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For: Zheng CL, Fu XD, Gribskov M. Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse. RNA 2005;11:1777-87. [PMID: 16251388 PMCID: PMC1370866 DOI: 10.1261/rna.2660805] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Number Cited by Other Article(s)
51
Intrasplicing coordinates alternative first exons with alternative splicing in the protein 4.1R gene. EMBO J 2007;27:122-31. [PMID: 18079699 DOI: 10.1038/sj.emboj.7601957] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2007] [Accepted: 11/19/2007] [Indexed: 11/08/2022]  Open
52
Krom N, Recla J, Ramakrishna W. Analysis of genes associated with retrotransposons in the rice genome. Genetica 2007;134:297-310. [PMID: 18066688 DOI: 10.1007/s10709-007-9237-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2007] [Accepted: 11/28/2007] [Indexed: 12/24/2022]
53
Fahey ME, Higgins DG. Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis. J Mol Evol 2007;65:349-57. [PMID: 17763878 DOI: 10.1007/s00239-007-9015-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2007] [Accepted: 07/06/2007] [Indexed: 10/22/2022]
54
Rahman M, Nara H, Onoda T, Araki A, Li J, Hoshino T, Asao H. Cloning and characterization of an isoform of interleukin-21. FEBS Lett 2007;581:4001-9. [PMID: 17673207 DOI: 10.1016/j.febslet.2007.07.034] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2007] [Revised: 07/01/2007] [Accepted: 07/16/2007] [Indexed: 11/18/2022]
55
Garg K, Green P. Differing patterns of selection in alternative and constitutive splice sites. Genome Res 2007;17:1015-22. [PMID: 17556528 PMCID: PMC1899112 DOI: 10.1101/gr.6347907] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
56
Sequence features responsible for intron retention in human. BMC Genomics 2007;8:59. [PMID: 17324281 PMCID: PMC1831480 DOI: 10.1186/1471-2164-8-59] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2006] [Accepted: 02/26/2007] [Indexed: 11/10/2022]  Open
57
Xing Y, Lee C. Relating alternative splicing to proteome complexity and genome evolution. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2007;623:36-49. [PMID: 18380339 DOI: 10.1007/978-0-387-77374-2_3] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
58
Zhang XHF, Chasin LA. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. Proc Natl Acad Sci U S A 2006;103:13427-32. [PMID: 16938881 PMCID: PMC1569180 DOI: 10.1073/pnas.0603042103] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
59
Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G. Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers. Mol Cell 2006;22:769-781. [PMID: 16793546 DOI: 10.1016/j.molcel.2006.05.008] [Citation(s) in RCA: 239] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2005] [Revised: 04/06/2006] [Accepted: 05/03/2006] [Indexed: 12/11/2022]
60
Buratti E, Baralle M, Baralle FE. Defective splicing, disease and therapy: searching for master checkpoints in exon definition. Nucleic Acids Res 2006;34:3494-510. [PMID: 16855287 PMCID: PMC1524908 DOI: 10.1093/nar/gkl498] [Citation(s) in RCA: 168] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2006] [Revised: 06/27/2006] [Accepted: 06/28/2006] [Indexed: 12/25/2022]  Open
61
Xing Y, Lee C. Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes. Nat Rev Genet 2006;7:499-509. [PMID: 16770337 DOI: 10.1038/nrg1896] [Citation(s) in RCA: 210] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
62
Li HR, Wang-Rodriguez J, Nair TM, Yeakley JM, Kwon YS, Bibikova M, Zheng C, Zhou L, Zhang K, Downs T, Fu XD, Fan JB. Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Res 2006;66:4079-88. [PMID: 16618727 DOI: 10.1158/0008-5472.can-05-4264] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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