101
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Svatoš A. Single-cell metabolomics comes of age: new developments in mass spectrometry profiling and imaging. Anal Chem 2011; 83:5037-44. [DOI: 10.1021/ac2003592] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Aleš Svatoš
- Max Planck Institute for Chemical Ecology (Germany)
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102
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Spraggins JM, Caprioli RM. High-speed MALDI-TOF imaging mass spectrometry: rapid ion image acquisition and considerations for next generation instrumentation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2011; 22:1022-31. [PMID: 21953043 PMCID: PMC3514015 DOI: 10.1007/s13361-011-0121-0] [Citation(s) in RCA: 121] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2011] [Revised: 03/01/2011] [Accepted: 03/01/2011] [Indexed: 05/04/2023]
Abstract
A prototype matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometer has been used for high-speed ion image acquisition. The instrument incorporates a Nd:YLF solid state laser capable of pulse repetition rates up to 5 kHz and continuous laser raster sampling for high-throughput data collection. Lipid ion images of a sagittal rat brain tissue section were collected in 10 min with an effective acquisition rate of roughly 30 pixels/s. These results represent more than a 10-fold increase in throughput compared with current commercially available instrumentation. Experiments aimed at improving conditions for continuous laser raster sampling for imaging are reported, highlighting proper laser repetition rates and stage velocities to avoid signal degradation from significant oversampling. As new high spatial resolution and large sample area applications present themselves, the development of high-speed microprobe MALDI imaging mass spectrometry is essential to meet the needs of those seeking new technologies for rapid molecular imaging.
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Affiliation(s)
- Jeffrey M. Spraggins
- Mass Spectrometry Research Center, Vanderbilt University Medical Center, Nashville, TN, USA
- Department of Biochemistry, Chemistry, Pharmacology, and Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
| | - Richard M. Caprioli
- Mass Spectrometry Research Center, Vanderbilt University Medical Center, Nashville, TN, USA
- Department of Biochemistry, Chemistry, Pharmacology, and Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
- Vanderbilt University School of Medicine, 465 21st Avenue South, MRB III Suite 9160, Nashville, TN 37232, USA
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103
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Yang YL, Xu Y, Kersten RD, Liu WT, Meehan MJ, Moore BS, Bandeira N, Dorrestein PC. Connecting chemotypes and phenotypes of cultured marine microbial assemblages by imaging mass spectrometry. Angew Chem Int Ed Engl 2011; 50:5839-42. [PMID: 21574228 DOI: 10.1002/anie.201101225] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2011] [Revised: 04/05/2011] [Indexed: 01/14/2023]
Affiliation(s)
- Yu-Liang Yang
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, USA
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104
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Yang YL, Xu Y, Kersten RD, Liu WT, Meehan MJ, Moore BS, Bandeira N, Dorrestein PC. Connecting Chemotypes and Phenotypes of Cultured Marine Microbial Assemblages by Imaging Mass Spectrometry. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201101225] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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105
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Urban PL, Chang CH, Wu JT, Chen YC. Microscale MALDI Imaging of Outer-Layer Lipids in Intact Egg Chambers from Drosophila melanogaster. Anal Chem 2011; 83:3918-25. [DOI: 10.1021/ac200481j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Pawel L. Urban
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu, Taiwan
| | - Chia-Hsien Chang
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu, Taiwan
| | - June-Tai Wu
- Department of Medical Research, National Taiwan University Hospital, Taipei, Taiwan
| | - Yu-Chie Chen
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu, Taiwan
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106
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Visualization of phosphatidylcholine, lysophosphatidylcholine and sphingomyelin in mouse tongue body by matrix-assisted laser desorption/ionization imaging mass spectrometry. Anal Bioanal Chem 2011; 400:1913-21. [PMID: 21472363 DOI: 10.1007/s00216-011-4924-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2010] [Revised: 03/13/2011] [Accepted: 03/16/2011] [Indexed: 01/06/2023]
Abstract
The mammalian tongue is one of the most important organs during food uptake because it is helpful for mastication and swallowing. In addition, taste receptors are present on the surface of the tongue. Lipids are the second most abundant biomolecules after water in the tongue. Lipids such as phosphatidylcholine (PC), lysophosphatidylcholine (LPC) and sphingomyelin (SM) are considered to play fundamental roles in the mediation of cell signaling. Imaging mass spectrometry (IMS) is powerful tool for determining and visualizing the distribution of lipids across sections of dissected tissue. In this study, we identified and visualized the PC, LPC, and SM species in a mouse tongue body section with matrix-assisted laser desorption/ionization (MALDI)-IMS. The ion image constructed from the peaks revealed that docosahexaenoic acid (DHA)-containing PC, LPC, linoleic acid-containing PC and SM (d18:1/16:0), and oleic acid-containing PC were mainly distributed in muscle, connective tissue, stratified epithelium, and the peripheral nerve, respectively. Furthermore, the distribution of SM (d18:1/16:0) corresponded to the distribution of nerve tissue relating to taste in the stratified epithelium. This study represents the first visualization of PC, LPC and SM localization in the mouse tongue body.
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107
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Kaspar S, Peukert M, Svatos A, Matros A, Mock HP. MALDI-imaging mass spectrometry - An emerging technique in plant biology. Proteomics 2011; 11:1840-50. [DOI: 10.1002/pmic.201000756] [Citation(s) in RCA: 164] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2010] [Revised: 01/05/2011] [Accepted: 01/18/2011] [Indexed: 01/23/2023]
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108
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Reindl W, Bowen BP, Balamotis MA, Green JE, Northen TR. Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integr Biol (Camb) 2011; 3:460-7. [PMID: 21212877 PMCID: PMC3495549 DOI: 10.1039/c0ib00091d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The tissue microenvironment critically influences the molecular characteristics of a tumor. However, as tumorous tissue is highly heterogeneous it may harbor various sub-populations with different microenvironments, greatly complicating the unambiguous analysis of tumor biology. Mass spectrometry imaging techniques allow for the direct analysis of tumors in the spatial context of their microenvironment. However, discovery of heterogeneous sub-populations often depends on the use of multivariate statistical methods. While this is routinely used for 2D images, multivariate statistical approaches are rarely seen in the context of 3D images. Here we present the automatic alignment of 2D images recorded by nanostructure-initiator mass spectrometry (NIMS) to reconstruct a 3D model of a mouse mammary tumor. Multivariate statistical analysis was applied to the whole 3D reconstruction at once, revealing distinct tumor regions, an observation that would not have been possible in such clarity through the analysis of isolated 2D sections. These sub-structures were confirmed by H&E and Oil Red O stains. This study shows that the combination of 3D imaging and multivariate statistics can be used to define tumor regions.
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Affiliation(s)
- Wolfgang Reindl
- Department of Bioenergy/GTL & Structural Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
| | - Benjamin P. Bowen
- Department of Bioenergy/GTL & Structural Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
| | - Michael A. Balamotis
- Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
| | - Jeffrey E. Green
- Transgenic Oncogenesis and Genomics Section, Laboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, Maryland, USA
| | - Trent R. Northen
- Department of Bioenergy/GTL & Structural Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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109
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Watrous JD, Alexandrov T, Dorrestein PC. The evolving field of imaging mass spectrometry and its impact on future biological research. JOURNAL OF MASS SPECTROMETRY : JMS 2011; 46:209-22. [PMID: 21322093 PMCID: PMC3303182 DOI: 10.1002/jms.1876] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 10/04/2010] [Accepted: 11/30/2010] [Indexed: 05/20/2023]
Abstract
Within the past decade, imaging mass spectrometry (IMS) has been increasingly recognized as an indispensable technique for studying biological systems. Its rapid evolution has resulted in an impressive array of instrument variations and sample applications, yet the tools and data are largely confined to specialists. It is therefore important that at this junction the IMS community begin to establish IMS as a permanent fixture in life science research thereby making the technology and/or the data approachable by non-mass spectrometrists, leading to further integration into biological and clinical research. In this perspective article, we provide insight into the evolution and current state of IMS and propose some of the directions that IMS could develop in order to stay on course to become one of the most promising new tools in life science research.
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Affiliation(s)
- Jeramie D. Watrous
- Department of Pharmacology and Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California, USA
| | | | - Pieter C. Dorrestein
- Department of Pharmacology and Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California, USA
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, USA
- Center For Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography
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110
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Ye H, Greer T, Li L. From pixel to voxel: a deeper view of biological tissue by 3D mass spectral imaging. Bioanalysis 2011; 3:313-32. [PMID: 21320052 PMCID: PMC3144164 DOI: 10.4155/bio.10.201] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Three dimensional mass spectral imaging (3D MSI) is an exciting field that grants the ability to study a broad mass range of molecular species ranging from small molecules to large proteins by creating lateral and vertical distribution maps of select compounds. Although the general premise behind 3D MSI is simple, factors such as choice of ionization method, sample handling, software considerations and many others must be taken into account for the successful design of a 3D MSI experiment. This review provides a brief overview of ionization methods, sample preparation, software types and technological advancements driving 3D MSI research of a wide range of low- to high-mass analytes. Future perspectives in this field are also provided to conclude that the outlook for 3D MSI is positive and promises ever-growing applications in the biomedical field with continuous developments of this powerful analytical tool.
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Affiliation(s)
- Hui Ye
- Department of Chemistry & School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, WI 53705-2222, USA
| | - Tyler Greer
- Department of Chemistry & School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, WI 53705-2222, USA
| | - Lingjun Li
- Department of Chemistry & School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, WI 53705-2222, USA
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111
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Careri M, Mangia A. Trends in analytical atomic and molecular mass spectrometry in biology and the life sciences. Anal Bioanal Chem 2010; 399:2585-95. [DOI: 10.1007/s00216-010-4585-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2010] [Accepted: 12/06/2010] [Indexed: 12/30/2022]
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112
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Matrix-assisted laser desorption/ionization imaging mass spectrometry. Int J Mol Sci 2010; 11:5040-55. [PMID: 21614190 PMCID: PMC3100838 DOI: 10.3390/ijms11125040] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2010] [Revised: 11/25/2010] [Accepted: 11/27/2010] [Indexed: 12/24/2022] Open
Abstract
Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) is a powerful tool that enables the simultaneous detection and identification of biomolecules in analytes. MALDI-imaging mass spectrometry (MALDI-IMS) is a two-dimensional MALDI-mass spectrometric technique used to visualize the spatial distribution of biomolecules without extraction, purification, separation, or labeling of biological samples. MALDI-IMS has revealed the characteristic distribution of several biomolecules, including proteins, peptides, amino acids, lipids, carbohydrates, and nucleotides, in various tissues. The versatility of MALDI-IMS has opened a new frontier in several fields such as medicine, agriculture, biology, pharmacology, and pathology. MALDI-IMS has a great potential for discovery of unknown biomarkers. In this review, we describe the methodology and applications of MALDI-IMS for biological samples.
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113
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Molecular mass spectrometry imaging in biomedical and life science research. Histochem Cell Biol 2010; 134:423-43. [DOI: 10.1007/s00418-010-0753-3] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/07/2010] [Indexed: 10/18/2022]
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114
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ARAKAWA R, KAWASAKI H. Functionalized Nanoparticles and Nanostructured Surfaces for Surface-Assisted Laser Desorption/Ionization Mass Spectrometry. ANAL SCI 2010; 26:1229-40. [DOI: 10.2116/analsci.26.1229] [Citation(s) in RCA: 127] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Ryuichi ARAKAWA
- Department of Chemistry and Materials Engineering, Faculty of Chemistry, Materials and Bioengineering, Kansai University
| | - Hideya KAWASAKI
- Department of Chemistry and Materials Engineering, Faculty of Chemistry, Materials and Bioengineering, Kansai University
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