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For: Tseng CK, Liu HL, Cheng SC. DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps. RNA 2011;17:145-54. [PMID: 21098140 PMCID: PMC3004056 DOI: 10.1261/rna.2459611] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Number Cited by Other Article(s)
51
He Y, Andersen GR, Nielsen KH. The function and architecture of DEAH/RHA helicases. Biomol Concepts 2015;2:315-26. [PMID: 25962039 DOI: 10.1515/bmc.2011.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2011] [Accepted: 05/24/2011] [Indexed: 12/11/2022]  Open
52
Liu YC, Cheng SC. Functional roles of DExD/H-box RNA helicases in Pre-mRNA splicing. J Biomed Sci 2015;22:54. [PMID: 26173448 PMCID: PMC4503299 DOI: 10.1186/s12929-015-0161-z] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 06/29/2015] [Indexed: 01/30/2023]  Open
53
Liang WW, Cheng SC. A novel mechanism for Prp5 function in prespliceosome formation and proofreading the branch site sequence. Genes Dev 2015;29:81-93. [PMID: 25561497 PMCID: PMC4281567 DOI: 10.1101/gad.253708.114] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
54
Tsugeki R, Tanaka-Sato N, Maruyama N, Terada S, Kojima M, Sakakibara H, Okada K. CLUMSY VEIN, the Arabidopsis DEAH-box Prp16 ortholog, is required for auxin-mediated development. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015;81:183-97. [PMID: 25384462 DOI: 10.1111/tpj.12721] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2014] [Revised: 10/29/2014] [Accepted: 10/31/2014] [Indexed: 05/25/2023]
55
Tsugeki R, Terada S. The Arabidopsis ortholog of the DEAH-box ATPase Prp16 influences auxin-mediated development. PLANT SIGNALING & BEHAVIOR 2015;10:e1074369. [PMID: 26237376 PMCID: PMC4883861 DOI: 10.1080/15592324.2015.1074369] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
56
Chen HC, Chang KJ, Su YL, Huang YH, Cheng SC. Structural requirement of Ntc77 for spliceosome activation and first catalytic step. Nucleic Acids Res 2014;42:12261-71. [PMID: 25294830 PMCID: PMC4231770 DOI: 10.1093/nar/gku914] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
57
Hogg R, de Almeida RA, Ruckshanthi JPD, O'Keefe RT. Remodeling of U2-U6 snRNA helix I during pre-mRNA splicing by Prp16 and the NineTeen Complex protein Cwc2. Nucleic Acids Res 2014;42:8008-23. [PMID: 24848011 PMCID: PMC4081067 DOI: 10.1093/nar/gku431] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
58
Ajmal M, Khan MI, Neveling K, Khan YM, Azam M, Waheed NK, Hamel CP, Ben-Yosef T, De Baere E, Koenekoop RK, Collin RWJ, Qamar R, Cremers FPM. A missense mutation in the splicing factor gene DHX38 is associated with early-onset retinitis pigmentosa with macular coloboma. J Med Genet 2014;51:444-8. [PMID: 24737827 DOI: 10.1136/jmedgenet-2014-102316] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
59
Jarmoskaite I, Russell R. RNA helicase proteins as chaperones and remodelers. Annu Rev Biochem 2014;83:697-725. [PMID: 24635478 DOI: 10.1146/annurev-biochem-060713-035546] [Citation(s) in RCA: 198] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
60
Wlodaver AM, Staley JP. The DExD/H-box ATPase Prp2p destabilizes and proofreads the catalytic RNA core of the spliceosome. RNA (NEW YORK, N.Y.) 2014;20:282-94. [PMID: 24442613 PMCID: PMC3923124 DOI: 10.1261/rna.042598.113] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2013] [Accepted: 10/30/2013] [Indexed: 05/25/2023]
61
Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing. Nat Struct Mol Biol 2013;20:1450-7. [PMID: 24240612 PMCID: PMC3867266 DOI: 10.1038/nsmb.2704] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Accepted: 09/27/2013] [Indexed: 12/31/2022]
62
Christian H, Hofele RV, Urlaub H, Ficner R. Insights into the activation of the helicase Prp43 by biochemical studies and structural mass spectrometry. Nucleic Acids Res 2013;42:1162-79. [PMID: 24165877 PMCID: PMC3902948 DOI: 10.1093/nar/gkt985] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
63
Ohrt T, Odenwälder P, Dannenberg J, Prior M, Warkocki Z, Schmitzová J, Karaduman R, Gregor I, Enderlein J, Fabrizio P, Lührmann R. Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system. RNA (NEW YORK, N.Y.) 2013;19:902-15. [PMID: 23685439 PMCID: PMC3683925 DOI: 10.1261/rna.039024.113] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Accepted: 04/08/2013] [Indexed: 05/04/2023]
64
Koodathingal P, Staley JP. Splicing fidelity: DEAD/H-box ATPases as molecular clocks. RNA Biol 2013;10:1073-9. [PMID: 23770752 PMCID: PMC3849154 DOI: 10.4161/rna.25245] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 05/29/2013] [Accepted: 06/01/2013] [Indexed: 12/28/2022]  Open
65
Tseng CK, Cheng SC. The spliceosome catalyzes debranching in competition with reverse of the first chemical reaction. RNA (NEW YORK, N.Y.) 2013;19:971-81. [PMID: 23681507 PMCID: PMC3683931 DOI: 10.1261/rna.038638.113] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
66
Single-molecule colocalization FRET evidence that spliceosome activation precedes stable approach of 5' splice site and branch site. Proc Natl Acad Sci U S A 2013;110:6783-8. [PMID: 23569281 DOI: 10.1073/pnas.1219305110] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
67
Kannan R, Hartnett S, Voelker RB, Berglund JA, Staley JP, Baumann P. Intronic sequence elements impede exon ligation and trigger a discard pathway that yields functional telomerase RNA in fission yeast. Genes Dev 2013;27:627-38. [PMID: 23468430 DOI: 10.1101/gad.212738.112] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
68
Yang F, Wang XY, Zhang ZM, Pu J, Fan YJ, Zhou J, Query CC, Xu YZ. Splicing proofreading at 5' splice sites by ATPase Prp28p. Nucleic Acids Res 2013;41:4660-70. [PMID: 23462954 PMCID: PMC3632134 DOI: 10.1093/nar/gkt149] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
69
A weak spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing. Mol Cell Biol 2013;33:1746-55. [PMID: 23438600 DOI: 10.1128/mcb.00035-13] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
70
Chang TH, Tung L, Yeh FL, Chen JH, Chang SL. Functions of the DExD/H-box proteins in nuclear pre-mRNA splicing. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2013;1829:764-74. [PMID: 23454554 DOI: 10.1016/j.bbagrm.2013.02.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Revised: 02/05/2013] [Accepted: 02/13/2013] [Indexed: 01/09/2023]
71
Kim B, Kang S, Kim SJ. Genome-wide pathway analysis reveals different signaling pathways between secreted lactoferrin and intracellular delta-lactoferrin. PLoS One 2013;8:e55338. [PMID: 23383159 PMCID: PMC3559342 DOI: 10.1371/journal.pone.0055338] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2012] [Accepted: 12/21/2012] [Indexed: 11/27/2022]  Open
72
Cordin O, Beggs JD. RNA helicases in splicing. RNA Biol 2012;10:83-95. [PMID: 23229095 DOI: 10.4161/rna.22547] [Citation(s) in RCA: 91] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
73
Link of NTR-mediated spliceosome disassembly with DEAH-box ATPases Prp2, Prp16, and Prp22. Mol Cell Biol 2012;33:514-25. [PMID: 23166295 DOI: 10.1128/mcb.01093-12] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
74
Functional roles of protein splicing factors. Biosci Rep 2012;32:345-59. [PMID: 22762203 PMCID: PMC3392075 DOI: 10.1042/bsr20120007] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
75
The interaction of Prp2 with a defined region of the intron is required for the first splicing reaction. Mol Cell Biol 2012;32:5056-66. [PMID: 23071087 DOI: 10.1128/mcb.01109-12] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
76
Coltri PP, Oliveira CC. Cwc24p is a general Saccharomyces cerevisiae splicing factor required for the stable U2 snRNP binding to primary transcripts. PLoS One 2012;7:e45678. [PMID: 23029180 PMCID: PMC3454408 DOI: 10.1371/journal.pone.0045678] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2012] [Accepted: 08/23/2012] [Indexed: 12/31/2022]  Open
77
Singh PK, Kanodia S, Dandin CJ, Vijayraghavan U, Malhotra P. Plasmodium falciparum Prp16 homologue and its role in splicing. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2012;1819:1186-99. [PMID: 22982196 DOI: 10.1016/j.bbagrm.2012.08.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 08/29/2012] [Accepted: 08/30/2012] [Indexed: 01/25/2023]
78
Semlow DR, Staley JP. Staying on message: ensuring fidelity in pre-mRNA splicing. Trends Biochem Sci 2012;37:263-73. [PMID: 22564363 DOI: 10.1016/j.tibs.2012.04.001] [Citation(s) in RCA: 89] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2011] [Revised: 02/23/2012] [Accepted: 04/03/2012] [Indexed: 12/28/2022]
79
Hegele A, Kamburov A, Grossmann A, Sourlis C, Wowro S, Weimann M, Will CL, Pena V, Lührmann R, Stelzl U. Dynamic protein-protein interaction wiring of the human spliceosome. Mol Cell 2012;45:567-80. [PMID: 22365833 DOI: 10.1016/j.molcel.2011.12.034] [Citation(s) in RCA: 302] [Impact Index Per Article: 23.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Revised: 11/01/2011] [Accepted: 12/12/2011] [Indexed: 12/12/2022]
80
Cordin O, Hahn D, Beggs JD. Structure, function and regulation of spliceosomal RNA helicases. Curr Opin Cell Biol 2012;24:431-8. [PMID: 22464735 DOI: 10.1016/j.ceb.2012.03.004] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2011] [Revised: 02/12/2012] [Accepted: 03/08/2012] [Indexed: 01/24/2023]
81
Horowitz DS. The mechanism of the second step of pre-mRNA splicing. WILEY INTERDISCIPLINARY REVIEWS-RNA 2011;3:331-50. [PMID: 22012849 DOI: 10.1002/wrna.112] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
82
Tuteja R. Helicases involved in splicing from malaria parasite Plasmodium falciparum. Parasitol Int 2011;60:335-40. [PMID: 21996352 DOI: 10.1016/j.parint.2011.09.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2011] [Revised: 09/14/2011] [Accepted: 09/18/2011] [Indexed: 02/06/2023]
83
Horowitz DS. The splice is right: guarantors of fidelity in pre-mRNA splicing. RNA (NEW YORK, N.Y.) 2011;17:551-4. [PMID: 21357751 PMCID: PMC3062167 DOI: 10.1261/rna.2577511] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
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