101
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Kim J, Park J, Lee T, Lim M. Dynamics of Geminate Rebinding of NO with Cytochrome c in Aqueous Solution Using Femtosecond Vibrational Spectroscopy. J Phys Chem B 2012; 116:13663-71. [PMID: 23113639 DOI: 10.1021/jp308468j] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Jooyoung Kim
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 609-735,
Korea
| | - Jaeheung Park
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 609-735,
Korea
| | - Taegon Lee
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 609-735,
Korea
| | - Manho Lim
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 609-735,
Korea
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102
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Messmer AT, Lippert KM, Steinwand S, Lerch EBW, Hof K, Ley D, Gerbig D, Hausmann H, Schreiner PR, Bredenbeck J. Two-Dimensional Infrared Spectroscopy Reveals the Structure of an Evans Auxiliary Derivative and Its SnCl4Lewis Acid Complex. Chemistry 2012; 18:14989-95. [DOI: 10.1002/chem.201201583] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2012] [Indexed: 11/12/2022]
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103
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Kohl-Landgraf J, Braun M, Özçoban C, Gonçalves DPN, Heckel A, Wachtveitl J. Ultrafast Dynamics of a Spiropyran in Water. J Am Chem Soc 2012; 134:14070-7. [DOI: 10.1021/ja304395k] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Jörg Kohl-Landgraf
- Institute for Physical und Theoretical
Chemistry, Goethe University Frankfurt,
Max-von-Laue-Straße 7, Frankfurt/Main, Germany
| | - Markus Braun
- Institute for Physical und Theoretical
Chemistry, Goethe University Frankfurt,
Max-von-Laue-Straße 7, Frankfurt/Main, Germany
| | - Cem Özçoban
- Institute for Organic Chemistry
and Chemical Biology, Buchmann Institute for Molecular Life Sciences,
Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Straße 9, Frankfurt/Main,
Germany
| | - Diana P. N. Gonçalves
- Institute for Organic Chemistry
and Chemical Biology, Buchmann Institute for Molecular Life Sciences,
Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Straße 9, Frankfurt/Main,
Germany
| | - Alexander Heckel
- Institute for Organic Chemistry
and Chemical Biology, Buchmann Institute for Molecular Life Sciences,
Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Straße 9, Frankfurt/Main,
Germany
| | - Josef Wachtveitl
- Institute for Physical und Theoretical
Chemistry, Goethe University Frankfurt,
Max-von-Laue-Straße 7, Frankfurt/Main, Germany
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104
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Borek J, Perakis F, Kläsi F, Garrett-Roe S, Hamm P. Azide–water intermolecular coupling measured by two-color two-dimensional infrared spectroscopy. J Chem Phys 2012; 136:224503. [DOI: 10.1063/1.4726407] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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105
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Donaldson PM, Strzalka H, Hamm P. High sensitivity transient infrared spectroscopy: a UV/Visible transient grating spectrometer with a heterodyne detected infrared probe. OPTICS EXPRESS 2012; 20:12761-12770. [PMID: 22714305 DOI: 10.1364/oe.20.012761] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We describe here a high sensitivity means of performing time resolved UV/Visible pump, infrared probe spectroscopy using optically Heterodyne Detected UV-IR Transient Gratings. The experiment design employed is simple, robust and includes a novel means of generating phase locked pulse pairs that relies on only mirrors and a beamsplitter. A signal to noise ratio increase of 24 compared with a conventional pump-probe arrangement is demonstrated.
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Affiliation(s)
- Paul M Donaldson
- Institute of Physical Chemistry, University of Zürich, Winterthurerstrasse 190, Zürich CH-8057, Switzerland
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106
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Nguyen SC, Lomont JP, Zoerb MC, Hill AD, Schlegel JP, Harris CB. Chemistry of the Triplet 14-Electron Complex Fe(CO)3 in Solution Studied by Ultrafast Time-Resolved IR Spectroscopy. Organometallics 2012. [DOI: 10.1021/om3002075] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Son C. Nguyen
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United
States
| | - Justin P. Lomont
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United
States
| | - Matthew C. Zoerb
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
| | - Adam D. Hill
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United
States
| | - Jacob P. Schlegel
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United
States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United
States
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107
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Lomont JP, Nguyen SC, Harris CB. Ultrafast TRIR and DFT Studies of the Photochemical Dynamics of Co4(CO)12 in Solution. Organometallics 2012. [DOI: 10.1021/om300262s] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin P. Lomont
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Son C. Nguyen
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley, California, 94720,
United States
- Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
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108
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Kim S, Lim M. Protein Conformation-Controlled Rebinding Barrier of NO and Its Binding Trajectories in Myoglobin and Hemoglobin at Room Temperature. J Phys Chem B 2012; 116:5819-30. [DOI: 10.1021/jp300176q] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Seongheun Kim
- Department of Chemistry and Chemistry Institute for
Functional Materials, Pusan National University, Busan 609-735, Korea
| | - Manho Lim
- Department of Chemistry and Chemistry Institute for
Functional Materials, Pusan National University, Busan 609-735, Korea
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109
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Lomont JP, Nguyen SC, Harris CB. Ultrafast Studies of Stannane Activation by Triplet Organometallic Photoproducts. Organometallics 2012. [DOI: 10.1021/om300175e] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin P. Lomont
- Department of Chemistry, University of California, Berkeley,
California, 94720, United States, and Chemical Science Division, Lawrence
Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Son C. Nguyen
- Department of Chemistry, University of California, Berkeley,
California, 94720, United States, and Chemical Science Division, Lawrence
Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley,
California, 94720, United States, and Chemical Science Division, Lawrence
Berkeley National Laboratory, Berkeley, California 94720, United States
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110
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Lomont JP, Nguyen SC, Zoerb MC, Hill AD, Schlegel JP, Harris CB. Observation of a Short-Lived Triplet Precursor in CpCo(CO)-Catalyzed Alkyne Cyclotrimerization. Organometallics 2012. [DOI: 10.1021/om300058y] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin P. Lomont
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
| | - Son C. Nguyen
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
| | - Matthew C. Zoerb
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
| | - Adam D. Hill
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
| | - Jacob P. Schlegel
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley, California 94720, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley California 94720, United States
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111
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Lomont JP, Nguyen SC, Schlegel JP, Zoerb MC, Hill AD, Harris CB. Ultrafast Observation of a Solvent Dependent Spin State Equilibrium in CpCo(CO). J Am Chem Soc 2012; 134:3120-6. [DOI: 10.1021/ja2098468] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin P. Lomont
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Son C. Nguyen
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jacob P. Schlegel
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Matthew C. Zoerb
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Adam D. Hill
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley, California 94720, United States
and Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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112
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Abstract
The OH stretch line shape of ice Ih exhibits distinct peaks, the assignment of which remains controversial. We address this longstanding question using two dimensional infrared (2D IR) spectroscopy of the OH stretch of H(2)O and the OD stretch of D(2)O of ice Ih at T = 80 K. The isotropic response is dominated by a 2D line shape component which does not depend on the pump pulse frequency. The decay time of the component that does depend on the pump frequency is calculated using singular value decomposition (bi-exponential decay H(2)O: 30 fs, 490 fs; D(2)O: 40 fs, 690 fs). The anisotropic contribution exhibits on-diagonal peaks, which decay on a very fast timescale (H(2)O: 85 fs; D(2)O: 65 fs), with no corresponding anisotropic cross-peaks. Both isotropic and anisotropic results indicate that randomization of excited dipoles occurs with a very rapid rate, just like in neat liquid water. We conclude that the underlying mechanism relates to the complex interplay between exciton migration and exciton-phonon coupling.
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Affiliation(s)
- Fivos Perakis
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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113
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Guttentag M, Rodenberg A, Kopelent R, Probst B, Buchwalder C, Brandstätter M, Hamm P, Alberto R. Photocatalytic H2 Production with a Rhenium/Cobalt System in Water under Acidic Conditions. Eur J Inorg Chem 2011. [DOI: 10.1002/ejic.201100883] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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114
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Helbing J, Devereux M, Nienhaus K, Nienhaus GU, Hamm P, Meuwly M. Temperature dependence of the heat diffusivity of proteins. J Phys Chem A 2011; 116:2620-8. [PMID: 22047554 DOI: 10.1021/jp2061877] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
In a combined experimental-theoretical study, we investigated the transport of vibrational energy from the surrounding solvent into the interior of a heme protein, the sperm whale myoglobin double mutant L29W-S108L, and its dependence on temperature from 20 to 70 K. The hindered libration of a CO molecule that is not covalently bound to any part of the protein but is trapped in one of its binding pockets (the Xe4 pocket) was used as the local thermometer. Energy was deposited into the solvent by IR excitation. Experimentally, the energy transfer rate increased from (30 ps)(-1) at 20 K to (8 ps)(-1) at 70 K. This temperature trend is opposite to what is expected, assuming that the mechanism of heat transport is similar to that in glasses. In order to elucidate the mechanism and its temperature dependence, nonequilibrium molecular dynamics (MD) simulations were performed, which, however, predicted an essentially temperature-independent rate of vibrational energy flow. We tentatively conclude that the MD potentials overestimate the coupling between the protein and the CO molecule, which appears to be the rate-limiting step in the real system at low temperatures. Assuming that this coupling is anharmonic in nature, the observed temperature trend can readily be explained.
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Affiliation(s)
- Jan Helbing
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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115
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Perakis F, Widmer S, Hamm P. Two-dimensional infrared spectroscopy of isotope-diluted ice Ih. J Chem Phys 2011; 134:204505. [PMID: 21639454 DOI: 10.1063/1.3592561] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
We present experimental 2D IR spectra of isotope diluted ice Ih (i.e., the OH stretch mode of HOD in D(2)O and the OD stretch mode of HOD in H(2)O) at T = 80 K. The main spectral features are the extremely broad 1-2 excited state transition, much broader than the corresponding 0-1 groundstate transition, as well as the presence of quantum beats. We do not observe any inhomogeneous broadening that might be expected due to proton disorder in ice Ih. Complementary, we perform simulations in the framework of the Lippincott-Schroeder model, which qualitatively reproduce the experimental observations. We conclude that the origin of the observed line shape features is the coupling of the OH-vibrational coordinate with crystal phonons and explain the beatings as a coherent oscillation of the O···O hydrogen bond degree of freedom.
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Affiliation(s)
- Fivos Perakis
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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116
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Réhault J, Zanirato V, Olivucci M, Helbing J. Linear dichroism amplification: adapting a long-known technique for ultrasensitive femtosecond IR spectroscopy. J Chem Phys 2011; 134:124516. [PMID: 21456685 DOI: 10.1063/1.3572334] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We demonstrate strong amplification of polarization-sensitive transient IR signals using a pseudo-null crossed polarizer technique first proposed by Keston and Lospalluto [Fed. Proc. 10, 207 (1951)] and applied for nanosecond flash photolysis in the visible by Che et al. [Chem. Phys. Lett. 224, 145 (1994)]. We adapted the technique to ultrafast pulsed laser spectroscopy in the infrared using photoelastic modulators, which allow us to measure amplified linear dichroism at kilohertz repetition rates. The method was applied to a photoswitch of the N-alkylated Schiff base family in order to demonstrate its potential of strongly enhancing sensitivity and signal to noise in ultrafast transient IR experiments, to simplify spectra and to determine intramolecular transition dipole orientations.
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Affiliation(s)
- Julien Réhault
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
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117
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Haiser K, Koller FO, Huber M, Regner N, Schrader TE, Schreier WJ, Zinth W. Nitro-Phenylalanine: A Novel Sensor for Heat Transfer in Peptides. J Phys Chem A 2011; 115:2169-75. [DOI: 10.1021/jp110597a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Karin Haiser
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Florian O. Koller
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Markus Huber
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Nadja Regner
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Tobias E. Schrader
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Wolfgang J. Schreier
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Wolfgang Zinth
- BioMolekulare Optik and Center for Integrated Protein Science (Munich), Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
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118
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Probst B, Guttentag M, Rodenberg A, Hamm P, Alberto R. Photocatalytic H2 Production from Water with Rhenium and Cobalt Complexes. Inorg Chem 2011; 50:3404-12. [DOI: 10.1021/ic102317u] [Citation(s) in RCA: 143] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Benjamin Probst
- Institutes of Inorganic and ‡Physical Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Miguel Guttentag
- Institutes of Inorganic and ‡Physical Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Alexander Rodenberg
- Institutes of Inorganic and ‡Physical Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Peter Hamm
- Institutes of Inorganic and ‡Physical Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Roger Alberto
- Institutes of Inorganic and ‡Physical Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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119
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Donten ML, Hamm P, VandeVondele J. A Consistent Picture of the Proton Release Mechanism of oNBA in Water by Ultrafast Spectroscopy and Ab Initio Molecular Dynamics. J Phys Chem B 2011; 115:1075-83. [DOI: 10.1021/jp109053r] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mateusz L. Donten
- University of Zurich, Institute of Physical Chemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Peter Hamm
- University of Zurich, Institute of Physical Chemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Joost VandeVondele
- University of Zurich, Institute of Physical Chemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland
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120
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Kim JY, Park JH, Chowdhury SA, Lim MH. Picosecond Dynamics of CN--Ligated Ferric Cytochrome c after Photoexcitation Using Time-resolved Vibrational Spectroscopy. B KOREAN CHEM SOC 2010. [DOI: 10.5012/bkcs.2010.31.12.3771] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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121
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Perakis F, Hamm P. Two-Dimensional Infrared Spectroscopy of Supercooled Water. J Phys Chem B 2010; 115:5289-93. [DOI: 10.1021/jp1092288] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Fivos Perakis
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Peter Hamm
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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122
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Buback J, Kullmann M, Langhojer F, Nuernberger P, Schmidt R, Würthner F, Brixner T. Ultrafast Bidirectional Photoswitching of a Spiropyran. J Am Chem Soc 2010; 132:16510-9. [DOI: 10.1021/ja1062746] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Johannes Buback
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Martin Kullmann
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Florian Langhojer
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Patrick Nuernberger
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Ralf Schmidt
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Frank Würthner
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie and Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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123
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Rudolf P, Buback J, Aulbach J, Nuernberger P, Brixner T. Ultrafast Multisequential Photochemistry of 5-Diazo Meldrum’s Acid. J Am Chem Soc 2010; 132:15213-22. [DOI: 10.1021/ja1025529] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Philipp Rudolf
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Johannes Buback
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Jochen Aulbach
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Patrick Nuernberger
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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124
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Park J, Lee T, Lim M. Viscosity-Dependent Dynamics of CO Rebinding to Microperoxidase-8 in Glycerol/Water Solution. J Phys Chem B 2010; 114:10897-904. [DOI: 10.1021/jp1050436] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Jaeheung Park
- Department of Chemistry and Chemistry Institute of Functional Materials, Pusan National University, Busan, 609-735 Korea
| | - Taegon Lee
- Department of Chemistry and Chemistry Institute of Functional Materials, Pusan National University, Busan, 609-735 Korea
| | - Manho Lim
- Department of Chemistry and Chemistry Institute of Functional Materials, Pusan National University, Busan, 609-735 Korea
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125
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Matylitsky VV, Dworak L, Wachtveitl J. Donor/Acceptor adsorbates on the surface of metal oxide nanoporous films: a spectroscopic probe for different electron transfer pathways. Chemphyschem 2010; 11:2027-35. [PMID: 20486146 DOI: 10.1002/cphc.200900991] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
A composite model system which consists of a molecular donor/acceptor pair coupled to the surface of metal oxide nanoporous films is proposed to study the contribution of the surface trap states and their influence on the interfacial ET as well as charge trapping and spatial diffusion processes in films. The photophysics of this donor/acceptor system is investigated by time-resolved transient absorbance spectroscopy in the UV/Vis (347-675 nm) spectral region. Variation of the band gap allows one to disentangle the ET pathways. Adsorption of the donor/acceptor pair on the nonreactive Al(2)O(3) surface shows that coupling to the surface assists electron transfer between adsorbed donor and acceptor molecules, resulting in ultrafast intermolecular electron transfer of approximately 100 fs. On the other hand, a competition between interfacial and intermolecular electron transfer is observed for the donor/acceptor pair coupled to a reactive TiO(2) surface. The subsequent transfer of the conduction band electron to the electron acceptor is examined by monitoring the free charge carrier absorption in the mid-IR (approximately 5 microm) spectral region.
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Affiliation(s)
- Victor V Matylitsky
- Institute of Physical and Theoretical Chemistry, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, D-60438 Frankfurt am Main, Germany.
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126
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Denschlag R, Schreier WJ, Rieff B, Schrader TE, Koller FO, Moroder L, Zinth W, Tavan P. Relaxation time prediction for a light switchable peptide by molecular dynamics. Phys Chem Chem Phys 2010; 12:6204-18. [DOI: 10.1039/b921803c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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127
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Andresen ER, Gremaud R, Borgschulte A, Ramirez-Cuesta AJ, Züttel A, Hamm P. Vibrational Dynamics of LiBH4 by Infrared Pump−Probe and 2D Spectroscopy. J Phys Chem A 2009; 113:12838-46. [DOI: 10.1021/jp907746z] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Esben Ravn Andresen
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
| | - Robin Gremaud
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
| | - Andreas Borgschulte
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
| | - Anibal Javier Ramirez-Cuesta
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
| | - Andreas Züttel
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
| | - Peter Hamm
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Empa, Swiss Federal Laboratories for Materials Testing and Research, Hydrogen & Energy, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland, and ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, U.K
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128
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Schade M, Moretto A, Crisma M, Toniolo C, Hamm P. Vibrational Energy Transport in Peptide Helices after Excitation of C−D Modes in Leu-d10. J Phys Chem B 2009; 113:13393-7. [DOI: 10.1021/jp906363a] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marco Schade
- Physikalisch-Chemisches Institut, Universität Zürich, CH-8057 Zürich, Switzerland, and Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, I-35131 Padova, Italy
| | - Alessandro Moretto
- Physikalisch-Chemisches Institut, Universität Zürich, CH-8057 Zürich, Switzerland, and Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, I-35131 Padova, Italy
| | - Marco Crisma
- Physikalisch-Chemisches Institut, Universität Zürich, CH-8057 Zürich, Switzerland, and Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, I-35131 Padova, Italy
| | - Claudio Toniolo
- Physikalisch-Chemisches Institut, Universität Zürich, CH-8057 Zürich, Switzerland, and Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, I-35131 Padova, Italy
| | - Peter Hamm
- Physikalisch-Chemisches Institut, Universität Zürich, CH-8057 Zürich, Switzerland, and Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, I-35131 Padova, Italy
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129
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Pang Y, Prantil MA, Van Tassle AJ, Jones GA, Fleming GR. Excited-State Dynamics of 8′-Apo-β-caroten-8′-al and 7′,7′-Dicyano-7′-apo-β-carotene Studied by Femtosecond Time-Resolved Infrared Spectroscopy. J Phys Chem B 2009; 113:13086-95. [DOI: 10.1021/jp905758e] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yoonsoo Pang
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460
| | - Matthew A. Prantil
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460
| | - Aaron J. Van Tassle
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460
| | - Garth A. Jones
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460
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130
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Garrett-Roe S, Hamm P. Purely absorptive three-dimensional infrared spectroscopy. J Chem Phys 2009; 130:164510. [PMID: 19405597 DOI: 10.1063/1.3122982] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
We demonstrate a method to collect purely absorptive three-dimensional (3D) fifth-order vibrational spectra on the model system CO(2) in H(2)O. The six beam interferometer is described, as well as a method to experimentally determine the phase of the 3D spectrum. The measured spectra agree very well with simulations of the data based on the cumulant expansion. There are five peaks corresponding to different paths up and down the vibrational ladder. The positions, signs, and amplitudes of the peaks agree with theoretical predictions, and the intensities of the peaks scale linearly with concentration. Based on the concentration dependence and agreement between the simulations and measurements, we conclude that cascaded lower order signals contribute negligibly to the observed signal.
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Affiliation(s)
- Sean Garrett-Roe
- Physikalish-Chemisches Institut, Universität Zürich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland
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131
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Andresen ER, Hamm P. Site-specific difference 2D-IR spectroscopy of bacteriorhodopsin. J Phys Chem B 2009; 113:6520-7. [PMID: 19358550 DOI: 10.1021/jp810397u] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
We demonstrate the extension of the principle of difference Fourier transform infrared (FTIR) spectroscopy to difference 2D-IR spectroscopy. To this end, we measure difference 2D-IR spectra of the protein bacteriorhodopsin in its early J- and K-intermediates. By comparing with the static 2D-IR spectrum of the protonated Schiff base of all-trans retinal, we demonstrate that the 2D-IR spectrum of the all-trans retinal chromophore in bacteriorhodopsin can be measured with the background from the remainder of the protein completely suppressed. We discuss several models to interpret the detailed line shape of the difference 2D-IR spectrum.
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Affiliation(s)
- Esben Ravn Andresen
- Physikalisch-Chemisches Institut, Universitat Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
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132
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Schäfer T, Lindner J, Vöhringer P, Schwarzer D. OD stretch vibrational relaxation of HOD in liquid to supercritical H2O. J Chem Phys 2009; 130:224502. [DOI: 10.1063/1.3151673] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
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133
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Hoijemberg PA, Zerbs J, Reichardt C, Schwarzer D, Chesta CA, Schroeder J, Aramendía PF. Photophysics and photochemistry of an asymmetrically substituted diazene: a suitable cage effect probe. J Phys Chem A 2009; 113:5531-9. [PMID: 19378934 DOI: 10.1021/jp809315u] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The photophysics and photochemistry of (1-biphenyl-4-yl-1-methyl-ethyl)-tert-butyl diazene were thoroughly studied by laser flash photolysis from the picosecond to the microsecond time domain. The compound has favorable features as a radical photoinitiator and as a probe for cage effect studies in liquids, supercritical fluids, and compressed gases. The biphenyl moiety acts as an antenna efficiently transferring electronic energy to the dissociative (1)n,pi* state centered on the azo moiety. By picosecond experiments irradiating at the biphenyl- and at the azo-centered transitions, we were able to demonstrate this fact as well as determine a lifetime of 0.7 ps for the buildup of 1-biphenyl-4-yl-1-methyl-ethyl radicals (BME*). The sum of in-cage reaction rate constants of BME* radicals by combination and disproportionation is 5 x 10(10) s(-1). The free radical quantum yield in solution is 0.21 (phi(BME*)) in n-hexane at room temperature, whereas the dissociation quantum yield approaches 50%. The symmetric ketone, 2,4-bis-biphenyl-4-yl-2,4-dimethyl-pentan-2-one, was used as a reference compound for the production and reaction of BME* radicals. Transient IR measurements show CO stretching bands of the excited (3)pi,pi* and (1)n,pi* states but no dissociation up to 0.5 ns. A fluorescence lifetime of 1 ns for this ketone is consistent with this observation. By transient actinometry and kinetic decays in the microsecond time range, we measured epsilon(BME*) = (2.3 +/- 0.2) x 10(4) M(-1) cm(-1) at 325 nm and a second-order rate constant of 5.8 x 10(9) M(-1) s(-1) for the consumption of BME* radicals.
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Affiliation(s)
- Pablo A Hoijemberg
- INQUIMAE and Departamento de Química Inorgánica, Analitica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, 1428 Buenos Aires, Argentina
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134
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Rebinding Dynamics of CO Following Photodissociation of 4.0 M Guanidine HCl-Denatured Carbonmonoxyhemoglobin. B KOREAN CHEM SOC 2009. [DOI: 10.5012/bkcs.2009.30.4.913] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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135
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Maçôas EMS, Myllyperkiö P, Kunttu H, Pettersson M. Vibrational Relaxation of Matrix-Isolated Carboxylic Acid Dimers and Monomers. J Phys Chem A 2009; 113:7227-34. [DOI: 10.1021/jp8099384] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Ermelinda M. S. Maçôas
- Nanoscience Center, Department of Chemistry, P.O. Box 35, University of Jyväskylä, FI-40014 Finland
| | - Pasi Myllyperkiö
- Nanoscience Center, Department of Chemistry, P.O. Box 35, University of Jyväskylä, FI-40014 Finland
| | - Henrik Kunttu
- Nanoscience Center, Department of Chemistry, P.O. Box 35, University of Jyväskylä, FI-40014 Finland
| | - Mika Pettersson
- Nanoscience Center, Department of Chemistry, P.O. Box 35, University of Jyväskylä, FI-40014 Finland
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136
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Dworak L, Matylitsky VV, Wachtveitl J. Ultrafast Photoinduced Processes in Alizarin-Sensitized Metal Oxide Mesoporous Films. Chemphyschem 2009; 10:384-91. [DOI: 10.1002/cphc.200800533] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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137
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138
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139
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Wolpert D, Schade M, Brixner T. Femtosecond midinfrared study of the photoinduced Wolff rearrangement of diazonaphthoquinone. J Chem Phys 2009; 129:094504. [PMID: 19044874 DOI: 10.1063/1.2971037] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Time-resolved vibrational femtosecond spectroscopy is employed to investigate the photoinduced Wolff rearrangement reaction of diazonaphthoquinone (DNQ) dissolved in different solvents (methanol and water). DNQ is an important compound in commercial Novolak photoresists. Upon photoexcitation the ketene intermediate appears within 300 fs, indicating that the ketene is formed in a very fast concerted process involving N(2) loss and rearrangement. The strong shift of the vibrational band, assigned to the ketene by density functional theory calculations and experimental infrared spectra, toward higher wavenumbers is attributed to vibrational cooling. The relaxation time depends on the solvent (10 ps in methanol and 3 ps in water). However, the spectroscopic data show that the indirect ketene formation via a carbene intermediate might also be involved in the reaction process contributing to the ketene formation on the 10 ps time scale.
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Affiliation(s)
- Daniel Wolpert
- Physikalisches Institut, Universitat Wurzburg, Am Hubland, 97074 Wurzburg, Germany
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140
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Bregy H, Heimgartner H, Helbing J. A Time-resolved Spectroscopic Comparison of the Photoisomerization of Small β-Turn-forming Thioxopeptides. J Phys Chem B 2009; 113:1756-62. [DOI: 10.1021/jp8089402] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- H. Bregy
- Physikalisch-Chemisches Institut and Organisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - H. Heimgartner
- Physikalisch-Chemisches Institut and Organisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - J. Helbing
- Physikalisch-Chemisches Institut and Organisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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141
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Bonmarin M, Helbing J. Polarization control of ultrashort mid-IR laser pulses for transient vibrational circular dichroism measurements. Chirality 2009; 21 Suppl 1:E298-306. [DOI: 10.1002/chir.20819] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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142
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Botan V, Hamm P. Intramolecular vibrational energy relaxation in nitrous acid (HONO). J Chem Phys 2008; 129:164506. [DOI: 10.1063/1.2996355] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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143
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Botan V, Hamm P. Temperature dependence of the IR drivencis-transisomerization of nitrous acid (HONO). J Chem Phys 2008; 129:114510. [DOI: 10.1063/1.2978386] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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144
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Bonmarin M, Helbing J. A picosecond time-resolved vibrational circular dichroism spectrometer. OPTICS LETTERS 2008; 33:2086-2088. [PMID: 18794939 DOI: 10.1364/ol.33.002086] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We present an experimental setup to detect transient vibrational circular dichroism signals. A femtosecond laser system is synchronized to a photoelastic modulator to produce alternating left- and right-handed circularly polarized mid-IR pulses at 1 kHz repetition rate. Transient changes in the circular dichroism of the CH-stretch vibrations of a cobalt-sparteine complex were probed in a proof-of-principle experiment and are clearly distinct from conventional transient absorption changes.
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Affiliation(s)
- Mathias Bonmarin
- Physikalisch-Chemisches Institut, Universität Zurich, Winterthurerstrasse 190, Zürich, Switzerland
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145
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Botan V, Hamm P. Rotational dynamics of nitrous acid (HONO) in Kr matrix. J Chem Phys 2008; 129:044507. [DOI: 10.1063/1.2956503] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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146
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Backus EHG, Nguyen PH, Botan V, Pfister R, Moretto A, Crisma M, Toniolo C, Stock G, Hamm P. Energy Transport in Peptide Helices: A Comparison between High- and Low-Energy Excitations. J Phys Chem B 2008; 112:9091-9. [DOI: 10.1021/jp711046e] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ellen H. G. Backus
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Phuong H. Nguyen
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Virgiliu Botan
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Rolf Pfister
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Alessandro Moretto
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Marco Crisma
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Claudio Toniolo
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Gerhard Stock
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
| | - Peter Hamm
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland, Institute of Biomolecular Chemistry, Padova Unit, CNR, Department of Chemistry, University of Padova, via Marzolo 1, I-35131 Padova, Italy, and Institut für Physikalische and Theoretische Chemie, J. W. Goethe Unversität, Max-von-Laue-Strasse 7, D-60438 Frankfurt, Germany
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147
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Koziński M, Garrett-Roe S, Hamm P. 2D-IR Spectroscopy of the Sulfhydryl Band of Cysteines in the Hydrophobic Core of Proteins. J Phys Chem B 2008; 112:7645-50. [DOI: 10.1021/jp8005734] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- M. Koziński
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland
| | - S. Garrett-Roe
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland
| | - P. Hamm
- Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland
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148
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Staudt H, Köhler T, Lorenz L, Neumann K, Verhoefen MK, Wachtveitl J. Time resolved spectroscopy on Pigment Yellow 101 in solid state. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.10.038] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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149
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Banno M, Ohta K, Tominaga K. Ultrafast Dynamics of the Carbonyl Stretching Vibration in Acetic Acid in Aqueous Solution Studied by Sub-Picosecond Infrared Spectroscopy. J Phys Chem A 2008; 112:4170-5. [DOI: 10.1021/jp076920m] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Motohiro Banno
- Molecular Photoscience Research Center, Kobe University, Graduate School of Science and Technology, Kobe University, and CREST/JST, Rokkodai-cho 1-1, Nada, Kobe 657-8501, Japan
| | - Kaoru Ohta
- Molecular Photoscience Research Center, Kobe University, Graduate School of Science and Technology, Kobe University, and CREST/JST, Rokkodai-cho 1-1, Nada, Kobe 657-8501, Japan
| | - Keisuke Tominaga
- Molecular Photoscience Research Center, Kobe University, Graduate School of Science and Technology, Kobe University, and CREST/JST, Rokkodai-cho 1-1, Nada, Kobe 657-8501, Japan
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150
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Initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy. Biophys J 2008; 94:4796-807. [PMID: 18326639 DOI: 10.1529/biophysj.107.125484] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We present a comparative study using femtosecond pump/probe spectroscopy in the visible and infrared of the early photodynamics of solubilized proteorhodopsin (green absorbing variant) in D(2)O with deprotonated (pD 9.2) and protonated (pD 6.4) primary proton acceptor Asp-97. The vis-pump/vis-probe experiments show a kinetic isotope effect that is more pronounced for alkaline conditions, thus decreasing the previously reported pH-dependence of the primary reaction of proteorhodopsin in H(2)O. This points to a pH dependent H-bonding network in the binding pocket of proteorhodopsin, that directly influences the primary photo-induced dynamics. The vis-pump/IR-probe experiments were carried out in two different spectral regions and allowed to monitor the retinal C=C (1500 cm(-1)-1580 cm(-1)) and C=N stretching vibration as well as the amide I mode of the protein (1590 cm(-1)-1680 cm(-1)). Like the FTIR spectra of the K intermediate (PR(K)-PR difference spectra) in this spectral range, the kinetic parameters and also the quantum efficiency of photo-intermediate formation are found to be virtually independent of the pD value.
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