151
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Qiu Z, Tu L, Huang L, Zhu T, Nock V, Yu E, Liu X, Wang W. An integrated platform enabling optogenetic illumination of Caenorhabditis elegans neurons and muscular force measurement in microstructured environments. BIOMICROFLUIDICS 2015; 9:014123. [PMID: 25759756 PMCID: PMC4336256 DOI: 10.1063/1.4908595] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2015] [Accepted: 02/06/2015] [Indexed: 06/01/2023]
Abstract
Optogenetics has been recently applied to manipulate the neural circuits of Caenorhabditis elegans (C. elegans) to investigate its mechanosensation and locomotive behavior, which is a fundamental topic in model biology. In most neuron-related research, free C. elegans moves on an open area such as agar surface. However, this simple environment is different from the soil, in which C. elegans naturally dwells. To bridge up the gap, this paper presents integration of optogenetic illumination of C. elegans neural circuits and muscular force measurement in a structured microfluidic chip mimicking the C. elegans soil habitat. The microfluidic chip is essentially a ∼1 × 1 cm(2) elastomeric polydimethylsiloxane micro-pillar array, configured in either form of lattice (LC) or honeycomb (HC) to mimic the environment in which the worm dwells. The integrated system has four key modules for illumination pattern generation, pattern projection, automatic tracking of the worm, and force measurement. Specifically, two optical pathways co-exist in an inverted microscope, including built-in bright-field illumination for worm tracking and pattern generation, and added-in optogenetic illumination for pattern projection onto the worm body segment. The behavior of a freely moving worm in the chip under optogenetic manipulation can be recorded for off-line force measurements. Using wild-type N2 C. elegans, we demonstrated optical illumination of C. elegans neurons by projecting light onto its head/tail segment at 14 Hz refresh frequency. We also measured the force and observed three representative locomotion patterns of forward movement, reversal, and omega turn for LC and HC configurations. Being capable of stimulating or inhibiting worm neurons and simultaneously measuring the thrust force, this enabling platform would offer new insights into the correlation between neurons and locomotive behaviors of the nematode under a complex environment.
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Affiliation(s)
- Zhichang Qiu
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instruments, Tsinghua University , Beijing, China
| | - Long Tu
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instruments, Tsinghua University , Beijing, China
| | - Liang Huang
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instruments, Tsinghua University , Beijing, China
| | - Taoyuanmin Zhu
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instruments, Tsinghua University , Beijing, China
| | - Volker Nock
- Department of Electrical and Computer Engineering, University of Canterbury , Christchurch, New Zealand
| | - Enchao Yu
- School of Life Sciences, Tsinghua University , Beijing, China
| | - Xiao Liu
- School of Life Sciences, Tsinghua University , Beijing, China
| | - Wenhui Wang
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instruments, Tsinghua University , Beijing, China
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152
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VAV-1 acts in a single interneuron to inhibit motor circuit activity in Caenorhabditis elegans. Nat Commun 2014; 5:5579. [PMID: 25412913 PMCID: PMC4241504 DOI: 10.1038/ncomms6579] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2014] [Accepted: 10/15/2014] [Indexed: 11/09/2022] Open
Abstract
The complex molecular and cellular mechanisms underlying neuronal control of animal movement are not well understood. Locomotion of Caenorhabditis elegans is mediated by a neuronal circuit that produces coordinated sinusoidal movement. Here we utilize this simple, yet elegant, behaviour to show that VAV-1, a conserved guanine nucleotide exchange factor for Rho-family GTPases, negatively regulates motor circuit activity and the rate of locomotion. While vav-1 is expressed in a small subset of neurons, we find that VAV-1 function is required in a single interneuron, ALA, to regulate motor neuron circuit activity. Furthermore, we show by genetic and optogenetic manipulation of ALA that VAV-1 is required for the excitation and activation of this neuron. We find that ALA signalling inhibits command interneuron activity by abrogating excitatory signalling in the command interneurons, which is responsible for promoting motor neuron circuit activity. Together, our data describe a novel neuromodulatory role for VAV-1-dependent signalling in the regulation of motor circuit activity and locomotion.
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153
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Szigeti B, Gleeson P, Vella M, Khayrulin S, Palyanov A, Hokanson J, Currie M, Cantarelli M, Idili G, Larson S. OpenWorm: an open-science approach to modeling Caenorhabditis elegans. Front Comput Neurosci 2014; 8:137. [PMID: 25404913 PMCID: PMC4217485 DOI: 10.3389/fncom.2014.00137] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2014] [Accepted: 10/11/2014] [Indexed: 01/27/2023] Open
Abstract
OpenWorm is an international collaboration with the aim of understanding how the behavior of Caenorhabditis elegans (C. elegans) emerges from its underlying physiological processes. The project has developed a modular simulation engine to create computational models of the worm. The modularity of the engine makes it possible to easily modify the model, incorporate new experimental data and test hypotheses. The modeling framework incorporates both biophysical neuronal simulations and a novel fluid-dynamics-based soft-tissue simulation for physical environment-body interactions. The project's open-science approach is aimed at overcoming the difficulties of integrative modeling within a traditional academic environment. In this article the rationale is presented for creating the OpenWorm collaboration, the tools and resources developed thus far are outlined and the unique challenges associated with the project are discussed.
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Affiliation(s)
- Balázs Szigeti
- Neuroinformatics Doctoral Training Centre, University of Edinburgh Edinburgh, UK ; OpenWorm Project San Diego, CA, USA
| | - Padraig Gleeson
- OpenWorm Project San Diego, CA, USA ; Department of Neuroscience, Physiology and Pharmacology, University College London London, UK
| | - Michael Vella
- OpenWorm Project San Diego, CA, USA ; Department of Physiology, Development and Neuroscience, University of Cambridge Cambridge, UK
| | - Sergey Khayrulin
- OpenWorm Project San Diego, CA, USA ; Laboratory of Complex Systems Simulation, A.P. Ershov Institute of Informatics Systems Novosibirsk, Russia
| | - Andrey Palyanov
- OpenWorm Project San Diego, CA, USA ; Laboratory of Complex Systems Simulation, A.P. Ershov Institute of Informatics Systems Novosibirsk, Russia
| | - Jim Hokanson
- OpenWorm Project San Diego, CA, USA ; Department of Biomedical Engineering, Duke University Durham, NC, USA
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154
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A conserved dopamine-cholecystokinin signaling pathway shapes context-dependent Caenorhabditis elegans behavior. PLoS Genet 2014; 10:e1004584. [PMID: 25167143 PMCID: PMC4148232 DOI: 10.1371/journal.pgen.1004584] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Accepted: 07/08/2014] [Indexed: 12/02/2022] Open
Abstract
An organism's ability to thrive in changing environmental conditions requires the capacity for making flexible behavioral responses. Here we show that, in the nematode Caenorhabditis elegans, foraging responses to changes in food availability require nlp-12, a homolog of the mammalian neuropeptide cholecystokinin (CCK). nlp-12 expression is limited to a single interneuron (DVA) that is postsynaptic to dopaminergic neurons involved in food-sensing, and presynaptic to locomotory control neurons. NLP-12 release from DVA is regulated through the D1-like dopamine receptor DOP-1, and both nlp-12 and dop-1 are required for normal local food searching responses. nlp-12/CCK overexpression recapitulates characteristics of local food searching, and DVA ablation or mutations disrupting muscle acetylcholine receptor function attenuate these effects. Conversely, nlp-12 deletion reverses behavioral and functional changes associated with genetically enhanced muscle acetylcholine receptor activity. Thus, our data suggest that dopamine-mediated sensory information about food availability shapes foraging in a context-dependent manner through peptide modulation of locomotory output. Animal behavior is profoundly affected by contextual information about the internal state of the organism as well as sensory information about the external environment. A class of signaling molecules known as neuropeptides have been implicated in driving transitions between behavioral states (e.g., from food seeking to satiety and back) but we have only a limited understanding of how neuropeptide signaling modulates neural circuit activity and elicits context-dependent behaviors. Here we identify a novel mechanism by which C. elegans modulate their behavior in response to sensory information about food. We show that dopaminergic regulation of NLP-12, a C. elegans homolog of the mammalian neuropeptide cholecystokinin (CCK), shapes behavioral transitions that are central to food searching. Given the conserved nature of these signaling pathways, our work raises the interesting possibility that dopamine modulation of CCK signaling represents a general mechanism by which nervous systems shape context-dependent behavioral changes.
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155
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Abstract
The ability of organisms to seamlessly ignore familiar, inconsequential stimuli improves their selective attention and response to salient features of the environment. Here, I propose that this fundamental but unexplained phenomenon substantially derives from the ability of any pattern of neural excitation to create an enhanced inhibitory (or "negative") image of itself through target-specific scaling of inhibitory inputs onto active excitatory neurons. Familiar stimuli encounter strong negative images and are therefore less likely to be transmitted to higher brain centers. Integrating historical and recent observations, the negative-image model described here provides a mechanistic framework for understanding habituation, which is connected to ideas on dynamic predictive coding. In addition, it suggests insights for understanding autism spectrum disorders.
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156
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Mechanosensory molecules and circuits in C. elegans. Pflugers Arch 2014; 467:39-48. [PMID: 25053538 PMCID: PMC4281349 DOI: 10.1007/s00424-014-1574-3] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Revised: 06/30/2014] [Accepted: 07/02/2014] [Indexed: 01/28/2023]
Abstract
Mechanosensory neurons, whose activity is controlled by mechanical force, underlie the senses of touch, hearing, and proprioception, yet despite their importance, the molecular basis of mechanotransduction is poorly understood. Genetic studies in Caenorhabditis elegans have provided a useful approach for identifying potential components of mechanotransduction complexes that might be conserved in more complex organisms. This review describes the mechanosensory systems of C. elegans, including the sensory neurons and circuitry involved in body touch, nose touch, and proprioception. In addition, the roles of genes encoding known and potential mechanosensory receptors, including members of the broadly conserved transient receptor potential (TRP) and degerin/epithelial Na+ channel (DEG/ENaC) channel families, are discussed.
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157
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Gjorgjieva J, Biron D, Haspel G. Neurobiology of Caenorhabditis elegans Locomotion: Where Do We Stand? Bioscience 2014; 64:476-486. [PMID: 26955070 PMCID: PMC4776678 DOI: 10.1093/biosci/biu058] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Animals use a nervous system for locomotion in some stage of their life cycle. The nematode Caenorhabditis elegans, a major animal model for almost all fields of experimental biology, has long been used for detailed studies of genetic and physiological locomotion mechanisms. Of its 959 somatic cells, 302 are neurons that are identifiable by lineage, location, morphology, and neurochemistry in every adult hermaphrodite. Of those, 75 motoneurons innervate body wall muscles that provide the thrust during locomotion. In this Overview, we concentrate on the generation of either forward- or backward-directed motion during crawling and swimming. We describe locomotion behavior, the parts constituting the locomotion system, and the relevant neuronal connectivity. Because it is not yet fully understood how these components combine to generate locomotion, we discuss competing hypotheses and models.
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Affiliation(s)
- Julijana Gjorgjieva
- Julijana Gjorgjieva is a postdoctoral research fellow at the Center for Brain Science of Harvard University, in Cambridge, Massachusetts. She uses theoretical and numerical tools to understand how developing neural circuits wire to perform a particular function, from the mammalian visual system to the motor system of small invertebrates. David Biron is a physicist at the University of Chicago, Illinois. He studies the sleep of the roundworm Caenorhabditis elegans and related problems in biological physics. Gal Haspel ( ) is a neuroethologist at the New Jersey Institute of Technology, in Newark. He studies the activity, connectivity and recovery from injury of the neuronal network that underlie locomotion in the nematode Caenorhabditis elegans
| | - David Biron
- Julijana Gjorgjieva is a postdoctoral research fellow at the Center for Brain Science of Harvard University, in Cambridge, Massachusetts. She uses theoretical and numerical tools to understand how developing neural circuits wire to perform a particular function, from the mammalian visual system to the motor system of small invertebrates. David Biron is a physicist at the University of Chicago, Illinois. He studies the sleep of the roundworm Caenorhabditis elegans and related problems in biological physics. Gal Haspel ( ) is a neuroethologist at the New Jersey Institute of Technology, in Newark. He studies the activity, connectivity and recovery from injury of the neuronal network that underlie locomotion in the nematode Caenorhabditis elegans
| | - Gal Haspel
- Julijana Gjorgjieva is a postdoctoral research fellow at the Center for Brain Science of Harvard University, in Cambridge, Massachusetts. She uses theoretical and numerical tools to understand how developing neural circuits wire to perform a particular function, from the mammalian visual system to the motor system of small invertebrates. David Biron is a physicist at the University of Chicago, Illinois. He studies the sleep of the roundworm Caenorhabditis elegans and related problems in biological physics. Gal Haspel ( ) is a neuroethologist at the New Jersey Institute of Technology, in Newark. He studies the activity, connectivity and recovery from injury of the neuronal network that underlie locomotion in the nematode Caenorhabditis elegans
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158
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Kunert J, Shlizerman E, Kutz JN. Low-dimensional functionality of complex network dynamics: neurosensory integration in the Caenorhabditis Elegans connectome. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:052805. [PMID: 25353842 DOI: 10.1103/physreve.89.052805] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2013] [Indexed: 06/04/2023]
Abstract
We develop a biophysical model of neurosensory integration in the model organism Caenorhabditis elegans. Building on experimental findings on the neuron conductances and their resolved connectome, we posit the first full dynamic model of the neural voltage excitations that allows for a characterization of network structures which link input stimuli to neural proxies of behavioral responses. Full connectome simulations of neural responses to prescribed inputs show that robust, low-dimensional bifurcation structures drive neural voltage activity modes. Comparison of these modes with experimental studies allows us to link these network structures to behavioral responses. Thus the underlying bifurcation structures discovered, i.e., induced Hopf bifurcations, are critical in explaining behavioral responses such as swimming and crawling.
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Affiliation(s)
- James Kunert
- Department of Physics, University of Washington, Seattle, Washington 98195, USA
| | - Eli Shlizerman
- Department of Applied Mathematics, University of Washington, Seattle, Washington 98195-2420, USA
| | - J Nathan Kutz
- Department of Applied Mathematics, University of Washington, Seattle, Washington 98195-2420, USA
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159
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Deng X, Xu JX. A 3D undulatory locomotion model inspired by C. elegans through DNN approach. Neurocomputing 2014. [DOI: 10.1016/j.neucom.2013.10.019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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160
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Kopito RB, Levine E. Durable spatiotemporal surveillance of Caenorhabditis elegans response to environmental cues. LAB ON A CHIP 2014; 14:764-770. [PMID: 24336777 DOI: 10.1039/c3lc51061a] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Animal response to changes in environmental cues is a complex dynamical process that occurs at diverse molecular and cellular levels. To gain a quantitative understanding of such processes, it is desirable to observe many individuals, subjected to repeatable and well defined environmental cues over long time periods. Here we present WormSpa, a microfluidic system where worms are individually confined in optimized chambers. We show that worms in WormSpa are neither stressed nor starved, and in particular exhibit pumping and egg-laying behaviors equivalent to those of freely behaving worms. We demonstrate the applicability of WormSpa for studying stress response and physiological processes. WormSpa is simple to make and easy to operate, and its design is modular, making it straightforward to incorporate available microfluidic technologies. We expect that WormSpa would open novel avenues of research, hitherto impossible or impractical.
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Affiliation(s)
- Ronen B Kopito
- Department of Physics and FAS Center for Systems Biology, Harvard University, 52 Oxford St, Cambridge, MA 02138, USA.
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161
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Mowrey WR, Bennett JR, Portman DS. Distributed effects of biological sex define sex-typical motor behavior in Caenorhabditis elegans. J Neurosci 2014; 34:1579-91. [PMID: 24478342 PMCID: PMC3905135 DOI: 10.1523/jneurosci.4352-13.2014] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2013] [Revised: 11/05/2013] [Accepted: 11/07/2013] [Indexed: 12/24/2022] Open
Abstract
Sex differences in shared behaviors (for example, locomotion and feeding) are a nearly universal feature of animal biology. Though these behaviors may share underlying neural programs, their kinematics can exhibit robust differences between males and females. The neural underpinnings of these differences are poorly understood because of the often-untested assumption that they are determined by sex-specific body morphology. Here, we address this issue in the nematode Caenorhabditis elegans, which features two sexes with distinct body morphologies but similar locomotor circuitry and body muscle. Quantitative behavioral analysis shows that C. elegans and related nematodes exhibit significant sex differences in the dynamics and geometry of locomotor body waves, such that the male is generally faster. Using a recently proposed model of locomotor wave propagation, we show that sex differences in both body mechanics and the intrinsic dynamics of the motor system can contribute to kinematic differences in distinct mechanical contexts. By genetically sex-reversing the properties of specific tissues and cells, however, we find that sex-specific locomotor frequency in C. elegans is determined primarily by the functional modification of shared sensory neurons. Further, we find that sexual modification of body wall muscle together with the nervous system is required to alter body wave speed. Thus, rather than relying on a single focus of modification, sex differences in motor dynamics require independent modifications to multiple tissue types. Our results suggest shared motor behaviors may be sex-specifically optimized though distributed modifications to several aspects of morphology and physiology.
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Affiliation(s)
| | | | - Douglas S. Portman
- Center for Neural Development and Disease
- Department of Biomedical Genetics, and
- Department of Biology, University of Rochester, School of Medicine and Dentistry, Rochester, New York 14642
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162
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Cohen N, Sanders T. Nematode locomotion: dissecting the neuronal-environmental loop. Curr Opin Neurobiol 2014; 25:99-106. [PMID: 24709607 DOI: 10.1016/j.conb.2013.12.003] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Revised: 11/01/2013] [Accepted: 12/05/2013] [Indexed: 10/25/2022]
Abstract
With a fully reconstructed and extensively characterized neural circuit, the nematode Caenorhabditis elegans is a promising model system for integrating our understanding of neuronal, circuit and whole-animal dynamics. Fundamental to addressing this challenge is the need to consider the tight neuronal-environmental coupling that allows the animal to survive and adapt to changing conditions. Locomotion behaviors are affected by environmental variables both at the biomechanical level and via adaptive sensory responses that drive and modulate premotor and motor circuits. Here we review significant advances in our understanding of proprioceptive control of locomotion, and more abstract models of spatial orientation and navigation. The growing evidence of the complexity of the underlying circuits suggests that the intuition gained is but the first step in elucidating the secrets of neural computation in this relatively simple system.
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Affiliation(s)
- Netta Cohen
- School of Computing, University of Leeds, Leeds LS2 9JT, United Kingdom.
| | - Tom Sanders
- School of Computing, University of Leeds, Leeds LS2 9JT, United Kingdom
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163
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Bakhtina NA, Korvink JG. Microfluidic laboratories for C. elegans enhance fundamental studies in biology. RSC Adv 2014. [DOI: 10.1039/c3ra43758b] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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164
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Romanova EV, Aerts JT, Croushore CA, Sweedler JV. Small-volume analysis of cell-cell signaling molecules in the brain. Neuropsychopharmacology 2014; 39:50-64. [PMID: 23748227 PMCID: PMC3857641 DOI: 10.1038/npp.2013.145] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 04/26/2013] [Accepted: 05/06/2013] [Indexed: 12/19/2022]
Abstract
Modern science is characterized by integration and synergy between research fields. Accordingly, as technological advances allow new and more ambitious quests in scientific inquiry, numerous analytical and engineering techniques have become useful tools in biological research. The focus of this review is on cutting edge technologies that aid direct measurement of bioactive compounds in the nervous system to facilitate fundamental research, diagnostics, and drug discovery. We discuss challenges associated with measurement of cell-to-cell signaling molecules in the nervous system, and advocate for a decrease of sample volumes to the nanoliter volume regimen for improved analysis outcomes. We highlight effective approaches for the collection, separation, and detection of such small-volume samples, present strategies for targeted and discovery-oriented research, and describe the required technology advances that will empower future translational science.
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Affiliation(s)
- Elena V Romanova
- Beckman Institute for Advanced Science and Technology and the Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Jordan T Aerts
- Beckman Institute for Advanced Science and Technology and the Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Neuroscience Program, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Callie A Croushore
- Beckman Institute for Advanced Science and Technology and the Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Jonathan V Sweedler
- Beckman Institute for Advanced Science and Technology and the Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Neuroscience Program, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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165
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Aubry G, Lu H. A perspective on optical developments in microfluidic platforms for Caenorhabditis elegans research. BIOMICROFLUIDICS 2014; 8:011301. [PMID: 24753721 PMCID: PMC3977797 DOI: 10.1063/1.4865167] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2013] [Accepted: 01/29/2014] [Indexed: 05/29/2023]
Abstract
Microfluidics offers unique ways of handling and manipulating microorganisms, which has particularly benefited Caenorhabditis elegans research. Optics plays a major role in these microfluidic platforms, not only as a read-out for the biological systems of interest but also as a vehicle for applying perturbations to biological systems. Here, we describe different areas of research in C. elegans developmental biology and behavior neuroscience enabled by microfluidics combined with the optical components. In particular, we highlight the diversity of optical tools and methods in use and the strategies implemented in microfluidics to make the devices compatible with optical techniques. We also offer some thoughts on future challenges in adapting advancements in optics to microfluidic platforms.
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Affiliation(s)
- Guillaume Aubry
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Hang Lu
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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166
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Postsynaptic current bursts instruct action potential firing at a graded synapse. Nat Commun 2013; 4:1911. [PMID: 23715270 PMCID: PMC3683072 DOI: 10.1038/ncomms2925] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2012] [Accepted: 04/24/2013] [Indexed: 11/12/2022] Open
Abstract
Nematode neurons generally produce graded potentials instead of action potentials (APs). It is unclear how the graded potentials control postsynaptic cells under physiological conditions. Here we show that postsynaptic currents (PSCs) frequently occur in bursts at the neuromuscular junction of C. elegans. Cholinergic bursts concur with facilitated AP firing, elevated cytosolic [Ca2+], and contraction of the muscle whereas GABA ergic bursts suppress AP firing. The bursts, distinct from artificially evoked responses, are characterized by a persistent current (the primary component of burst-associated charge transfer)and increased frequency and mean amplitude of PSC events. The persistent current of cholinergic PSC bursts is mostly mediated by levamisole-sensitive acetylcholine receptors, which correlates well with locomotory phenotypes of receptor mutants. Eliminating command interneurons abolishes the bursts whereas mutating SLO-1 K+ channel, a potent presynaptic inhibitor of exocytosis, greatly increases the mean burst duration. These observations suggest that motoneurons control muscle by producing PSC bursts.
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167
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Larsch J, Ventimiglia D, Bargmann CI, Albrecht DR. High-throughput imaging of neuronal activity in Caenorhabditis elegans. Proc Natl Acad Sci U S A 2013; 110:E4266-73. [PMID: 24145415 PMCID: PMC3831453 DOI: 10.1073/pnas.1318325110] [Citation(s) in RCA: 128] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Neuronal responses to sensory inputs can vary based on genotype, development, experience, or stochastic factors. Existing neuronal recording techniques examine a single animal at a time, limiting understanding of the variability and range of potential responses. To scale up neuronal recordings, we here describe a system for simultaneous wide-field imaging of neuronal calcium activity from at least 20 Caenorhabditis elegans animals under precise microfluidic chemical stimulation. This increased experimental throughput was used to perform a systematic characterization of chemosensory neuron responses to multiple odors, odor concentrations, and temporal patterns, as well as responses to pharmacological manipulation. The system allowed recordings from sensory neurons and interneurons in freely moving animals, whose neuronal responses could be correlated with behavior. Wide-field imaging provides a tool for comprehensive circuit analysis with elevated throughput in C. elegans.
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Affiliation(s)
- Johannes Larsch
- Howard Hughes Medical Institute and
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, NY 10065; and
| | - Donovan Ventimiglia
- Howard Hughes Medical Institute and
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, NY 10065; and
| | - Cornelia I. Bargmann
- Howard Hughes Medical Institute and
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, NY 10065; and
| | - Dirk R. Albrecht
- Howard Hughes Medical Institute and
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, NY 10065; and
- Department of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609
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168
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Stirman JN, Harker B, Lu H, Crane MM. Animal microsurgery using microfluidics. Curr Opin Biotechnol 2013; 25:24-9. [PMID: 24484877 DOI: 10.1016/j.copbio.2013.08.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2013] [Accepted: 08/14/2013] [Indexed: 10/26/2022]
Abstract
Small multicellular genetic organisms form a central part of modern biological research. Using these small organisms provides significant advantages in genetic tractability, manipulation, lifespan and cost. Although the small size is generally advantageous, it can make procedures such as surgeries both time consuming and labor intensive. Over the past few years there have been dramatic improvements in microfluidic technologies that enable significant improvements in microsurgery and interrogation of small multicellular model organisms.
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Affiliation(s)
- Jeffrey N Stirman
- Carolina Institute for Developmental Disabilities, University of North Carolina, Chapel Hill, NC, USA; Neuroscience Center, University of North Carolina, Chapel Hill, NC, USA; Department of Cell and Molecular Physiology, University of North Carolina, Chapel Hill, NC, USA
| | - Bethany Harker
- Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, UK
| | - Hang Lu
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA
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169
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Track-a-worm, an open-source system for quantitative assessment of C. elegans locomotory and bending behavior. PLoS One 2013; 8:e69653. [PMID: 23922769 PMCID: PMC3724933 DOI: 10.1371/journal.pone.0069653] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Accepted: 06/11/2013] [Indexed: 12/30/2022] Open
Abstract
A major challenge of neuroscience is to understand the circuit and gene bases of behavior. C. elegans is commonly used as a model system to investigate how various gene products function at specific tissue, cellular, and synaptic foci to produce complicated locomotory and bending behavior. The investigation generally requires quantitative behavioral analyses using an automated single-worm tracker, which constantly records and analyzes the position and body shape of a freely moving worm at a high magnification. Many single-worm trackers have been developed to meet lab-specific needs, but none has been widely implemented for various reasons, such as hardware difficult to assemble, and software lacking sufficient functionality, having closed source code, or using a programming language that is not broadly accessible. The lack of a versatile system convenient for wide implementation makes data comparisons difficult and compels other labs to develop new worm trackers. Here we describe Track-A-Worm, a system rich in functionality, open in source code, and easy to use. The system includes plug-and-play hardware (a stereomicroscope, a digital camera and a motorized stage), custom software written to run with Matlab in Windows 7, and a detailed user manual. Grayscale images are automatically converted to binary images followed by head identification and placement of 13 markers along a deduced spline. The software can extract and quantify a variety of parameters, including distance traveled, average speed, distance/time/speed of forward and backward locomotion, frequency and amplitude of dominant bends, overall bending activities measured as root mean square, and sum of all bends. It also plots worm travel path, bend trace, and bend frequency spectrum. All functionality is performed through graphical user interfaces and data is exported to clearly-annotated and documented Excel files. These features make Track-A-Worm a good candidate for implementation in other labs.
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170
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Nagy S, Wright C, Tramm N, Labello N, Burov S, Biron D. A longitudinal study of Caenorhabditis elegans larvae reveals a novel locomotion switch, regulated by G(αs) signaling. eLife 2013; 2:e00782. [PMID: 23840929 PMCID: PMC3699835 DOI: 10.7554/elife.00782] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2013] [Accepted: 05/28/2013] [Indexed: 11/25/2022] Open
Abstract
Despite their simplicity, longitudinal studies of invertebrate models are rare. We thus sought to characterize behavioral trends of Caenorhabditis elegans, from the mid fourth larval stage through the mid young adult stage. We found that, outside of lethargus, animals exhibited abrupt switching between two distinct behavioral states: active wakefulness and quiet wakefulness. The durations of epochs of active wakefulness exhibited non-Poisson statistics. Increased Gαs signaling stabilized the active wakefulness state before, during and after lethargus. In contrast, decreased Gαs signaling, decreased neuropeptide release, or decreased CREB activity destabilized active wakefulness outside of, but not during, lethargus. Taken together, our findings support a model in which protein kinase A (PKA) stabilizes active wakefulness, at least in part through two of its downstream targets: neuropeptide release and CREB. However, during lethargus, when active wakefulness is strongly suppressed, the native role of PKA signaling in modulating locomotion and quiescence may be minor. DOI:http://dx.doi.org/10.7554/eLife.00782.001 The roundworm C. elegans is a key model organism in neuroscience. It has a simple nervous system, made up of just 302 neurons, and was the first multicellular organism to have its genome fully sequenced. The lifecycle of C. elegans begins with an embryonic stage, followed by four larval stages and then adulthood, and worms can progress through this cycle in only three days. However, relatively little is known about how the behaviour of the worms varies across these distinct developmental phases. The body wall of C. elegans contains pairs of muscles that extend along its length, and when waves of muscle contraction travel along its body, the worm undergoes a sinusoidal pattern of movement. A signalling cascade involving a molecule called protein kinase A is thought to help control these movements, and upregulation of this cascade has been shown to increase locomotion. Now, Nagy et al. have analysed the movement of C. elegans during these different stages of development. This involved developing an image processing tool that can analyze the position and posture of a worm’s body in each of three million (or more) images per day. Using this tool, which is called PyCelegans, Nagy et al. identified two behavioral macro-states in one of the larval forms of C. elegans: these states, which can persist for hours, are referred to as active wakefulness and quiet wakefulness. During periods of active wakefulness, the worms spent most (but not all) of their time moving forwards; during quiet wakefulness, they remained largely still. The worms switched abruptly between these two states, and the transition seemed to be regulated by PKA signaling. By using PyCelegans to compare locomotion in worms with mutations in genes encoding various components of this pathway, Nagy et al. showed that mutants with increased PKA activity spent more time in a state of active wakefulness, while the opposite was true for worms with mutations that reduced PKA activity. In addition to providing new insights into the control of locomotion in C. elegans, this study has provided a new open-source PyCelegans suite of tools, which are available to be extended and adapted by other researchers for new uses. DOI:http://dx.doi.org/10.7554/eLife.00782.002
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Affiliation(s)
- Stanislav Nagy
- Institute for Biophysical Dynamics, University of Chicago , Chicago , United States
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171
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Philbrook A, Barbagallo B, Francis MM. A tale of two receptors: Dual roles for ionotropic acetylcholine receptors in regulating motor neuron excitation and inhibition. WORM 2013; 2:e25765. [PMID: 24778941 PMCID: PMC3875653 DOI: 10.4161/worm.25765] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2013] [Accepted: 07/15/2013] [Indexed: 11/29/2022]
Abstract
Nicotinic or ionotropic acetylcholine receptors (iAChRs) mediate excitatory signaling throughout the nervous system, and the heterogeneity of these receptors contributes to their multifaceted roles. Our recent work has characterized a single iAChR subunit, ACR-12, which contributes to two distinct iAChR subtypes within the C. elegans motor circuit. These two receptor subtypes regulate the coordinated activity of excitatory (cholinergic) and inhibitory (GABAergic) motor neurons. We have shown that the iAChR subunit ACR-12 is differentially expressed in both cholinergic and GABAergic motor neurons within the motor circuit. In cholinergic motor neurons, ACR-12 is incorporated into the previously characterized ACR-2 heteromeric receptor, which shows non-synaptic localization patterns and plays a modulatory role in controlling circuit function.1 In contrast, a second population of ACR-12-containing receptors in GABAergic motor neurons, ACR-12GABA, shows synaptic expression and regulates inhibitory signaling.2 Here, we discuss the two ACR-12-containing receptor subtypes, their distinct expression patterns, and functional roles in the C. elegans motor circuit. We anticipate our continuing studies of iAChRs in the C. elegans motor circuit will lead to novel insights into iAChR function in the nervous system as well as mechanisms for their regulation.
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Affiliation(s)
- Alison Philbrook
- Department of Neurobiology; UMass Medical School; Worcester, MA USA
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172
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Hyperactivation of B-type motor neurons results in aberrant synchrony of the Caenorhabditis elegans motor circuit. J Neurosci 2013; 33:5319-25. [PMID: 23516296 DOI: 10.1523/jneurosci.4017-12.2013] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Excitatory acetylcholine motor neurons drive Caenorhabditis elegans locomotion. Coordinating the activation states of the backward-driving A and forward-driving B class motor neurons is critical for generating sinusoidal and directional locomotion. Here, we show by in vivo calcium imaging that expression of a hyperactive, somatodendritic ionotropic acetylcholine receptor ACR-2(gf) in A and B class motor neurons induces aberrant synchronous activity in both ventral- and dorsal-innervating B and A class motor neurons. Expression of ACR-2(gf) in either ventral- or dorsal-innervating B neurons is sufficient for triggering the aberrant synchrony that results in arrhythmic convulsions. Silencing of AVB, the premotor interneurons that innervate B motor neurons suppresses ACR-2(gf)-dependent convulsion; activating AVB by channelrhodopsin induces the onset of convulsion. These results support that the activity state of B motor neurons plays an instructive role for the coordination of motor circuit.
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173
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Husson SJ, Gottschalk A, Leifer AM. Optogenetic manipulation of neural activity in C. elegans: from synapse to circuits and behaviour. Biol Cell 2013; 105:235-50. [PMID: 23458457 DOI: 10.1111/boc.201200069] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Accepted: 02/22/2013] [Indexed: 11/30/2022]
Abstract
The emerging field of optogenetics allows for optical activation or inhibition of excitable cells. In 2005, optogenetic proteins were expressed in the nematode Caenorhabditis elegans for the first time. Since then, C. elegans has served as a powerful platform upon which to conduct optogenetic investigations of synaptic function, circuit dynamics and the neuronal basis of behaviour. The C. elegans nervous system, consisting of 302 neurons, whose connectivity and morphology has been mapped completely, drives a rich repertoire of behaviours that are quantifiable by video microscopy. This model organism's compact nervous system, quantifiable behaviour, genetic tractability and optical accessibility make it especially amenable to optogenetic interrogation. Channelrhodopsin-2 (ChR2), halorhodopsin (NpHR/Halo) and other common optogenetic proteins have all been expressed in C. elegans. Moreover, recent advances leveraging molecular genetics and patterned light illumination have now made it possible to target photoactivation and inhibition to single cells and to do so in worms as they behave freely. Here, we describe techniques and methods for optogenetic manipulation in C. elegans. We review recent work using optogenetics and C. elegans for neuroscience investigations at the level of synapses, circuits and behaviour.
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Affiliation(s)
- Steven J Husson
- Functional Genomics and Proteomics, Department of Biology, KU Leuven, Leuven B-3000, Belgium
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174
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Gjorgjieva J, Berni J, Evers JF, Eglen SJ. Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling. Front Comput Neurosci 2013; 7:24. [PMID: 23576980 PMCID: PMC3616270 DOI: 10.3389/fncom.2013.00024] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Accepted: 03/14/2013] [Indexed: 12/22/2022] Open
Abstract
Drosophila larvae crawl by peristaltic waves of muscle contractions, which propagate along the animal body and involve the simultaneous contraction of the left and right side of each segment. Coordinated propagation of contraction does not require sensory input, suggesting that movement is generated by a central pattern generator (CPG). We characterized crawling behavior of newly hatched Drosophila larvae by quantifying timing and duration of segmental boundary contractions. We developed a CPG network model that recapitulates these patterns based on segmentally repeated units of excitatory and inhibitory (EI) neuronal populations coupled with immediate neighboring segments. A single network with symmetric coupling between neighboring segments succeeded in generating both forward and backward propagation of activity. The CPG network was robust to changes in amplitude and variability of connectivity strength. Introducing sensory feedback via "stretch-sensitive" neurons improved wave propagation properties such as speed of propagation and segmental contraction duration as observed experimentally. Sensory feedback also restored propagating activity patterns when an inappropriately tuned CPG network failed to generate waves. Finally, in a two-sided CPG model we demonstrated that two types of connectivity could synchronize the activity of two independent networks: connections from excitatory neurons on one side to excitatory contralateral neurons (E to E), and connections from inhibitory neurons on one side to excitatory contralateral neurons (I to E). To our knowledge, such I to E connectivity has not yet been found in any experimental system; however, it provides the most robust mechanism to synchronize activity between contralateral CPGs in our model. Our model provides a general framework for studying the conditions under which a single locally coupled network generates bilaterally synchronized and longitudinally propagating waves in either direction.
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Affiliation(s)
- Julijana Gjorgjieva
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of CambridgeCambridge, UK
| | - Jimena Berni
- Department of Zoology, University of CambridgeCambridge, UK
| | | | - Stephen J. Eglen
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of CambridgeCambridge, UK
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175
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Abstract
Animals use a form of sensory feedback termed proprioception to monitor their body position and modify the motor programs that control movement. In this issue of Neuron, Wen et al. (2012) provide evidence that a subset of motor neurons function as proprioceptors in C. elegans, where B-type motor neurons sense body curvature to control the bending movements that drive forward locomotion.
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Affiliation(s)
- Martyn Goulding
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
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