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For: Al Mamun AAM, Lombardo MJ, Shee C, Lisewski AM, Gonzalez C, Lin D, Nehring RB, Saint-Ruf C, Gibson JL, Frisch RL, Lichtarge O, Hastings PJ, Rosenberg SM. Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 2012;338:1344-8. [PMID: 23224554 PMCID: PMC3782309 DOI: 10.1126/science.1226683] [Citation(s) in RCA: 169] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Number Cited by Other Article(s)
101
Suppressors of dGTP Starvation in Escherichia coli. J Bacteriol 2017;199:JB.00142-17. [PMID: 28373271 DOI: 10.1128/jb.00142-17] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Accepted: 03/23/2017] [Indexed: 11/20/2022]  Open
102
Cisneros L, Bussey KJ, Orr AJ, Miočević M, Lineweaver CH, Davies P. Ancient genes establish stress-induced mutation as a hallmark of cancer. PLoS One 2017;12:e0176258. [PMID: 28441401 PMCID: PMC5404761 DOI: 10.1371/journal.pone.0176258] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Accepted: 04/08/2017] [Indexed: 02/07/2023]  Open
103
Molina-García L, Moreno-Del Álamo M, Botias P, Martín-Moldes Z, Fernández M, Sánchez-Gorostiaga A, Alonso-Del Valle A, Nogales J, García-Cantalejo J, Giraldo R. Outlining Core Pathways of Amyloid Toxicity in Bacteria with the RepA-WH1 Prionoid. Front Microbiol 2017;8:539. [PMID: 28421043 PMCID: PMC5378768 DOI: 10.3389/fmicb.2017.00539] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Accepted: 03/14/2017] [Indexed: 12/14/2022]  Open
104
Fitzgerald DM, Hastings PJ, Rosenberg SM. Stress-Induced Mutagenesis: Implications in Cancer and Drug Resistance. ANNUAL REVIEW OF CANCER BIOLOGY 2017;1:119-140. [PMID: 29399660 PMCID: PMC5794033 DOI: 10.1146/annurev-cancerbio-050216-121919] [Citation(s) in RCA: 110] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
105
Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution. mSphere 2017;2:mSphere00009-17. [PMID: 28217741 PMCID: PMC5311112 DOI: 10.1128/msphere.00009-17] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Accepted: 01/23/2017] [Indexed: 01/22/2023]  Open
106
Dopson M, Holmes DS, Lazcano M, McCredden TJ, Bryan CG, Mulroney KT, Steuart R, Jackaman C, Watkin ELJ. Multiple Osmotic Stress Responses in Acidihalobacter prosperus Result in Tolerance to Chloride Ions. Front Microbiol 2017;7:2132. [PMID: 28111571 PMCID: PMC5216662 DOI: 10.3389/fmicb.2016.02132] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 12/19/2016] [Indexed: 11/16/2022]  Open
107
Li Y, Heckmann D, Lercher MJ, Maurino VG. Combining genetic and evolutionary engineering to establish C4 metabolism in C3 plants. JOURNAL OF EXPERIMENTAL BOTANY 2017;68:117-125. [PMID: 27660481 DOI: 10.1093/jxb/erw333] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
108
The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress Response. J Bacteriol 2016;198:3296-3308. [PMID: 27698081 PMCID: PMC5116933 DOI: 10.1128/jb.00555-16] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Accepted: 09/22/2016] [Indexed: 12/19/2022]  Open
109
Xia J, Chen LT, Mei Q, Ma CH, Halliday JA, Lin HY, Magnan D, Pribis JP, Fitzgerald DM, Hamilton HM, Richters M, Nehring RB, Shen X, Li L, Bates D, Hastings PJ, Herman C, Jayaram M, Rosenberg SM. Holliday junction trap shows how cells use recombination and a junction-guardian role of RecQ helicase. SCIENCE ADVANCES 2016;2:e1601605. [PMID: 28090586 PMCID: PMC5222578 DOI: 10.1126/sciadv.1601605] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 10/05/2016] [Indexed: 05/05/2023]
110
Michiels JE, Van den Bergh B, Verstraeten N, Michiels J. Molecular mechanisms and clinical implications of bacterial persistence. Drug Resist Updat 2016;29:76-89. [PMID: 27912845 DOI: 10.1016/j.drup.2016.10.002] [Citation(s) in RCA: 117] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
111
Wang KC, Huang CH, Ding SM, Chen CK, Fang HW, Huang MT, Fang SB. Role of yqiC in the Pathogenicity of Salmonella and Innate Immune Responses of Human Intestinal Epithelium. Front Microbiol 2016;7:1614. [PMID: 27777572 PMCID: PMC5056187 DOI: 10.3389/fmicb.2016.01614] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Accepted: 09/27/2016] [Indexed: 01/12/2023]  Open
112
Origins of cancer symposium 2016: exploring tumor complexity. Genes Cancer 2016. [PMCID: PMC5115169 DOI: 10.18632/genesandcancer.119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
113
Sargentini NJ, Gularte NP, Hudman DA. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Mutat Res 2016;793-794:1-14. [PMID: 27718375 DOI: 10.1016/j.mrfmmm.2016.10.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Revised: 09/29/2016] [Accepted: 10/01/2016] [Indexed: 01/21/2023]
114
Ramiro RS, Costa H, Gordo I. Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small-colony variants with increased fitness in vivo and antibiotic collateral sensitivity. Evol Appl 2016;9:994-1004. [PMID: 27606007 PMCID: PMC4999529 DOI: 10.1111/eva.12397] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 05/18/2016] [Indexed: 12/20/2022]  Open
115
McClung DJ, Calixto A, Mosera MN, Kumar R, Neidle EL, Elliott KT. Novel heterologous bacterial system reveals enhanced susceptibility to DNA damage mediated by yqgF, a nearly ubiquitous and often essential gene. MICROBIOLOGY-SGM 2016;162:1808-1821. [PMID: 27527105 DOI: 10.1099/mic.0.000355] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
116
Systematically Altering Bacterial SOS Activity under Stress Reveals Therapeutic Strategies for Potentiating Antibiotics. mSphere 2016;1:mSphere00163-16. [PMID: 27536734 PMCID: PMC4980697 DOI: 10.1128/msphere.00163-16] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Accepted: 07/19/2016] [Indexed: 11/20/2022]  Open
117
Tagel M, Tavita K, Hõrak R, Kivisaar M, Ilves H. A novel papillation assay for the identification of genes affecting mutation rate in Pseudomonas putida and other pseudomonads. Mutat Res 2016;790:41-55. [PMID: 27447898 DOI: 10.1016/j.mrfmmm.2016.06.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Revised: 06/20/2016] [Accepted: 06/22/2016] [Indexed: 06/06/2023]
118
Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities. Appl Microbiol Biotechnol 2016;100:7263-79. [PMID: 27102130 DOI: 10.1007/s00253-016-7532-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 03/28/2016] [Accepted: 04/05/2016] [Indexed: 02/06/2023]
119
Trade-off Mechanisms Shaping the Diversity of Bacteria. Trends Microbiol 2016;24:209-223. [DOI: 10.1016/j.tim.2015.11.009] [Citation(s) in RCA: 107] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2015] [Revised: 11/21/2015] [Accepted: 11/25/2015] [Indexed: 01/20/2023]
120
Staying in Shape: the Impact of Cell Shape on Bacterial Survival in Diverse Environments. Microbiol Mol Biol Rev 2016;80:187-203. [PMID: 26864431 DOI: 10.1128/mmbr.00031-15] [Citation(s) in RCA: 176] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
121
Qin TT, Kang HQ, Ma P, Li PP, Huang LY, Gu B. SOS response and its regulation on the fluoroquinolone resistance. ANNALS OF TRANSLATIONAL MEDICINE 2016;3:358. [PMID: 26807413 DOI: 10.3978/j.issn.2305-5839.2015.12.09] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
122
Srivastava S, Baptista MS. Markovian language model of the DNA and its information content. ROYAL SOCIETY OPEN SCIENCE 2016;3:150527. [PMID: 26909179 PMCID: PMC4736934 DOI: 10.1098/rsos.150527] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 11/26/2015] [Indexed: 05/12/2023]
123
Mielecki D, Sikora A, Wrzesiński M, Nieminuszczy J, Detman A, Żuchniewicz K, Gromadka R, Grzesiuk E. Evaluation of the Escherichia coli HK82 and BS87 strains as tools for AlkB studies. DNA Repair (Amst) 2015;39:34-40. [PMID: 26769230 DOI: 10.1016/j.dnarep.2015.12.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Revised: 12/18/2015] [Accepted: 12/21/2015] [Indexed: 01/26/2023]
124
Liu M, Han X, Xian M, Ding Y, Liu H, Zhao G. Development of a 3-hydroxypropionate resistant Escherichia coli strain. Bioengineered 2015;7:21-7. [PMID: 26709549 DOI: 10.1080/21655979.2015.1122143] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
125
Moore JM, Magnan D, Mojica AK, Núñez MAB, Bates D, Rosenberg SM, Hastings PJ. Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli. Genetics 2015;201:1349-62. [PMID: 26500258 PMCID: PMC4676537 DOI: 10.1534/genetics.115.178970] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 10/18/2015] [Indexed: 01/02/2023]  Open
126
Nehring RB, Gu F, Lin HY, Gibson JL, Blythe MJ, Wilson R, Bravo Núñez MA, Hastings PJ, Louis EJ, Frisch RL, Hu JC, Rosenberg SM. An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli. Nucleic Acids Res 2015;44:e41. [PMID: 26578563 PMCID: PMC4797258 DOI: 10.1093/nar/gkv1131] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Accepted: 10/15/2015] [Indexed: 01/26/2023]  Open
127
Erickson KE, Otoupal PB, Chatterjee A. Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations. ACS Infect Dis 2015;1:555-67. [PMID: 27623410 DOI: 10.1021/acsinfecdis.5b00095] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
128
The external domains of the HIV-1 envelope are a mutational cold spot. Nat Commun 2015;6:8571. [PMID: 26450412 PMCID: PMC4687473 DOI: 10.1038/ncomms9571] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 09/07/2015] [Indexed: 01/27/2023]  Open
129
Helfrich S, Pfeifer E, Krämer C, Sachs CC, Wiechert W, Kohlheyer D, Nöh K, Frunzke J. Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations. Mol Microbiol 2015;98:636-50. [PMID: 26235130 DOI: 10.1111/mmi.13147] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/23/2015] [Indexed: 12/15/2022]
130
Seyfried TN. Cancer as a mitochondrial metabolic disease. Front Cell Dev Biol 2015;3:43. [PMID: 26217661 PMCID: PMC4493566 DOI: 10.3389/fcell.2015.00043] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2015] [Accepted: 06/15/2015] [Indexed: 12/17/2022]  Open
131
Fornelos N, Butala M, Hodnik V, Anderluh G, Bamford JK, Salas M. Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage. Nucleic Acids Res 2015;43:7315-29. [PMID: 26138485 PMCID: PMC4551915 DOI: 10.1093/nar/gkv634] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2015] [Accepted: 06/05/2015] [Indexed: 01/22/2023]  Open
132
Zhu L, Li Y, Cai Z. Development of a stress-induced mutagenesis module for autonomous adaptive evolution of Escherichia coli to improve its stress tolerance. BIOTECHNOLOGY FOR BIOFUELS 2015;8:93. [PMID: 26136829 PMCID: PMC4487801 DOI: 10.1186/s13068-015-0276-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Accepted: 06/18/2015] [Indexed: 06/04/2023]
133
Courtney CM, Chatterjee A. Sequence-Specific Peptide Nucleic Acid-Based Antisense Inhibitors of TEM-1 β-Lactamase and Mechanism of Adaptive Resistance. ACS Infect Dis 2015;1:253-63. [PMID: 27622741 DOI: 10.1021/acsinfecdis.5b00042] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
134
Culyba MJ, Mo CY, Kohli RM. Targets for Combating the Evolution of Acquired Antibiotic Resistance. Biochemistry 2015;54:3573-82. [PMID: 26016604 PMCID: PMC4471857 DOI: 10.1021/acs.biochem.5b00109] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
135
Ram Y, Hadany L. Stress-induced mutagenesis and complex adaptation. Proc Biol Sci 2015;281:rspb.2014.1025. [PMID: 25143032 DOI: 10.1098/rspb.2014.1025] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
136
Gibson JL, Lombardo MJ, Aponyi I, Vera Cruz D, Ray MP, Rosenberg SM. Atypical Role for PhoU in Mutagenic Break Repair under Stress in Escherichia coli. PLoS One 2015;10:e0123315. [PMID: 25961709 PMCID: PMC4427277 DOI: 10.1371/journal.pone.0123315] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2015] [Accepted: 02/17/2015] [Indexed: 01/02/2023]  Open
137
Gallagher RR, Patel JR, Interiano AL, Rovner AJ, Isaacs FJ. Multilayered genetic safeguards limit growth of microorganisms to defined environments. Nucleic Acids Res 2015;43:1945-54. [PMID: 25567985 PMCID: PMC4330353 DOI: 10.1093/nar/gku1378] [Citation(s) in RCA: 87] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2014] [Revised: 12/20/2014] [Accepted: 12/20/2014] [Indexed: 12/29/2022]  Open
138
Staphylococcus aureus adapts to oxidative stress by producing H2O2-resistant small-colony variants via the SOS response. Infect Immun 2015;83:1830-44. [PMID: 25690100 PMCID: PMC4399076 DOI: 10.1128/iai.03016-14] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2014] [Accepted: 02/10/2015] [Indexed: 12/30/2022]  Open
139
Vasilyev N, Serganov A. Structures of RNA complexes with the Escherichia coli RNA pyrophosphohydrolase RppH unveil the basis for specific 5'-end-dependent mRNA decay. J Biol Chem 2015;290:9487-99. [PMID: 25657011 DOI: 10.1074/jbc.m114.634824] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2014] [Indexed: 12/20/2022]  Open
140
Lamm E. The genome as a developmental organ. J Physiol 2015;592:2283-93. [PMID: 24882813 DOI: 10.1113/jphysiol.2014.271734] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
141
Saxer G, Krepps MD, Merkley ED, Ansong C, Deatherage Kaiser BL, Valovska MT, Ristic N, Yeh PT, Prakash VP, Leiser OP, Nakhleh L, Gibbons HS, Kreuzer HW, Shamoo Y. Mutations in global regulators lead to metabolic selection during adaptation to complex environments. PLoS Genet 2014;10:e1004872. [PMID: 25501822 PMCID: PMC4263409 DOI: 10.1371/journal.pgen.1004872] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Accepted: 11/04/2014] [Indexed: 01/12/2023]  Open
142
Emergence of antibiotic resistance from multinucleated bacterial filaments. Proc Natl Acad Sci U S A 2014;112:178-83. [PMID: 25492931 DOI: 10.1073/pnas.1420702111] [Citation(s) in RCA: 143] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
143
Maharjan R, Ferenci T. Mutational signatures indicative of environmental stress in bacteria. Mol Biol Evol 2014;32:380-91. [PMID: 25389207 DOI: 10.1093/molbev/msu306] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
144
Ferenci T, Maharjan R. Mutational heterogeneity: A key ingredient of bet-hedging and evolutionary divergence? Bioessays 2014;37:123-30. [DOI: 10.1002/bies.201400153] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
145
Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations. Genome Res 2014;24:1821-9. [PMID: 25314969 PMCID: PMC4216923 DOI: 10.1101/gr.177659.114] [Citation(s) in RCA: 161] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
146
Rodríguez-Rojas A, Makarova O, Rolff J. Antimicrobials, stress and mutagenesis. PLoS Pathog 2014;10:e1004445. [PMID: 25299705 PMCID: PMC4192597 DOI: 10.1371/journal.ppat.1004445] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Accepted: 09/03/2014] [Indexed: 12/05/2022]  Open
147
Stress-induced mutation rates show a sigmoidal and saturable increase due to the RpoS sigma factor in Escherichia coli. Genetics 2014;198:1231-5. [PMID: 25213168 DOI: 10.1534/genetics.114.170258] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
148
Different tradeoffs result from alternate genetic adaptations to a common environment. Proc Natl Acad Sci U S A 2014;111:12121-6. [PMID: 25092325 DOI: 10.1073/pnas.1406886111] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
149
Gundlach J, Winter J. Evolution of Escherichia coli for maximum HOCl resistance through constitutive expression of the OxyR regulon. Microbiology (Reading) 2014;160:1690-1704. [DOI: 10.1099/mic.0.074815-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
150
Moreau PL. Protective role of the RpoE (σE) and Cpx envelope stress responses against gentamicin killing of nongrowing Escherichia coli incubated under aerobic, phosphate starvation conditions. FEMS Microbiol Lett 2014;357:151-6. [PMID: 25039943 DOI: 10.1111/1574-6968.12534] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Revised: 06/28/2014] [Accepted: 07/04/2014] [Indexed: 11/29/2022]  Open
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