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For: Kettenberger H, Armache KJ, Cramer P. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 2005;16:955-65. [PMID: 15610738 DOI: 10.1016/j.molcel.2004.11.040] [Citation(s) in RCA: 345] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2004] [Revised: 11/19/2004] [Accepted: 11/23/2004] [Indexed: 01/22/2023]
Number Cited by Other Article(s)
201
Hall RJ, Nogales E, Glaeser RM. Accurate modeling of single-particle cryo-EM images quantitates the benefits expected from using Zernike phase contrast. J Struct Biol 2011;174:468-75. [PMID: 21463690 DOI: 10.1016/j.jsb.2011.03.020] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Revised: 03/28/2011] [Accepted: 03/29/2011] [Indexed: 11/26/2022]
202
Bernecky C, Grob P, Ebmeier CC, Nogales E, Taatjes DJ. Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biol 2011;9:e1000603. [PMID: 21468301 PMCID: PMC3066130 DOI: 10.1371/journal.pbio.1000603] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Accepted: 02/04/2011] [Indexed: 12/21/2022]  Open
203
Templated nucleoside triphosphate binding to a noncatalytic site on RNA polymerase regulates transcription. Proc Natl Acad Sci U S A 2011;108:6079-84. [PMID: 21447716 DOI: 10.1073/pnas.1011274108] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
204
Ruan W, Lehmann E, Thomm M, Kostrewa D, Cramer P. Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J Biol Chem 2011;286:18701-7. [PMID: 21454497 DOI: 10.1074/jbc.m111.222273] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
205
Martinez-Rucobo FW, Sainsbury S, Cheung ACM, Cramer P. Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. EMBO J 2011;30:1302-10. [PMID: 21386817 PMCID: PMC3094117 DOI: 10.1038/emboj.2011.64] [Citation(s) in RCA: 197] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2011] [Accepted: 02/17/2011] [Indexed: 01/24/2023]  Open
206
Jovanovic M, Burrows PC, Bose D, Cámara B, Wiesler S, Zhang X, Wigneshweraraj S, Weinzierl ROJ, Buck M. Activity map of the Escherichia coli RNA polymerase bridge helix. J Biol Chem 2011;286:14469-79. [PMID: 21357417 PMCID: PMC3077646 DOI: 10.1074/jbc.m110.212902] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
207
Cheung ACM, Cramer P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 2011;471:249-53. [PMID: 21346759 DOI: 10.1038/nature09785] [Citation(s) in RCA: 282] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2010] [Accepted: 12/23/2010] [Indexed: 12/12/2022]
208
Feig M, Burton ZF. RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophys J 2011;99:2577-86. [PMID: 20959099 DOI: 10.1016/j.bpj.2010.08.010] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2010] [Revised: 07/28/2010] [Accepted: 08/10/2010] [Indexed: 10/18/2022]  Open
209
Roghanian M, Yuzenkova Y, Zenkin N. Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre. Nucleic Acids Res 2011;39:4352-9. [PMID: 21266474 PMCID: PMC3105419 DOI: 10.1093/nar/gkq1359] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
210
Wang F, Greene EC. Single-molecule studies of transcription: from one RNA polymerase at a time to the gene expression profile of a cell. J Mol Biol 2011;412:814-31. [PMID: 21255583 DOI: 10.1016/j.jmb.2011.01.024] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2010] [Revised: 01/05/2011] [Accepted: 01/08/2011] [Indexed: 12/30/2022]
211
Cramer P. Towards molecular systems biology of gene transcription and regulation. Biol Chem 2011;391:731-5. [PMID: 20482321 DOI: 10.1515/bc.2010.094] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
212
Werner F, Grohmann D. Evolution of multisubunit RNA polymerases in the three domains of life. Nat Rev Microbiol 2011;9:85-98. [PMID: 21233849 DOI: 10.1038/nrmicro2507] [Citation(s) in RCA: 313] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
213
Tagami S, Sekine SI, Kumarevel T, Hino N, Murayama Y, Kamegamori S, Yamamoto M, Sakamoto K, Yokoyama S. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein. Nature 2010;468:978-82. [PMID: 21124318 DOI: 10.1038/nature09573] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Accepted: 10/12/2010] [Indexed: 11/09/2022]
214
Fernández-Tornero C, Böttcher B, Rashid UJ, Steuerwald U, Flörchinger B, Devos DP, Lindner D, Müller CW. Conformational flexibility of RNA polymerase III during transcriptional elongation. EMBO J 2010;29:3762-72. [PMID: 20967027 DOI: 10.1038/emboj.2010.266] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2010] [Accepted: 09/27/2010] [Indexed: 01/21/2023]  Open
215
Jensen A, Mullenders LHF. Transcription factor IIS impacts UV-inhibited transcription. DNA Repair (Amst) 2010;9:1142-50. [PMID: 20729154 DOI: 10.1016/j.dnarep.2010.08.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2010] [Revised: 07/08/2010] [Accepted: 08/03/2010] [Indexed: 11/25/2022]
216
Pupov DV, Kulbachinskiy AV. Structural dynamics of the active center of multisubunit RNA polymerases during RNA synthesis and proofreading. Mol Biol 2010. [DOI: 10.1134/s0026893310040023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
217
Ruprich-Robert G, Thuriaux P. Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases. Nucleic Acids Res 2010;38:4559-69. [PMID: 20360047 PMCID: PMC2919709 DOI: 10.1093/nar/gkq201] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2009] [Revised: 03/09/2010] [Accepted: 03/09/2010] [Indexed: 11/23/2022]  Open
218
Farlow J, Ichou MA, Huggins J, Ibrahim S. Comparative whole genome sequence analysis of wild-type and cidofovir-resistant monkeypoxvirus. Virol J 2010;7:110. [PMID: 20509894 PMCID: PMC2890524 DOI: 10.1186/1743-422x-7-110] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2010] [Accepted: 05/28/2010] [Indexed: 11/10/2022]  Open
219
Lasker K, Phillips JL, Russel D, Velázquez-Muriel J, Schneidman-Duhovny D, Tjioe E, Webb B, Schlessinger A, Sali A. Integrative structure modeling of macromolecular assemblies from proteomics data. Mol Cell Proteomics 2010;9:1689-702. [PMID: 20507923 DOI: 10.1074/mcp.r110.000067] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
220
Grohmann D, Werner F. Hold on!: RNA polymerase interactions with the nascent RNA modulate transcription elongation and termination. RNA Biol 2010;7:310-5. [PMID: 20473037 DOI: 10.4161/rna.7.3.11912] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
221
Kelly DF, Dukovski D, Walz T. Strategy for the use of affinity grids to prepare non-His-tagged macromolecular complexes for single-particle electron microscopy. J Mol Biol 2010;400:675-81. [PMID: 20562026 DOI: 10.1016/j.jmb.2010.05.045] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2010] [Revised: 05/11/2010] [Accepted: 05/18/2010] [Indexed: 11/24/2022]
222
Pupov D, Miropolskaya N, Sevostyanova A, Bass I, Artsimovitch I, Kulbachinskiy A. Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation. Nucleic Acids Res 2010;38:5784-96. [PMID: 20457751 PMCID: PMC2943606 DOI: 10.1093/nar/gkq355] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
223
Meyer KD, Lin SC, Bernecky C, Gao Y, Taatjes DJ. p53 activates transcription by directing structural shifts in Mediator. Nat Struct Mol Biol 2010;17:753-60. [PMID: 20453859 PMCID: PMC2932482 DOI: 10.1038/nsmb.1816] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2009] [Accepted: 03/23/2010] [Indexed: 12/24/2022]
224
Yuzenkova Y, Bochkareva A, Tadigotla VR, Roghanian M, Zorov S, Severinov K, Zenkin N. Stepwise mechanism for transcription fidelity. BMC Biol 2010;8:54. [PMID: 20459653 PMCID: PMC2874521 DOI: 10.1186/1741-7007-8-54] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2010] [Accepted: 05/07/2010] [Indexed: 11/26/2022]  Open
225
Grohmann D, Klose D, Klare JP, Kay CWM, Steinhoff HJ, Werner F. RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study. J Am Chem Soc 2010;132:5954-5. [DOI: 10.1021/ja101663d] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
226
Proshkina GM, Shpakovskiĭ GV. [The functional interaction of an RNA polymerase II Rpb11 subunit with the Med18 subunit (Srb5) of the Saccharomyces cerevisiae mediator complex]. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2010;35:572-6. [PMID: 19928061 DOI: 10.1134/s1068162009040153] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
227
Epshtein V, Dutta D, Wade J, Nudler E. An allosteric mechanism of Rho-dependent transcription termination. Nature 2010;463:245-9. [PMID: 20075920 DOI: 10.1038/nature08669] [Citation(s) in RCA: 151] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2009] [Accepted: 11/16/2009] [Indexed: 12/30/2022]
228
Belogurov GA, Sevostyanova A, Svetlov V, Artsimovitch I. Functional regions of the N-terminal domain of the antiterminator RfaH. Mol Microbiol 2010;76:286-301. [PMID: 20132437 PMCID: PMC2871177 DOI: 10.1111/j.1365-2958.2010.07056.x] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
229
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: sequence analysis. J Mol Biol 2010;395:671-85. [PMID: 19895820 PMCID: PMC2813377 DOI: 10.1016/j.jmb.2009.10.062] [Citation(s) in RCA: 135] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2009] [Revised: 10/22/2009] [Accepted: 10/26/2009] [Indexed: 11/21/2022]
230
Kireeva M, Kashlev M, Burton ZF. Translocation by multi-subunit RNA polymerases. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2010;1799:389-401. [PMID: 20097318 DOI: 10.1016/j.bbagrm.2010.01.007] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2009] [Revised: 01/14/2010] [Accepted: 01/14/2010] [Indexed: 11/30/2022]
231
Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, Rasmussen M, Lariviere L, Bukowski-Wills JC, Nilges M, Cramer P, Rappsilber J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J 2010;29:717-26. [PMID: 20094031 PMCID: PMC2810376 DOI: 10.1038/emboj.2009.401] [Citation(s) in RCA: 316] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2009] [Accepted: 12/10/2009] [Indexed: 11/09/2022]  Open
232
A practical guide to the use of monolayer purification and affinity grids. Methods Enzymol 2010;481:83-107. [PMID: 20887854 DOI: 10.1016/s0076-6879(10)81004-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
233
Zhang J, Palangat M, Landick R. Role of the RNA polymerase trigger loop in catalysis and pausing. Nat Struct Mol Biol 2010;17:99-104. [PMID: 19966797 PMCID: PMC2904963 DOI: 10.1038/nsmb.1732] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2009] [Accepted: 11/09/2009] [Indexed: 11/09/2022]
234
Grünberg S, Reich C, Zeller ME, Bartlett MS, Thomm M. Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes. Nucleic Acids Res 2009;38:1950-63. [PMID: 20040576 PMCID: PMC2847245 DOI: 10.1093/nar/gkp1190] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
235
Tagami S, Sekine SI, Kumarevel T, Yamamoto M, Yokoyama S. Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009;66:64-8. [PMID: 20057074 DOI: 10.1107/s1744309109049215] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Accepted: 11/18/2009] [Indexed: 11/10/2022]
236
Carter R, Drouin G. Structural differentiation of the three eukaryotic RNA polymerases. Genomics 2009;94:388-96. [DOI: 10.1016/j.ygeno.2009.08.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2009] [Revised: 08/18/2009] [Accepted: 08/22/2009] [Indexed: 12/27/2022]
237
Erie DA, Kennedy SR. Forks, pincers, and triggers: the tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases. Curr Opin Struct Biol 2009;19:708-14. [PMID: 19913407 PMCID: PMC3979713 DOI: 10.1016/j.sbi.2009.10.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2009] [Revised: 10/12/2009] [Accepted: 10/14/2009] [Indexed: 01/22/2023]
238
RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature 2009;462:323-30. [PMID: 19820686 DOI: 10.1038/nature08548] [Citation(s) in RCA: 241] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2009] [Accepted: 10/01/2009] [Indexed: 11/08/2022]
239
Kassavetis GA, Prakash P, Shim E. The C53/C37 subcomplex of RNA polymerase III lies near the active site and participates in promoter opening. J Biol Chem 2009;285:2695-706. [PMID: 19940126 DOI: 10.1074/jbc.m109.074013] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
240
Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. Nat Struct Mol Biol 2009;16:1272-8. [PMID: 19935686 PMCID: PMC2919570 DOI: 10.1038/nsmb.1689] [Citation(s) in RCA: 133] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2009] [Accepted: 09/10/2009] [Indexed: 12/24/2022]
241
Sydow JF, Cramer P. RNA polymerase fidelity and transcriptional proofreading. Curr Opin Struct Biol 2009;19:732-9. [PMID: 19914059 DOI: 10.1016/j.sbi.2009.10.009] [Citation(s) in RCA: 107] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2009] [Revised: 10/15/2009] [Accepted: 10/15/2009] [Indexed: 02/06/2023]
242
Hirtreiter A, Grohmann D, Werner F. Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro. Nucleic Acids Res 2009;38:585-96. [PMID: 19906731 PMCID: PMC2811020 DOI: 10.1093/nar/gkp928] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
243
Vassylyev DG. Elongation by RNA polymerase: a race through roadblocks. Curr Opin Struct Biol 2009;19:691-700. [PMID: 19896365 DOI: 10.1016/j.sbi.2009.10.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2009] [Revised: 09/10/2009] [Accepted: 10/07/2009] [Indexed: 01/22/2023]
244
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: structural analysis. J Mol Biol 2009;395:686-704. [PMID: 19895816 DOI: 10.1016/j.jmb.2009.10.063] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2009] [Revised: 10/24/2009] [Accepted: 10/26/2009] [Indexed: 11/17/2022]
245
Svetlov V, Nudler E. Macromolecular micromovements: how RNA polymerase translocates. Curr Opin Struct Biol 2009;19:701-7. [PMID: 19889534 DOI: 10.1016/j.sbi.2009.10.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Revised: 09/12/2009] [Accepted: 10/07/2009] [Indexed: 01/22/2023]
246
Allosteric control of catalysis by the F loop of RNA polymerase. Proc Natl Acad Sci U S A 2009;106:18942-7. [PMID: 19855007 DOI: 10.1073/pnas.0905402106] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
247
Damsma GE, Cramer P. Molecular basis of transcriptional mutagenesis at 8-oxoguanine. J Biol Chem 2009;284:31658-63. [PMID: 19758983 DOI: 10.1074/jbc.m109.022764] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
248
Rhee AC, Somerlot BH, Parimi N, Gott JM. Distinct roles for sequences upstream of and downstream from Physarum editing sites. RNA (NEW YORK, N.Y.) 2009;15:1753-1765. [PMID: 19605532 PMCID: PMC2743052 DOI: 10.1261/rna.1668309] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2009] [Accepted: 06/06/2009] [Indexed: 05/28/2023]
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Dengl S, Cramer P. Torpedo nuclease Rat1 is insufficient to terminate RNA polymerase II in vitro. J Biol Chem 2009;284:21270-9. [PMID: 19535338 PMCID: PMC2755851 DOI: 10.1074/jbc.m109.013847] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2009] [Revised: 04/28/2009] [Indexed: 11/06/2022]  Open
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Sydow JF, Brueckner F, Cheung ACM, Damsma GE, Dengl S, Lehmann E, Vassylyev D, Cramer P. Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol Cell 2009;34:710-21. [PMID: 19560423 DOI: 10.1016/j.molcel.2009.06.002] [Citation(s) in RCA: 147] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2009] [Revised: 05/05/2009] [Accepted: 06/05/2009] [Indexed: 11/17/2022]
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