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Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Økstad OA, Kolstø AB, Fleischmann RD, Peterson SN. Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence. Genomics 2011; 98:26-39. [PMID: 21447378 PMCID: PMC3129444 DOI: 10.1016/j.ygeno.2011.03.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2010] [Revised: 02/08/2011] [Accepted: 03/21/2011] [Indexed: 12/25/2022]
Abstract
Here we report the use of a multi-genome DNA microarray to investigate the genome diversity of Bacillus cereus group members and elucidate the events associated with the emergence of Bacillus anthracis the causative agent of anthrax-a lethal zoonotic disease. We initially performed directed genome sequencing of seven diverse B. cereus strains to identify novel sequences encoded in those genomes. The novel genes identified, combined with those publicly available, allowed the design of a "species" DNA microarray. Comparative genomic hybridization analyses of 41 strains indicate that substantial heterogeneity exists with respect to the genes comprising functional role categories. While the acquisition of the plasmid-encoded pathogenicity island (pXO1) and capsule genes (pXO2) represents a crucial landmark dictating the emergence of B. anthracis, the evolution of this species and its close relatives was associated with an overall shift in the fraction of genes devoted to energy metabolism, cellular processes, transport, as well as virulence.
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Affiliation(s)
- Leka Papazisi
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | | | - Shashikala Ratnayake
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Geoff R. Bock
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Brian G. Remortel
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Lakshmi Appalla
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Jia Liu
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Tatiana Dracheva
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - John C. Braisted
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Shamira Shallom
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Benham Jarrahi
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Erik Snesrud
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Susie Ahn
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Qiang Sun
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Jenifer Rilstone
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Ole Andreas Økstad
- Laboratory for Microbial Dynamics (LaMDa) Department of Pharmaceutical Biosciences University of Oslo P.O. Box 1068 Blindern, 0316 Oslo, Norway
| | - Anne-Brit Kolstø
- Laboratory for Microbial Dynamics (LaMDa) Department of Pharmaceutical Biosciences University of Oslo P.O. Box 1068 Blindern, 0316 Oslo, Norway
| | - Robert D. Fleischmann
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
| | - Scott N. Peterson
- Pathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), 9712 Medical Center Drive, Rockville, MD 20850, USA
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119
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Saha B, Islam MM, Paul S, Samanta S, Ray S, Santra CR, Choudhury SR, Dey B, Das A, Ghosh S, Mukhopadhyay S, Kumar GS, Karmakar P. DNA Binding Ability and Hydrogen Peroxide Induced Nuclease Activity of a Novel Cu(II) Complex with Malonate as the Primary Ligand and Protonated 2-Amino-4-picoline as the Counterion. J Phys Chem B 2010; 114:5851-61. [PMID: 20380411 DOI: 10.1021/jp909127a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Biswarup Saha
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Md. Maidul Islam
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Susmita Paul
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Saheli Samanta
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Shayoni Ray
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Chitta Ranjan Santra
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Somnath Ray Choudhury
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Biswajit Dey
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Amrita Das
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Somnath Ghosh
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Subrata Mukhopadhyay
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Gopinatha Suresh Kumar
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
| | - Parimal Karmakar
- Department of Life Science and Biotechnology, Jadavpur University, 188, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Biophysical Chemistry Laboratory, Indian Institute of Chemical Biology, CSIR, 4, Raja S.C. Mullick Road, Kolkata 700 032, West Bengal, India, Department of Chemistry, Aliah University, DN-41, & EN-15, Sector V, Salt Lake City, Kolkata 700091, West Bengal, India, Department of Chemistry, Netaji Nagar Day College, NSC Bose Road, Regent Estate, Kolkata 700 092, West Bengal,
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