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For: Serghiou S, Contopoulos-Ioannidis DG, Boyack KW, Riedel N, Wallach JD, Ioannidis JPA. Assessment of transparency indicators across the biomedical literature: How open is open? PLoS Biol 2021;19:e3001107. [PMID: 33647013 PMCID: PMC7951980 DOI: 10.1371/journal.pbio.3001107] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 03/11/2021] [Accepted: 01/19/2021] [Indexed: 12/16/2022]  Open
Number Cited by Other Article(s)
51
Raittio E, Sofi-Mahmudi A, Uribe SE. Research transparency in dental research: A programmatic analysis. Eur J Oral Sci 2023;131:e12908. [PMID: 36482006 PMCID: PMC10108147 DOI: 10.1111/eos.12908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 11/14/2022] [Indexed: 12/13/2022]
52
Serghiou S, Axfors C, Ioannidis JPA. Lessons learnt from registration of biomedical research. Nat Hum Behav 2023;7:9-12. [PMID: 36604496 DOI: 10.1038/s41562-022-01499-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
53
Hamilton DG, Page MJ, Finch S, Everitt S, Fidler F. How often do cancer researchers make their data and code available and what factors are associated with sharing? BMC Med 2022;20:438. [PMID: 36352426 PMCID: PMC9646258 DOI: 10.1186/s12916-022-02644-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 10/31/2022] [Indexed: 11/11/2022]  Open
54
Zavalis EA, Ioannidis JPA. A meta-epidemiological assessment of transparency indicators of infectious disease models. PLoS One 2022;17:e0275380. [PMID: 36206207 PMCID: PMC9543956 DOI: 10.1371/journal.pone.0275380] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 09/15/2022] [Indexed: 01/04/2023]  Open
55
Vallet N, Michonneau D, Tournier S. Toward practical transparent verifiable and long-term reproducible research using Guix. Sci Data 2022;9:597. [PMID: 36195618 PMCID: PMC9532446 DOI: 10.1038/s41597-022-01720-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 09/26/2022] [Indexed: 11/09/2022]  Open
56
DeVito NJ, Morton C, Cashin AG, Richards GC, Lee H. Sharing study materials in health and medical research. BMJ Evid Based Med 2022:bmjebm-2022-111987. [PMID: 36162960 DOI: 10.1136/bmjebm-2022-111987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/03/2022] [Indexed: 11/04/2022]
57
Cadwallader L, Hrynaszkiewicz I. A survey of researchers' code sharing and code reuse practices, and assessment of interactive notebook prototypes. PeerJ 2022;10:e13933. [PMID: 36032954 PMCID: PMC9406794 DOI: 10.7717/peerj.13933] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 08/01/2022] [Indexed: 01/19/2023]  Open
58
Raittio E, Sofi-Mahmudi A, Shamsoddin E. The use of the phrase "data not shown" in dental research. PLoS One 2022;17:e0272695. [PMID: 35944050 PMCID: PMC9362922 DOI: 10.1371/journal.pone.0272695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 07/15/2022] [Indexed: 11/19/2022]  Open
59
Hansford HJ, Cashin AG, Bagg MK, Wewege MA, Ferraro MC, Kianersi S, Mayo-Wilson E, Grant SP, Toomey E, Skinner IW, McAuley JH, Lee H, Jones MD. Feasibility of an Audit and Feedback Intervention to Facilitate Journal Policy Change Towards Greater Promotion of Transparency and Openness in Sports Science Research. SPORTS MEDICINE - OPEN 2022;8:101. [PMID: 35932429 PMCID: PMC9357245 DOI: 10.1186/s40798-022-00496-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 07/21/2022] [Indexed: 11/10/2022]
60
Hardwicke TE, Thibault RT, Kosie JE, Tzavella L, Bendixen T, Handcock SA, Köneke VE, Ioannidis JPA. Post-publication critique at top-ranked journals across scientific disciplines: a cross-sectional assessment of policies and practice. ROYAL SOCIETY OPEN SCIENCE 2022;9:220139. [PMID: 36039285 PMCID: PMC9399707 DOI: 10.1098/rsos.220139] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
61
Replacing bar graphs of continuous data with more informative graphics: Are we making progress? Clin Sci (Lond) 2022;136:1139-1156. [PMID: 35822444 PMCID: PMC9366861 DOI: 10.1042/cs20220287] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 07/04/2022] [Accepted: 07/12/2022] [Indexed: 11/17/2022]
62
Menke J, Eckmann P, Ozyurt IB, Roelandse M, Anderson N, Grethe J, Gamst A, Bandrowski A. Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality. J Med Internet Res 2022;24:e37324. [PMID: 35759334 PMCID: PMC9274430 DOI: 10.2196/37324] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 05/10/2022] [Accepted: 05/23/2022] [Indexed: 12/11/2022]  Open
63
Schulz R, Barnett A, Bernard R, Brown NJL, Byrne JA, Eckmann P, Gazda MA, Kilicoglu H, Prager EM, Salholz-Hillel M, Ter Riet G, Vines T, Vorland CJ, Zhuang H, Bandrowski A, Weissgerber TL. Is the future of peer review automated? BMC Res Notes 2022;15:203. [PMID: 35690782 PMCID: PMC9188010 DOI: 10.1186/s13104-022-06080-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 05/18/2022] [Indexed: 12/19/2022]  Open
64
Uribe SE, Sofi-Mahmudi A, Raittio E, Maldupa I, Vilne B. Dental Research Data Availability and Quality According to the FAIR Principles. J Dent Res 2022;101:1307-1313. [PMID: 35656591 PMCID: PMC9516597 DOI: 10.1177/00220345221101321] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
65
de Ridder J. How to trust a scientist. STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE 2022;93:11-20. [PMID: 35247820 DOI: 10.1016/j.shpsa.2022.02.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 02/07/2022] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
66
Osborne C, Norris E. Pre-registration as behaviour: developing an evidence-based intervention specification to increase pre-registration uptake by researchers using the Behaviour Change Wheel. COGENT PSYCHOLOGY 2022. [DOI: 10.1080/23311908.2022.2066304] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
67
Sofi-Mahmudi A, Raittio E. Transparency of COVID-19-Related Research in Dental Journals. FRONTIERS IN ORAL HEALTH 2022;3:871033. [PMID: 35464778 PMCID: PMC9019132 DOI: 10.3389/froh.2022.871033] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 03/14/2022] [Indexed: 11/13/2022]  Open
68
Smith JA, Sandbrink JB. Biosecurity in an age of open science. PLoS Biol 2022;20:e3001600. [PMID: 35421093 PMCID: PMC9009689 DOI: 10.1371/journal.pbio.3001600] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
69
White NM, Balasubramaniam T, Nayak R, Barnett AG. An observational analysis of the trope "A p-value of < 0.05 was considered statistically significant" and other cut-and-paste statistical methods. PLoS One 2022;17:e0264360. [PMID: 35263374 PMCID: PMC8906599 DOI: 10.1371/journal.pone.0264360] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 02/08/2022] [Indexed: 11/19/2022]  Open
70
Heinl C, Scholman-Végh AMD, Mellor D, Schönfelder G, Strech D, Chamuleau S, Bert B. Declaration of common standards for the preregistration of animal research-speeding up the scientific progress. PNAS NEXUS 2022;1:pgac016. [PMID: 36712788 PMCID: PMC9802105 DOI: 10.1093/pnasnexus/pgac016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 02/09/2022] [Accepted: 02/23/2022] [Indexed: 02/01/2023]
71
Data and code availability statements in systematic reviews of interventions were often missing or inaccurate: a content analysis. J Clin Epidemiol 2022;147:1-10. [DOI: 10.1016/j.jclinepi.2022.03.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 02/22/2022] [Accepted: 03/03/2022] [Indexed: 11/30/2022]
72
Meid AD. Teaching reproducible research for medical students and postgraduate pharmaceutical scientists. BMC Res Notes 2021;14:445. [PMID: 34886890 PMCID: PMC8656016 DOI: 10.1186/s13104-021-05862-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 11/26/2021] [Indexed: 11/10/2022]  Open
73
Errington TM, Denis A, Perfito N, Iorns E, Nosek BA. Challenges for assessing replicability in preclinical cancer biology. eLife 2021. [DOI: 10.10.7554/elife.67995] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
74
Errington TM, Denis A, Perfito N, Iorns E, Nosek BA. Challenges for assessing replicability in preclinical cancer biology. eLife 2021;10:e67995. [PMID: 34874008 PMCID: PMC8651289 DOI: 10.7554/elife.67995] [Citation(s) in RCA: 102] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 07/20/2021] [Indexed: 02/07/2023]  Open
75
Errington TM, Mathur M, Soderberg CK, Denis A, Perfito N, Iorns E, Nosek BA. Investigating the replicability of preclinical cancer biology. eLife 2021;10:e71601. [PMID: 34874005 PMCID: PMC8651293 DOI: 10.7554/elife.71601] [Citation(s) in RCA: 95] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 10/16/2021] [Indexed: 12/18/2022]  Open
76
Hamilton DG, Fraser H, Fidler F, McDonald S, Rowhani-Farid A, Hong K, Page MJ. Rates and predictors of data and code sharing in the medical and health sciences: Protocol for a systematic review and individual participant data meta-analysis. F1000Res 2021;10:491. [PMID: 34631024 PMCID: PMC8485098 DOI: 10.12688/f1000research.53874.2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/01/2021] [Indexed: 01/06/2023]  Open
77
Burke NL, Frank GKW, Hilbert A, Hildebrandt T, Klump KL, Thomas JJ, Wade TD, Walsh BT, Wang SB, Weissman RS. Open science practices for eating disorders research. Int J Eat Disord 2021;54:1719-1729. [PMID: 34555191 PMCID: PMC9107337 DOI: 10.1002/eat.23607] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 09/02/2021] [Accepted: 09/03/2021] [Indexed: 11/07/2022]
78
Naudet F, Siebert M, Pellen C, Gaba J, Axfors C, Cristea I, Danchev V, Mansmann U, Ohmann C, Wallach JD, Moher D, Ioannidis JPA. Medical journal requirements for clinical trial data sharing: Ripe for improvement. PLoS Med 2021;18:e1003844. [PMID: 34695113 PMCID: PMC8575305 DOI: 10.1371/journal.pmed.1003844] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Revised: 11/08/2021] [Indexed: 11/18/2022]  Open
79
Baždarić K, Vrkić I, Arh E, Mavrinac M, Gligora Marković M, Bilić-Zulle L, Stojanovski J, Malički M. Attitudes and practices of open data, preprinting, and peer-review-A cross sectional study on Croatian scientists. PLoS One 2021;16:e0244529. [PMID: 34153041 PMCID: PMC8216536 DOI: 10.1371/journal.pone.0244529] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 05/10/2021] [Indexed: 11/30/2022]  Open
80
Tzanetakis GN, Koletsi D. Trial registration and selective outcome reporting in Endodontic Research: Evidence over a 5-year period. Int Endod J 2021;54:1794-1803. [PMID: 34013569 DOI: 10.1111/iej.13573] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 05/14/2021] [Accepted: 05/17/2021] [Indexed: 12/19/2022]
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