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For: Korzheva N, Mustaev A, Kozlov M, Malhotra A, Nikiforov V, Goldfarb A, Darst SA. A structural model of transcription elongation. Science 2000;289:619-25. [PMID: 10915625 DOI: 10.1126/science.289.5479.619] [Citation(s) in RCA: 316] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
51
RNA polymerase II mutations conferring defects in poly(A) site cleavage and termination in Saccharomyces cerevisiae. G3-GENES GENOMES GENETICS 2013;3:167-80. [PMID: 23390594 PMCID: PMC3564978 DOI: 10.1534/g3.112.004531] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Accepted: 11/27/2012] [Indexed: 01/06/2023]
52
Weixlbaumer A, Leon K, Landick R, Darst SA. Structural basis of transcriptional pausing in bacteria. Cell 2013;152:431-41. [PMID: 23374340 PMCID: PMC3564060 DOI: 10.1016/j.cell.2012.12.020] [Citation(s) in RCA: 123] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2012] [Revised: 11/08/2012] [Accepted: 12/13/2012] [Indexed: 11/20/2022]
53
Drennan A, Kraemer M, Capp M, Gries T, Ruff E, Sheppard C, Wigneshweraraj S, Artsimovitch I, Record MT. Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation. Biochemistry 2012;51:9447-59. [PMID: 23116321 PMCID: PMC3517728 DOI: 10.1021/bi301260u] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
54
Mekler V, Minakhin L, Kuznedelov K, Mukhamedyarov D, Severinov K. RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexes. Nucleic Acids Res 2012;40:11352-62. [PMID: 23087380 PMCID: PMC3526302 DOI: 10.1093/nar/gks973] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
55
Martinez-Rucobo FW, Cramer P. Structural basis of transcription elongation. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2012;1829:9-19. [PMID: 22982352 DOI: 10.1016/j.bbagrm.2012.09.002] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2012] [Revised: 09/06/2012] [Accepted: 09/07/2012] [Indexed: 01/13/2023]
56
RNA polymerase backtracking in gene regulation and genome instability. Cell 2012;149:1438-45. [PMID: 22726433 DOI: 10.1016/j.cell.2012.06.003] [Citation(s) in RCA: 207] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2012] [Indexed: 11/22/2022]
57
Disterer P, Papaioannou I, Evans VC, Simons JP, Owen JS. Oligonucleotide-mediated gene editing is underestimated in cells expressing mutated green fluorescent protein and is positively associated with target protein expression. J Gene Med 2012;14:109-19. [PMID: 22228477 DOI: 10.1002/jgm.1639] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
58
Garst AD, Porter EB, Batey RT. Insights into the regulatory landscape of the lysine riboswitch. J Mol Biol 2012;423:17-33. [PMID: 22771573 DOI: 10.1016/j.jmb.2012.06.038] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2012] [Revised: 06/21/2012] [Accepted: 06/26/2012] [Indexed: 12/11/2022]
59
Brown-Elliott BA, Nash KA, Wallace RJ. Antimicrobial susceptibility testing, drug resistance mechanisms, and therapy of infections with nontuberculous mycobacteria. Clin Microbiol Rev 2012;25:545-82. [PMID: 22763637 PMCID: PMC3416486 DOI: 10.1128/cmr.05030-11] [Citation(s) in RCA: 354] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]  Open
60
Xie P. A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases. Proteins 2012;80:2020-34. [PMID: 22488837 DOI: 10.1002/prot.24090] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Revised: 03/26/2012] [Accepted: 03/30/2012] [Indexed: 11/07/2022]
61
Voliotis M, Cohen N, Molina-París C, Liverpool TB. Proofreading of misincorporated nucleotides in DNA transcription. Phys Biol 2012;9:036002. [PMID: 22551978 DOI: 10.1088/1478-3975/9/3/036002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
62
Dey A, Chatterji D. Tracing the Variation in Physiological Response to Rifampicin Across the Microbial Spectrum. ACTA ACUST UNITED AC 2012. [DOI: 10.4167/jbv.2012.42.2.87] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
63
Castro-Roa D, Zenkin N. In vitro experimental system for analysis of transcription-translation coupling. Nucleic Acids Res 2011;40:e45. [PMID: 22210860 PMCID: PMC3315309 DOI: 10.1093/nar/gkr1262] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
64
Mukhamedyarov D, Makarova KS, Severinov K, Kuznedelov K. Francisella RNA polymerase contains a heterodimer of non-identical α subunits. BMC Mol Biol 2011;12:50. [PMID: 22108176 PMCID: PMC3294249 DOI: 10.1186/1471-2199-12-50] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Accepted: 11/22/2011] [Indexed: 11/11/2022]  Open
65
Peters JM, Vangeloff AD, Landick R. Bacterial transcription terminators: the RNA 3'-end chronicles. J Mol Biol 2011;412:793-813. [PMID: 21439297 PMCID: PMC3622210 DOI: 10.1016/j.jmb.2011.03.036] [Citation(s) in RCA: 242] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2011] [Revised: 03/14/2011] [Accepted: 03/16/2011] [Indexed: 01/01/2023]
66
Pronin SV, Martinez A, Kuznedelov K, Severinov K, Shuman HA, Kozmin SA. Chemical synthesis enables biochemical and antibacterial evaluation of streptolydigin antibiotics. J Am Chem Soc 2011;133:12172-84. [PMID: 21714556 PMCID: PMC3174773 DOI: 10.1021/ja2041964] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
67
Lubkowska L, Maharjan AS, Komissarova N. RNA folding in transcription elongation complex: implication for transcription termination. J Biol Chem 2011;286:31576-85. [PMID: 21730066 DOI: 10.1074/jbc.m111.249359] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
68
A unified model of transcription elongation: what have we learned from single-molecule experiments? Biophys J 2011;100:1157-66. [PMID: 21354388 DOI: 10.1016/j.bpj.2010.12.3734] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2009] [Revised: 11/29/2010] [Accepted: 12/02/2010] [Indexed: 11/20/2022]  Open
69
Proshkin SA, Mironov AS. Regulation of bacterial transcription elongation. Mol Biol 2011. [DOI: 10.1134/s0026893311020154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
70
Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells. J Bacteriol 2011;193:3090-9. [PMID: 21515770 DOI: 10.1128/jb.00086-11] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
71
Kuznedelov K, Semenova E, Knappe TA, Mukhamedyarov D, Srivastava A, Chatterjee S, Ebright RH, Marahiel MA, Severinov K. The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase. J Mol Biol 2011;412:842-8. [PMID: 21396375 DOI: 10.1016/j.jmb.2011.02.060] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2011] [Revised: 02/26/2011] [Accepted: 02/28/2011] [Indexed: 11/24/2022]
72
Jovanovic M, Burrows PC, Bose D, Cámara B, Wiesler S, Zhang X, Wigneshweraraj S, Weinzierl ROJ, Buck M. Activity map of the Escherichia coli RNA polymerase bridge helix. J Biol Chem 2011;286:14469-79. [PMID: 21357417 PMCID: PMC3077646 DOI: 10.1074/jbc.m110.212902] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
73
Klein BJ, Bose D, Baker KJ, Yusoff ZM, Zhang X, Murakami KS. RNA polymerase and transcription elongation factor Spt4/5 complex structure. Proc Natl Acad Sci U S A 2011;108:546-50. [PMID: 21187417 PMCID: PMC3021056 DOI: 10.1073/pnas.1013828108] [Citation(s) in RCA: 127] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
74
Bai L, Wang MD. Comparison of Pause Predictions of Two Sequence-Dependent Transcription Models. JOURNAL OF STATISTICAL MECHANICS (ONLINE) 2010;2010:P12007. [PMID: 22446379 PMCID: PMC3310166 DOI: 10.1088/1742-5468/2010/12/p12007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
75
Opalka N, Brown J, Lane WJ, Twist KAF, Landick R, Asturias FJ, Darst SA. Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. PLoS Biol 2010;8. [PMID: 20856905 PMCID: PMC2939025 DOI: 10.1371/journal.pbio.1000483] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2010] [Accepted: 08/04/2010] [Indexed: 11/25/2022]  Open
76
Pupov DV, Kulbachinskiy AV. Structural dynamics of the active center of multisubunit RNA polymerases during RNA synthesis and proofreading. Mol Biol 2010. [DOI: 10.1134/s0026893310040023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
77
Baharoglu Z, Lestini R, Duigou S, Michel B. RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases. Mol Microbiol 2010;77:324-36. [PMID: 20497334 PMCID: PMC2936116 DOI: 10.1111/j.1365-2958.2010.07208.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
78
Kim H, Lee BS, Tomita M, Kanai A. Transcription-associated mutagenesis increases protein sequence diversity more effectively than does random mutagenesis in Escherichia coli. PLoS One 2010;5:e10567. [PMID: 20479947 PMCID: PMC2866735 DOI: 10.1371/journal.pone.0010567] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2009] [Accepted: 04/19/2010] [Indexed: 01/15/2023]  Open
79
Jin J, Bai L, Johnson DS, Fulbright RM, Kireeva ML, Kashlev M, Wang MD. Synergistic action of RNA polymerases in overcoming the nucleosomal barrier. Nat Struct Mol Biol 2010;17:745-52. [PMID: 20453861 PMCID: PMC2938954 DOI: 10.1038/nsmb.1798] [Citation(s) in RCA: 101] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2009] [Accepted: 03/05/2010] [Indexed: 12/25/2022]
80
Huang Y, Weng X, Russu IM. Structural energetics of the adenine tract from an intrinsic transcription terminator. J Mol Biol 2010;397:677-88. [PMID: 20132823 DOI: 10.1016/j.jmb.2010.01.068] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2009] [Revised: 01/25/2010] [Accepted: 01/27/2010] [Indexed: 11/26/2022]
81
Martínez-Trujillo M, Sánchez-Trujillo A, Ceja V, Ávila-Moreno F, Bermúdez-Cruz RM, Court D, Montañez C. Sequences required for transcription termination at the intrinsic lambdatI terminator. Can J Microbiol 2010;56:168-77. [PMID: 20237579 PMCID: PMC7366390 DOI: 10.1139/w09-123] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
82
Belogurov GA, Sevostyanova A, Svetlov V, Artsimovitch I. Functional regions of the N-terminal domain of the antiterminator RfaH. Mol Microbiol 2010;76:286-301. [PMID: 20132437 PMCID: PMC2871177 DOI: 10.1111/j.1365-2958.2010.07056.x] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
83
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: sequence analysis. J Mol Biol 2010;395:671-85. [PMID: 19895820 PMCID: PMC2813377 DOI: 10.1016/j.jmb.2009.10.062] [Citation(s) in RCA: 135] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2009] [Revised: 10/22/2009] [Accepted: 10/26/2009] [Indexed: 11/21/2022]
84
T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site. Proc Natl Acad Sci U S A 2010;107:2247-52. [PMID: 20133868 DOI: 10.1073/pnas.0907908107] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
85
Liu X, Bushnell DA, Wang D, Calero G, Kornberg RD. Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism. Science 2010;327:206-9. [PMID: 19965383 PMCID: PMC2813267 DOI: 10.1126/science.1182015] [Citation(s) in RCA: 164] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
86
Erie DA, Kennedy SR. Forks, pincers, and triggers: the tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases. Curr Opin Struct Biol 2009;19:708-14. [PMID: 19913407 PMCID: PMC3979713 DOI: 10.1016/j.sbi.2009.10.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2009] [Revised: 10/12/2009] [Accepted: 10/14/2009] [Indexed: 01/22/2023]
87
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: structural analysis. J Mol Biol 2009;395:686-704. [PMID: 19895816 DOI: 10.1016/j.jmb.2009.10.063] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2009] [Revised: 10/24/2009] [Accepted: 10/26/2009] [Indexed: 11/17/2022]
88
Allosteric control of catalysis by the F loop of RNA polymerase. Proc Natl Acad Sci U S A 2009;106:18942-7. [PMID: 19855007 DOI: 10.1073/pnas.0905402106] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
89
The polymerase eta translesion synthesis DNA polymerase acts independently of the mismatch repair system to limit mutagenesis caused by 7,8-dihydro-8-oxoguanine in yeast. Mol Cell Biol 2009;29:5316-26. [PMID: 19635811 DOI: 10.1128/mcb.00422-09] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
90
Nudler E. RNA polymerase active center: the molecular engine of transcription. Annu Rev Biochem 2009;78:335-61. [PMID: 19489723 DOI: 10.1146/annurev.biochem.76.052705.164655] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
91
Andrecka J, Treutlein B, Arcusa MAI, Muschielok A, Lewis R, Cheung ACM, Cramer P, Michaelis J. Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex. Nucleic Acids Res 2009;37:5803-9. [PMID: 19620213 PMCID: PMC2761271 DOI: 10.1093/nar/gkp601] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
92
Rogozina A, Zaychikov E, Buckle M, Heumann H, Sclavi B. DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate. Nucleic Acids Res 2009;37:5390-404. [PMID: 19578065 PMCID: PMC2760793 DOI: 10.1093/nar/gkp560] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
93
Silva JM, Drigo Filho E, Ruggiero JR. Localization and delocalization of energy in a Peyrard-Bishop chain. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2009;29:245-251. [PMID: 19551419 DOI: 10.1140/epje/i2009-10475-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2008] [Revised: 01/28/2009] [Accepted: 05/19/2009] [Indexed: 05/28/2023]
94
Brueckner F, Ortiz J, Cramer P. A movie of the RNA polymerase nucleotide addition cycle. Curr Opin Struct Biol 2009;19:294-9. [PMID: 19481445 DOI: 10.1016/j.sbi.2009.04.005] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2008] [Accepted: 04/07/2009] [Indexed: 01/22/2023]
95
The bacteriophage T4 AsiA protein contacts the beta-flap domain of RNA polymerase. Proc Natl Acad Sci U S A 2009;106:6597-602. [PMID: 19366670 DOI: 10.1073/pnas.0812832106] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
96
Kent T, Kashkina E, Anikin M, Temiakov D. Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases. J Biol Chem 2009;284:13497-13504. [PMID: 19321439 DOI: 10.1074/jbc.m901898200] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
97
G clustering is important for the initiation of transcription-induced R-loops in vitro, whereas high G density without clustering is sufficient thereafter. Mol Cell Biol 2009;29:3124-33. [PMID: 19307304 DOI: 10.1128/mcb.00139-09] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
98
Sclavi B. Opening the DNA at the Promoter; The Energetic Challenge. RNA POLYMERASES AS MOLECULAR MOTORS 2009. [DOI: 10.1039/9781847559982-00038] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
99
Darst S. There and Back Again: A Structural Atlas of RNAP. RNA POLYMERASES AS MOLECULAR MOTORS 2009. [DOI: 10.1039/9781847559982-00001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
100
Xie P. Dynamics of backtracking long pauses of RNA polymerase. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2009;1789:212-9. [DOI: 10.1016/j.bbagrm.2008.11.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2008] [Revised: 11/24/2008] [Accepted: 11/24/2008] [Indexed: 01/22/2023]
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