additionally, compounds 1 and 2 exhibit interesting cytotoxic activity, which was tested on normal human dermal fibroblasts (NHDFs), human lung carcinoma (A549), human breast adenocarcinoma (MCF-7), and human cervix carcinoma (HeLa) established cell lines. In comparison to the other tested compounds, complexes 1 and 2 seem to have significantly lower IC50 values against cancer cells (A549, HeLa, MCF-7), indicating their potential as prospective anticancer agents. Moreover, both compounds show no significant toxicity towards normal skin cells (NHDFs), suggesting a certain selectivity in their action on cancer cells. Cisplatin as a reference compound also exhibited considerable cytotoxicity against cancer cells but with a low level of selectivity, which could lead to unwanted effects on normal cells. Remarkably, compounds 1 and 2 exhibit up to 30 times the cytotoxic activity of cisplatin, with a six-fold lower toxicity to normal cells. They also interact strongly with human serum albumin, suggesting potential therapeutic applications. Overall, these compounds hold significant promise as potential chemotherapeutic agents.
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Affiliation(s)
- Piotr Smoleński
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Urszula Śliwińska-Hill
- Department of Basic Chemical Sciences, Faculty of Pharmacy, Wrocław Medical University, Borowska 211a, 50-556 Wrocław, Poland
| | - Anna Kwiecień
- Department of Basic Chemical Sciences, Faculty of Pharmacy, Wrocław Medical University, Borowska 211a, 50-556 Wrocław, Poland
| | - Joanna Wolińska
- Department of Biostructure and Animal Physiology, Faculty of Veterinary Medicine, Wrocław University of Environmental and Life Sciences, Kożuchowska 1, 51-631 Wrocław, Poland
| | - Dominik Poradowski
- Department of Biostructure and Animal Physiology, Faculty of Veterinary Medicine, Wrocław University of Environmental and Life Sciences, Kożuchowska 1, 51-631 Wrocław, Poland
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Cedeño E, Zuleta R, Mejorada Sánchez JL, Alvarado S, Marín E. A Differential Thermal Lens Spectrometry Method for Trace Detection. Appl Spectrosc 2024:37028241231828. [PMID: 38378011 DOI: 10.1177/00037028241231828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
Thermal lens spectroscopy (TLS) is a high-sensitivity method to determine the concentration of light-absorbing species in samples. Here, we implemented a transient configuration of the technique, with a focused pump and a collimated probe beam coaxially propagating. A Fabry-Perot optical resonator is incorporated allowing multi-passing of the probe beam through the sample to enhance sensitivity. We show how the low detection limit of the method can be reduced approximately by half by making differential measurements of the signal at a far field in the center point of the probe beam spot and that obtained by spatial filtering of the same beam, the so-called eclipsed signal. Measurements were performed in test samples of Deyman's organic dye, Strawberry 2143 v.7, dissolved in ethanol. The thermal lens signal measured as a function of the dye concentration in water at the center of the beam was compared with the differential signal resulting from this and the eclipsed beam.
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Affiliation(s)
- Enrique Cedeño
- Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada (CICATA) Unidad Legaria, Ciudad de México, Mexico
| | - Rodrigo Zuleta
- Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada (CICATA) Unidad Legaria, Ciudad de México, Mexico
| | - Jorge L Mejorada Sánchez
- Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada (CICATA) Unidad Legaria, Ciudad de México, Mexico
| | - Salvador Alvarado
- Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada (CICATA) Unidad Legaria, Ciudad de México, Mexico
| | - Ernesto Marín
- Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada (CICATA) Unidad Legaria, Ciudad de México, Mexico
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Cervenak M, Molnár OR, Horváth P, Smeller L. Stabilization of G-Quadruplex Structures of the SARS-CoV-2 Genome by TMPyP4, BRACO19, and PhenDC3. Int J Mol Sci 2024; 25:2482. [PMID: 38473730 DOI: 10.3390/ijms25052482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 02/14/2024] [Accepted: 02/16/2024] [Indexed: 03/14/2024] Open
Abstract
The G-quadruplex is one of the non-canonical structures formed by nucleic acids, which can be formed by guanine-rich sequences. They became the focus of much research when they were found in several oncogene promoter regions and also in the telomeres. Later on, they were discovered in viruses as well. Various ligands have been developed in order to stabilize DNA G-quadruplexes, which were believed to have an anti-cancer or antiviral effect. We investigated three of these ligands, and whether they can also affect the stability of the G-quadruplex-forming sequences of the RNA genome of SARS-CoV-2. All three investigated oligonucleotides showed the G-quadruplex form. We characterized their stability and measured their thermodynamic parameters using the Förster resonance energy transfer method. The addition of the ligands caused an increase in the unfolding temperature, but this effect was smaller compared to that found earlier in the case of G-quadruplexes of the hepatitis B virus, which has a DNA genome.
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Affiliation(s)
- Miklós Cervenak
- Department of Biophysics and Radiation Biology, Semmelweis University, 1094 Budapest, Hungary
| | - Orsolya Réka Molnár
- Department of Biophysics and Radiation Biology, Semmelweis University, 1094 Budapest, Hungary
| | - Péter Horváth
- Department of Pharmaceutical Chemistry, Semmelweis University, 1092 Budapest, Hungary
| | - László Smeller
- Department of Biophysics and Radiation Biology, Semmelweis University, 1094 Budapest, Hungary
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Zufry H, Munawar AA. Near-Infrared Spectroscopy for Distinguishing Malignancy in Thyroid Nodules. Appl Spectrosc 2024:37028241232440. [PMID: 38373401 DOI: 10.1177/00037028241232440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
Thyroid nodules are common clinical entities, with a significant proportion being malignant. Early, accurate, and non-invasive tools to differentiate benign and malignant nodules can optimize patient management and reduce unnecessary surgery. This study aimed to evaluate the efficacy and accuracy of near-infrared spectroscopy (NIRS) in distinguishing benign from malignant thyroid nodules. A diffuse reflectance spectrum for a total of 20 thyroid nodule samples (10 samples as colloid goiter and 10 samples as thyroid cancer), were acquired in the wavelength range from 1000 to 2500 nm. Spectral data from NIRS were analyzed by means of principal component analysis (PCA), quadratic discriminant analysis (QDA), and linear discriminant analysis (LDA) to classify and differentiate thyroid nodule samples. The present study found that NIRS effectively distinguished colloid goiter and thyroid cancer using the first two principal components (PCs), explaining 90% and 10% of the variance, respectively. QDA discrimination plot displayed a clear separation between colloid goiter and thyroid cancer with minimal overlap, aligning with reported 95% accuracy. Additionally, applying LDA to seven PCs from PCA achieved a 100% accuracy rate in classifying colloid goiter and thyroid cancer from near-infrared spectral data. In conclusion, NIRS offers a promising, non-invasive complementing diagnostic tool for differentiating benign from malignant thyroid nodules with high accuracy. Future work should integrate these results into predictive model development, emphasizing external validation, alternative performance metrics, and protecting against potential overfitting translation of a machine learning model to a clinical setting.
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Affiliation(s)
- Hendra Zufry
- Division of Endocrinology, Metabolism, and Diabetes-Thyroid Center, Department of Internal Medicine, School of Medicine, Universitas Syiah Kuala/Dr Zainoel Abidin Hospita, Banda Aceh, Indonesia
- Innovation and Research Center of Endocrinology, School of Medicine, Universitas Syiah Kuala, Banda Aceh, Indonesia
| | - Agus Arip Munawar
- Department of Agricultural Engineering, Universitas Syiah Kuala, Banda Aceh, Indonesia
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Zheng Y, Xu T, Wang X, Sun Z, Han B. Study on Bulk-Surface Transport Separation and Dielectric Polarization of Topological Insulator Bi 1.2Sb 0.8Te 0.4Se 2.6. Molecules 2024; 29:859. [PMID: 38398611 PMCID: PMC10893539 DOI: 10.3390/molecules29040859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/02/2024] [Accepted: 02/08/2024] [Indexed: 02/25/2024] Open
Abstract
This study successfully fabricated the quaternary topological insulator thin films of Bi1.2Sb0.8Te0.4Se2.6 (BSTS) with a thickness of 25 nm, improving the intrinsic defects in binary topological materials through doping methods and achieving the separation of transport characteristics between the bulk and surface of topological insulator materials by utilizing a comprehensive Physical Properties Measurement System (PPMS) and Terahertz Time-Domain Spectroscopy (THz-TDS) to extract electronic transport information for both bulk and surface states. Additionally, the dielectric polarization behavior of BSTS in the low-frequency (10-107 Hz) and high-frequency (0.5-2.0 THz) ranges was investigated. These research findings provide crucial experimental groundwork and theoretical guidance for the development of novel low-energy electronic devices, spintronic devices, and quantum computing technology based on topological insulators.
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Affiliation(s)
| | | | - Xuan Wang
- Department of Electric Engineering, Harbin University of Science and Technology, 52 Xuefu Rd., Nangang, Harbin 150080, China; (Y.Z.); (T.X.); (Z.S.); (B.H.)
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Tosin R, Cunha M, Monteiro-Silva F, Santos F, Barroso T, Martins R. Bi-directional hyperspectral reconstruction of cherry tomato: diagnosis of internal tissues maturation stage and composition. Front Plant Sci 2024; 15:1351958. [PMID: 38434432 PMCID: PMC10905776 DOI: 10.3389/fpls.2024.1351958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 01/24/2024] [Indexed: 03/05/2024]
Abstract
Introduction Precision monitoring maturity in climacteric fruits like tomato is crucial for minimising losses within the food supply chain and enhancing pre- and post-harvest production and utilisation. Objectives This paper introduces an approach to analyse the precision maturation of tomato using hyperspectral tomography-like. Methods A novel bi-directional spectral reconstruction method is presented, leveraging visible to near-infrared (Vis-NIR) information gathered from tomato spectra and their internal tissues (skin, pulp, and seeds). The study, encompassing 118 tomatoes at various maturation stages, employs a multi-block hierarchical principal component analysis combined with partial least squares for bi-directional reconstruction. The approach involves predicting internal tissue spectra by decomposing the overall tomato spectral information, creating a superset with eight latent variables for each tissue. The reverse process also utilises eight latent variables for reconstructing skin, pulp, and seed spectral data. Results The reconstruction of the tomato spectra presents a mean absolute percentage error of 30.44 % and 5.37 %, 5.25 % and 6.42 % and Pearson's correlation coefficient of 0.85, 0.98, 0.99 and 0.99 for the skin, pulp and seed, respectively. Quality parameters, including soluble solid content (%), chlorophyll (a.u.), lycopene (a.u.), and puncture force (N), were assessed and modelled with PLS with the original and reconstructed datasets, presenting a range of R2 higher than 0.84 in the reconstructed dataset. An empirical demonstration of the tomato maturation in the internal tissues revealed the dynamic of the chlorophyll and lycopene in the different tissues during the maturation process. Conclusion The proposed approach for inner tomato tissue spectral inference is highly reliable, provides early indications and is easy to operate. This study highlights the potential of Vis-NIR devices in precision fruit maturation assessment, surpassing conventional labour-intensive techniques in cost-effectiveness and efficiency. The implications of this advancement extend to various agronomic and food chain applications, promising substantial improvements in monitoring and enhancing fruit quality.
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Affiliation(s)
- Renan Tosin
- Department of Geosciences, Environment and Spatial Planning, Faculty of Sciences of the University of Porto, Porto, Portugal
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
| | - Mario Cunha
- Department of Geosciences, Environment and Spatial Planning, Faculty of Sciences of the University of Porto, Porto, Portugal
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
| | - Filipe Monteiro-Silva
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
| | - Filipe Santos
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
| | - Teresa Barroso
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
| | - Rui Martins
- INESC TEC - Institute for Systems and Computer Engineering, Technology and Science, Universidade do Porto, Porto, Portugal
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Nasereddin J, Al Wadi R, Zaid Al-Kilani A, Abu Khalil A, Al Natour M, Abu Dayyih W. The Use of Data Mining for Obtaining Deeper Insights into the Fabrication of Prednisolone-Loaded Chitosan Nanoparticles. AAPS PharmSciTech 2024; 25:38. [PMID: 38355842 DOI: 10.1208/s12249-024-02756-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 01/25/2024] [Indexed: 02/16/2024] Open
Abstract
The present work explores a data mining approach to study the fabrication of prednisolone-loaded chitosan nanoparticles and their properties. Eight PLC formulations were prepared using an automated adaptation of the antisolvent precipitation method. The PLCs were characterized using dynamic light scattering, infrared spectroscopy, and drug release studies. Results showed that that the effective diameter, loading capacity, encapsulation efficiency, zeta potential, and polydispersity of the PLCs were influenced by the concentration and molecular weight of chitosan. The drug release studies showed that PLCs exhibited significant dissolution enhancement compared to pure prednisolone crystals. Principal components analysis and partial least squares regression were applied to the infrared spectra and the DLS data to extract higher-order interactions and correlations between the critical quality attributes and the diameter of the PLCs. Principal components revealed that the spectra clustered according to the type of material, with PLCs forming a separate cluster from the raw materials and the physical mix. PLS was successful in predicting the ED of the PLCs from the FTIR spectra with R2 = 0.98 and RMSE = 27.18. The present work demonstrates that data mining techniques can be useful tools for obtaining deeper insights into the fabrication and properties of PLCs, and for optimizing their quality and performance. It also suggests that FTIR spectroscopy can be a rapid and non-destructive method for predicting the ED of PLCs.
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Affiliation(s)
- Jehad Nasereddin
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan.
| | - Reem Al Wadi
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan
| | - Ahlam Zaid Al-Kilani
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan
| | - Asad Abu Khalil
- Department of Pharmaceutics and Pharmaceutical Technology, The Faculty of Pharmacy and Medical Sciences, University of Petra, Amman, 11196, Jordan
| | - Mohammad Al Natour
- Department of Pharmaceutics and Pharmaceutical Technology, The Faculty of Pharmacy and Medical Sciences, University of Petra, Amman, 11196, Jordan
| | - Wael Abu Dayyih
- Faculty of Pharmacy, Mutah University, Al Karak, 61710, Jordan
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44
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Wang J, Wilson RS, Aristilde L. Electrostatic coupling and water bridging in adsorption hierarchy of biomolecules at water-clay interfaces. Proc Natl Acad Sci U S A 2024; 121:e2316569121. [PMID: 38330016 PMCID: PMC10873623 DOI: 10.1073/pnas.2316569121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 12/18/2023] [Indexed: 02/10/2024] Open
Abstract
Clay minerals are implicated in the retention of biomolecules within organic matter in many soil environments. Spectroscopic studies have proposed several mechanisms for biomolecule adsorption on clays. Here, we employ molecular dynamics simulations to investigate these mechanisms in hydrated adsorbate conformations of montmorillonite, a smectite-type clay, with ten biomolecules of varying chemistry and structure, including sugars related to cellulose and hemicellulose, lignin-related phenolic acid, and amino acids with different functional groups. Our molecular modeling captures biomolecule-clay and biomolecule-biomolecule interactions that dictate selectivity and competition in adsorption retention and interlayer nanopore trapping, which we determine experimentally by NMR and X-ray diffraction, respectively. Specific adsorbate structures are important in facilitating the electrostatic attraction and Van der Waals energies underlying the hierarchy in biomolecule adsorption. Stabilized by a network of direct and water-bridged hydrogen bonds, favorable electrostatic interactions drive this hierarchy whereby amino acids with positively charged side chains are preferentially adsorbed on the negatively charged clay surface compared to the sugars and carboxylate-rich aromatics and amino acids. With divalent metal cations, our model adsorbate conformations illustrate hydrated metal cation bridging of carboxylate-containing biomolecules to the clay surface, thus explaining divalent cation-promoted adsorption from our experimental data. Adsorption experiments with a mixture of biomolecules reveal selective inhibition in biomolecule adsorption, which our molecular modeling attributes to electrostatic biomolecule-biomolecule pairing that is more energetically favorable than the biomolecule-clay complex. In sum, our findings highlight chemical and structural features that can inform hypotheses for predicting biomolecule adsorption at water-clay interfaces.
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Affiliation(s)
- Jiaxing Wang
- Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL60208
| | - Rebecca S. Wilson
- Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL60208
| | - Ludmilla Aristilde
- Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL60208
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Mathews AP, Shelton WJ, Horta ES, Reddy Damalcheruvu P, Nix JS, Gokden M, Rodriguez A. Operative planning for a functional precision medicine assay of recurrent high-grade glioma: illustrative case. J Neurosurg Case Lessons 2024; 7:CASE23679. [PMID: 38346299 PMCID: PMC10865468 DOI: 10.3171/case23679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 12/19/2023] [Indexed: 02/16/2024]
Abstract
BACKGROUND Functional precision medicine (FPM) represents a personalized and efficacious modality for treating malignant neoplasms. However, acquiring sufficient live tissue to perform FPM analyses is complicated by both difficult identification on imaging and radiation necrosis, particularly in cases of recurrence. The authors describe a case of planning biopsy trajectories for an FPM assay in a patient with recurrent high-grade glioma. OBSERVATIONS A 25-year-old male with a history of recurrent high-grade glioma was scheduled for laser ablation and biopsy with ChemoID assaying after regions of potential recurrence were identified on follow-up imaging. Preoperative magnetic resonance (MR) spectroscopy of the regions showed areas of high choline/creatine ratios within lesions of radiation necrosis, which helped in planning the biopsy trajectories to selectively target malignancies for FPM analysis. ChemoID results showed high tumor susceptibility to lomustine, which was implemented as adjuvant therapy. LESSONS FPM therapy in the setting of recurrence is complicated by radiation necrosis, which can present as malignancy on imaging and interfere with tissue acquisition during biopsy or resection. Thus, operative approaches should be carefully planned with the assistance of imaging modalities such as MR spectroscopy to better ensure effective tissue acquisition for accurate FPM analysis and to promote more definitive treatment of recurrence.
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Affiliation(s)
| | | | | | | | - J. Stephen Nix
- Pathology, University of Arkansas for Medical Sciences, Little Rock, Arkansas
| | - Murat Gokden
- Pathology, University of Arkansas for Medical Sciences, Little Rock, Arkansas
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Pellei M, Del Gobbo J, Caviglia M, Gandin V, Marzano C, Karade DV, Noonikara Poyil A, Dias HVR, Santini C. Synthesis and Investigations of the Antitumor Effects of First-Row Transition Metal(II) Complexes Supported by Two Fluorinated and Non-Fluorinated β-Diketonates. Int J Mol Sci 2024; 25:2038. [PMID: 38396717 PMCID: PMC10889438 DOI: 10.3390/ijms25042038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 01/31/2024] [Accepted: 02/05/2024] [Indexed: 02/25/2024] Open
Abstract
The 3d transition metal (Mn(II), Fe(II), Co(II), Ni(II), Cu(II) and Zn(II)) complexes, supported by anions of sterically demanding β-diketones, 1,3-dimesitylpropane-1,3-dione (HLMes) and 1,3-bis(3,5-bis(trifluoromethyl)phenyl)-3-hydroxyprop-2-en-1-one (HLCF3), were synthesized and evaluated for their antitumor activity. To assess the biological effects of substituents on phenyl moieties, we also synthesized and investigated the analogous metal(II) complexes of the anion of the less bulky 1,3-diphenylpropane-1,3-dione (HLPh) ligand. The compounds [Cu(LCF3)2], [Cu(LMes)2] and ([Zn(LMes)2]) were characterized by X-ray crystallography. The [Cu(LCF3)2] crystallizes with an apical molecule of solvent (THF) and features a rare square pyramidal geometry at the Cu(II) center. The copper(II) and zinc(II) complexes of diketonate ligands, derived from the deprotonated 1,3-dimesitylpropane-1,3-dione (HLMes), adopt a square planar or a tetrahedral geometry at the metal, respectively. We evaluated the antitumor properties of the newly synthesized (Mn(II), Fe(II), Co(II), Ni(II), Cu(II) and Zn(II)) complexes against a series of human tumor cell lines derived from different solid tumors. Except for iron derivatives, cellular studies revealed noteworthy antitumor properties, even towards cancer cells endowed with poor sensitivity to the reference drug cisplatin.
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Affiliation(s)
- Maura Pellei
- School of Science and Technology—Chemistry Division, University of Camerino, Via Madonna delle Carceri (ChIP), Camerino, 62032 Macerata, Italy; (J.D.G.); (C.S.)
| | - Jo’ Del Gobbo
- School of Science and Technology—Chemistry Division, University of Camerino, Via Madonna delle Carceri (ChIP), Camerino, 62032 Macerata, Italy; (J.D.G.); (C.S.)
| | - Miriam Caviglia
- School of Science and Technology—Chemistry Division, University of Camerino, Via Madonna delle Carceri (ChIP), Camerino, 62032 Macerata, Italy; (J.D.G.); (C.S.)
| | - Valentina Gandin
- Department of Pharmaceutical and Pharmacological Sciences, University of Padova, Via Marzolo 5, 35131 Padova, Italy
| | - Cristina Marzano
- Department of Pharmaceutical and Pharmacological Sciences, University of Padova, Via Marzolo 5, 35131 Padova, Italy
| | - Deepika V. Karade
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, P.O. Box 19065, Arlington, TX 76019, USA; (D.V.K.); (H.V.R.D.)
| | - Anurag Noonikara Poyil
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, P.O. Box 19065, Arlington, TX 76019, USA; (D.V.K.); (H.V.R.D.)
| | - H. V. Rasika Dias
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, P.O. Box 19065, Arlington, TX 76019, USA; (D.V.K.); (H.V.R.D.)
| | - Carlo Santini
- School of Science and Technology—Chemistry Division, University of Camerino, Via Madonna delle Carceri (ChIP), Camerino, 62032 Macerata, Italy; (J.D.G.); (C.S.)
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47
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Fatima S, Hussain I, Ahmed S, Afaq MA, Tabish M. Insight into the interaction of isochroman with bovine serum albumin: extensive experimental and computational investigations. J Biomol Struct Dyn 2024:1-15. [PMID: 38319026 DOI: 10.1080/07391102.2024.2310203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 01/19/2024] [Indexed: 02/07/2024]
Abstract
The way therapeutic compounds interact with serum protein provides valuable information on their pharmacokinetics, toxicity, effectiveness, and even their structural-related information. Isochroman (IC) is a phytochemical compound obtained from the leaves of Olea europea plant. The derivatives of IC have various pharmacological properties including antidepressants, antihistamines, antiinflammation, anticonvulsants, appetite depressants, etc. The binding of small molecules to bovine serum albumin (BSA) is useful to ensure their efficacy. Thus, in this study, we have found out the binding mode of IC with BSA using several spectroscopic and in silico studies. UV and fluorescence spectroscopy suggested the complex formation between IC and BSA with a binding constant of 103 M-1. IC resulted in fluorescence quenching in BSA through static mechanism. The microenvironmental and conformational changes in BSA were confirmed using synchronous and three-dimensional studies. Site marker experiment revealed the IC binding in site-III of BSA. The influence of vitamins, metals and β-cyclodextrin (β-CD) on binding constant of IC-BSA complex was also examined. Circular dichroism spectra showed that α-helical of BSA decreased upon interaction with IC. Computational and experimental results were complimentary with one another and assisted in determining the binding sites, nature of bonds and amino acids included in the IC-BSA complex formation.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sana Fatima
- Department of Biochemistry, Faculty of Life Science, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Irfan Hussain
- Department of Biochemistry, Faculty of Life Science, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Shahbaz Ahmed
- Department of Biochemistry, Faculty of Life Science, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Mohd Abuzar Afaq
- Department of Biochemistry, Faculty of Life Science, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Mohammad Tabish
- Department of Biochemistry, Faculty of Life Science, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
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Yuan DF, Liu Y, Trabelsi T, Zhang YR, Li J, Francisco JS, Guo H, Wang LS. Probing the dynamics and bottleneck of the key atmospheric SO 2 oxidation reaction by the hydroxyl radical. Proc Natl Acad Sci U S A 2024; 121:e2314819121. [PMID: 38285944 PMCID: PMC10861908 DOI: 10.1073/pnas.2314819121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 12/29/2023] [Indexed: 01/31/2024] Open
Abstract
SO2 (Sulfur dioxide) is the major precursor to the production of sulfuric acid (H2SO4), contributing to acid rain and atmospheric aerosols. Sulfuric acid formed from SO2 generates light-reflecting sulfate aerosol particles in the atmosphere. This property has prompted recent geoengineering proposals to inject sulfuric acid or its precursors into the Earth's atmosphere to increase the planetary albedo to counteract global warming. SO2 oxidation in the atmosphere by the hydroxyl radical HO to form HOSO2 is a key rate-limiting step in the mechanism for forming acid rain. However, the dynamics of the HO + SO2 → HOSO2 reaction and its slow rate in the atmosphere are poorly understood to date. Herein, we use photoelectron spectroscopy of cryogenically cooled HOSO2- anion to access the neutral HOSO2 radical near the transition state of the HO + SO2 reaction. Spectroscopic and dynamic calculations are conducted on the first ab initio-based full-dimensional potential energy surface to interpret the photoelectron spectra of HOSO2- and to probe the dynamics of the HO + SO2 reaction. In addition to the finding of a unique pre-reaction complex (HO⋯SO2) directly connected to the transition state, dynamic calculations reveal that the accessible phase space for the HO + SO2 → HOSO2 reaction is extremely narrow, forming a key reaction bottleneck and slowing the reaction rate in the atmosphere, despite the low reaction barrier. This study underlines the importance of understanding the full multidimensional potential energy surface to elucidate the dynamics of complex bimolecular reactions involving polyatomic reactants.
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Affiliation(s)
- Dao-Fu Yuan
- Hefei National Research Center for Physical Science at Microscale, University of Science and Technology of China, Hefei230026, China
- Department of Chemistry, Brown University, Providence, RI02912
| | - Yang Liu
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing401331, China
- Department of Chemistry and Chemical Biology, Center for Computational Chemistry, University of New Mexico, Albuquerque, NM87131
| | - Tarek Trabelsi
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, PA19104
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA19104
| | - Yue-Rou Zhang
- Department of Chemistry, Brown University, Providence, RI02912
| | - Jun Li
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing401331, China
| | - Joseph S. Francisco
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, PA19104
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA19104
| | - Hua Guo
- Department of Chemistry and Chemical Biology, Center for Computational Chemistry, University of New Mexico, Albuquerque, NM87131
| | - Lai-Sheng Wang
- Department of Chemistry, Brown University, Providence, RI02912
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49
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Djekic I, Lević S, Smigic N, Bouleau A, Ilijević K, Roganović J, Rakic V. Challenges and potential for detecting and quantifying titanium dioxide in food. J Sci Food Agric 2024. [PMID: 38308592 DOI: 10.1002/jsfa.13356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 01/08/2024] [Accepted: 01/19/2024] [Indexed: 02/05/2024]
Abstract
BACKGROUND Titanium dioxide (TiO2 ) is banned in some countries but its use is still permitted in others. The global food supply chain is therefore challenged with the need to use rapid and reliable testing methods to either detect the presence of TiO2 or to quantify its concentration. The goal of this study was to determine the feasibility of using color, texture profile analysis, Raman microscopy, and X-ray fluorescence (XRF) spectroscopy to detect and quantify TiO2 in fillings used in the pastry and confectionery industry. In this study, two types of fillings were investigated: vanilla based and chocolate based. All fillings were prepared in four different variations - without TiO2 and with three concentrations as follows: 0.25 g*kg-1 , 0.5 g*kg-1 , or 0.75 g*kg-1 TiO2 per sample. The methods were selected for their ability to analyze the samples in a short period of time. RESULTS All of the methods showed moderate to high potential for detecting TiO2 in the samples. The results reveal how TiO2 affects the food matrix color and texture. Use of Raman microscopy confirms its detectability, although concentrations of TiO2 do not follow a pattern. X-ray fluorescence spectroscopy showed the greatest potential as it can not only detect TiO2 but can also quantify its concentration in the samples. CONCLUSIONS The highest potential for quantifying the concentration of this food additive was achieved with XRF. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Ilija Djekic
- Faculty of Agriculture, University of Belgrade, Belgrade, Serbia
| | - Steva Lević
- Faculty of Agriculture, University of Belgrade, Belgrade, Serbia
| | - Nada Smigic
- Faculty of Agriculture, University of Belgrade, Belgrade, Serbia
| | | | | | | | - Vesna Rakic
- Faculty of Agriculture, University of Belgrade, Belgrade, Serbia
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50
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Hare B, Garcia Carcamo RA, Daemen LL, Cheng Y, Getman RB, Sievers C. Poisoning of Pt/γ-Al 2O 3 Aqueous Phase Reforming Catalysts by Ketone and Diketone-Derived Surface Species. ACS Catal 2024; 14:1480-1493. [PMID: 38327647 PMCID: PMC10845116 DOI: 10.1021/acscatal.3c04774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 12/18/2023] [Accepted: 12/18/2023] [Indexed: 02/09/2024]
Abstract
Strong adsorption of ketone and diketone byproducts and their fragmentation products during the aqueous phase reforming of biomass derived oxygenates is believed to be responsible for the deactivation of supported Pt catalysts. This study involves a combined experimental and theoretical approach to demonstrate the interactions of several model di/ketone poisons with Pt/γ-Al2O3 catalysts. Particular di/ketones were selected to reveal the effects of hydroxyl groups (acetone, hydroxyacetone), conjugation with C=C bonds (mesityl oxide), intramolecular distance between carbonyls in diketones (2,3-butanedione, 2,4-pentanedione), and length of terminal alkyl chains (3,4-hexanedione). The formation of adsorbed carbon monoxide (1900-2100 cm-1) as a decarbonylation product was probed using infrared spectroscopy and to calculate the extent of poisoning during subsequent methanol dehydrogenation based on the reduction of the ν(C≡O) band integral relative to experiments in which only methanol was dosed. Small Pt particles appeared less active in decarbonylation and were perhaps poisoned by strongly adsorbed di/ketones on undercoordinated metal sites and bulky conjugated species formed on the γ-Al2O3 support from aldol self-condensation. Larger Pt particles were more resistant to di/ketone poisoning due to higher decarbonylation activity yet still fell short of the expected yield of adsorbed CO from subsequent methanol activity. Vibrational spectra acquired using inelastic neutron scattering showed evidence for strongly binding methyl and acyl groups resulting from di/ketone decarbonylation on a Pt sponge at 250 °C. Adsorption energies and molecular configurations were obtained for di/ketones on a Pt(111) slab using density functional theory, revealing potential descriptors for predicting decarbonylation activity on highly coordinated metal sites. Calculated reaction energies suggest it is energetically favorable to reform surface methyl groups into adsorbed CO and H. However, the rate of this surface reaction is limited by a high activation barrier indicating that either improved APR catalyst designs or regeneration procedures may be necessary.
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Affiliation(s)
- Bryan
J. Hare
- School
of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Ricardo A. Garcia Carcamo
- Department
of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29634, United States
| | - Luke L. Daemen
- Spallation
Neutron Source, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Yongqiang Cheng
- Spallation
Neutron Source, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Rachel B. Getman
- Department
of Chemical and Biomolecular Engineering, Clemson University, Clemson, South Carolina 29634, United States
| | - Carsten Sievers
- School
of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
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