Site dependence of the apparent shape of a molecule in scanning tunneling micoscope images: Benzene on Pt{111}

In Situ Sum Frequency Generation Vibrational Spectroscopy Observation of a Reactive Surface Intermediate during High-Pressure Benzene Hydrogenation

Sum frequency generation surface vibrational spectroscopy and kinetic measurements using gas chromatography have been used to identify a reactive surface intermediate in situ during hydrogenation of benzene on a Pt(111) single crystal surface at Torr pressures. Upon adsorption at 310 K, both chemisorbed and physisorbed benzene coexist on the surface, a result which has not previously been observed. Kinetic measurements show a linear compensation effect for the production of both cyclohexane and cyclohexene. From these data the isokinetic temperature was identified and correlated to the chemisorbed benzene species, which were probed by means of vibrational spectroscopy. Additionally, chemisorbed benzene was determined to be a reactive intermediate, which is critical for hydrogenation.

Substrate-mediated intermolecular interactions: a quantitative single molecule analysis

Long-range intermolecular interactions mediated by the surface are believed to be responsible for many effects in surface science, including molecular ordering, formation of nanostructures, and aligning reactive intermediates in catalysis. Here, we use scanning tunneling microscopy to probe the weak substrate-mediated interactions in benzene overlayers on Au{111} at 4 K. Using an automated procedure to monitor single molecule motion, we are able to quantify the substrate-mediated interaction strength. We explain quantitatively both the kinetics of the benzene motion and the thermodynamics that determine the packing structures benzene adopts in this system in light of these substrate-mediated interactions.

Benzene on Au{111} at 4 K: Monolayer Growth and Tip-Induced Molecular Cascades

Low-temperature scanning tunneling microscopy has been used to characterize the various structures of submonolayer and near-monolayer coverages of benzene (C6H6) on Au[111] at 4 K. At low coverage, benzene is found to adsorb preferentially at the top of the Au monatomic steps and is weakly adsorbed on the terraces. At near-monolayer coverage, benzene was found to form several long-range commensurate overlayer structures that depend on the regions of the reconstructed Au[111] surface, namely a (radical 52 x radical 52)R13.9 degrees structure over the hcp regions and a (radical 133 x radical 133)R17.5 degrees "pinwheel" structure over the fcc regions. Time-lapse imaging revealed concerted cascade motion of the benzene molecules in the (radical 133 x radical 133)R17.5 degrees pinwheel overlayer. We demonstrate that the observed cascade motion is a result of concerted molecular motion and not independent random motion.

Probing the different stages in contacting a single molecular wire

A crucial problem in molecular electronics is the control of the electronic contact between a molecule and its electrodes. As a model system, we investigated the contact between the molecular wire group of a C90H98 (Lander) molecule and the edge of a Cu(111) monatomic step. The reproducible contact and decontact of the wire was obtained by manipulating the Lander with a low temperature scanning tunneling microscope. The electronic standing wave patterns on the Cu(111) surface serve to monitor the local electronic perturbation caused by the interaction of the wire end with the step edge, giving information on the quality of the contact.

Single molecule imaging and vibrational spectroscopy with a chemically modified tip of a scanning tunneling microscope

The tip of a scanning tunneling microscope can be chemically modified by transferring a single molecule from the surface. Such a molecule-terminated tip yields enhanced resolution in topographical imaging of substrate atoms and molecular orbitals of molecules adsorbed on the surface. In addition, vibrational modes are detected in single molecule inelastic electron tunneling spectroscopy which are not observed with a bare tip. These new findings are revealed by transferring a carbon monoxide or an ethylene molecule to the tip and probing single carbon monoxide and oxygen molecules adsorbed on Ag(110) at 13 K.

An approach to long-range electron transfer mechanisms in metalloproteins: in situ scanning tunneling microscopy with submolecular resolution

In situ scanning tunneling microscopy (STM) of redox molecules, in aqueous solution, shows interesting analogies and differences compared with interfacial electrochemical electron transfer (ET) and ET in homogeneous solution. This is because the redox level represents a deep indentation in the tunnel barrier, with possible temporary electronic population. Particular perspectives are that both the bias voltage and the overvoltage relative to a reference electrode can be controlled, reflected in spectroscopic features when the potential variation brings the redox level to cross the Fermi levels of the substrate and tip. The blue copper protein azurin adsorbs on gold(111) via a surface disulfide group. Well resolved in situ STM images show arrays of molecules on the triangular gold(111) terraces. This points to the feasibility of in situ STM of redox metalloproteins directly in their natural aqueous medium. Each structure also shows a central brighter contrast in the constant current mode, indicative of 2- to 4-fold current enhancement compared with the peripheral parts. This supports the notion of tunneling via the redox level of the copper atom and of in situ STM as a new approach to long-range electron tunneling in metalloproteins.

Atomic-Scale Dynamics of a Two-Dimensional Gas-Solid Interface

The interface between a two-dimensional (2D) molecular gas and a 2D molecular solid has been imaged with a low-temperature, ultrahigh-vacuum scanning tunneling microscope. The solid consists of benzene molecules strongly bound to step edges on a Cu{111} surface. Benzene molecules on the Cu{111} terraces move freely as a 2D gas at 77 kelvin. Benzene molecules transiently occupy well-defined adsorption sites at the 1D edge of the 2D solid. Diffusion of molecules between these sites and exchange between the two phases at the interface are observed. On raised terraces of the copper surface, the 2D gas is held in a cage of the solid as in a 2D nanometer-scale gas bulb.