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For: Kettenberger H, Armache KJ, Cramer P. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 2005;16:955-65. [PMID: 15610738 DOI: 10.1016/j.molcel.2004.11.040] [Citation(s) in RCA: 345] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2004] [Revised: 11/19/2004] [Accepted: 11/23/2004] [Indexed: 01/22/2023]
Number Cited by Other Article(s)
201
Jovanovic M, Burrows PC, Bose D, Cámara B, Wiesler S, Zhang X, Wigneshweraraj S, Weinzierl ROJ, Buck M. Activity map of the Escherichia coli RNA polymerase bridge helix. J Biol Chem 2011;286:14469-79. [PMID: 21357417 PMCID: PMC3077646 DOI: 10.1074/jbc.m110.212902] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Revised: 02/24/2011] [Indexed: 11/15/2022]  Open
202
Lane LA, Fernández-Tornero C, Zhou M, Morgner N, Ptchelkine D, Steuerwald U, Politis A, Lindner D, Gvozdenovic J, Gavin AC, Müller CW, Robinson CV. Mass spectrometry reveals stable modules in holo and apo RNA polymerases I and III. Structure 2011;19:90-100. [PMID: 21220119 DOI: 10.1016/j.str.2010.11.009] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2010] [Revised: 10/15/2010] [Accepted: 11/09/2010] [Indexed: 12/27/2022]
203
Unravelling the means to an end: RNA polymerase II transcription termination. Nat Rev Mol Cell Biol 2011;12:283-94. [PMID: 21487437 DOI: 10.1038/nrm3098] [Citation(s) in RCA: 202] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
204
Bernecky C, Grob P, Ebmeier CC, Nogales E, Taatjes DJ. Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biol 2011;9:e1000603. [PMID: 21468301 PMCID: PMC3066130 DOI: 10.1371/journal.pbio.1000603] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Accepted: 02/04/2011] [Indexed: 12/21/2022]  Open
205
Templated nucleoside triphosphate binding to a noncatalytic site on RNA polymerase regulates transcription. Proc Natl Acad Sci U S A 2011;108:6079-84. [PMID: 21447716 DOI: 10.1073/pnas.1011274108] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
206
Ruan W, Lehmann E, Thomm M, Kostrewa D, Cramer P. Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J Biol Chem 2011;286:18701-7. [PMID: 21454497 DOI: 10.1074/jbc.m111.222273] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
207
Martinez-Rucobo FW, Sainsbury S, Cheung ACM, Cramer P. Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. EMBO J 2011;30:1302-10. [PMID: 21386817 PMCID: PMC3094117 DOI: 10.1038/emboj.2011.64] [Citation(s) in RCA: 197] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2011] [Accepted: 02/17/2011] [Indexed: 01/24/2023]  Open
208
Cheung ACM, Cramer P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 2011;471:249-53. [PMID: 21346759 DOI: 10.1038/nature09785] [Citation(s) in RCA: 282] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2010] [Accepted: 12/23/2010] [Indexed: 12/12/2022]
209
Larson MH, Landick R, Block SM. Single-molecule studies of RNA polymerase: one singular sensation, every little step it takes. Mol Cell 2011;41:249-62. [PMID: 21292158 PMCID: PMC3056354 DOI: 10.1016/j.molcel.2011.01.008] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2010] [Revised: 12/09/2010] [Accepted: 01/05/2011] [Indexed: 11/17/2022]
210
Werner F, Grohmann D. Evolution of multisubunit RNA polymerases in the three domains of life. Nat Rev Microbiol 2011;9:85-98. [PMID: 21233849 DOI: 10.1038/nrmicro2507] [Citation(s) in RCA: 313] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
211
Feig M, Burton ZF. RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophys J 2011;99:2577-86. [PMID: 20959099 DOI: 10.1016/j.bpj.2010.08.010] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2010] [Revised: 07/28/2010] [Accepted: 08/10/2010] [Indexed: 10/18/2022]  Open
212
Cramer P. Towards molecular systems biology of gene transcription and regulation. Biol Chem 2011;391:731-5. [PMID: 20482321 DOI: 10.1515/bc.2010.094] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
213
Tagami S, Sekine SI, Kumarevel T, Hino N, Murayama Y, Kamegamori S, Yamamoto M, Sakamoto K, Yokoyama S. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein. Nature 2010;468:978-82. [PMID: 21124318 DOI: 10.1038/nature09573] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Accepted: 10/12/2010] [Indexed: 11/09/2022]
214
Fernández-Tornero C, Böttcher B, Rashid UJ, Steuerwald U, Flörchinger B, Devos DP, Lindner D, Müller CW. Conformational flexibility of RNA polymerase III during transcriptional elongation. EMBO J 2010;29:3762-72. [PMID: 20967027 DOI: 10.1038/emboj.2010.266] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2010] [Accepted: 09/27/2010] [Indexed: 01/21/2023]  Open
215
Jensen A, Mullenders LHF. Transcription factor IIS impacts UV-inhibited transcription. DNA Repair (Amst) 2010;9:1142-50. [PMID: 20729154 DOI: 10.1016/j.dnarep.2010.08.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2010] [Revised: 07/08/2010] [Accepted: 08/03/2010] [Indexed: 11/25/2022]
216
Pupov DV, Kulbachinskiy AV. Structural dynamics of the active center of multisubunit RNA polymerases during RNA synthesis and proofreading. Mol Biol 2010. [DOI: 10.1134/s0026893310040023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
217
Ruprich-Robert G, Thuriaux P. Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases. Nucleic Acids Res 2010;38:4559-69. [PMID: 20360047 PMCID: PMC2919709 DOI: 10.1093/nar/gkq201] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2009] [Revised: 03/09/2010] [Accepted: 03/09/2010] [Indexed: 11/23/2022]  Open
218
Kelly DF, Dukovski D, Walz T. Strategy for the use of affinity grids to prepare non-His-tagged macromolecular complexes for single-particle electron microscopy. J Mol Biol 2010;400:675-81. [PMID: 20562026 PMCID: PMC2923398 DOI: 10.1016/j.jmb.2010.05.045] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2010] [Revised: 05/11/2010] [Accepted: 05/18/2010] [Indexed: 11/24/2022]
219
Meyer KD, Lin SC, Bernecky C, Gao Y, Taatjes DJ. p53 activates transcription by directing structural shifts in Mediator. Nat Struct Mol Biol 2010;17:753-60. [PMID: 20453859 PMCID: PMC2932482 DOI: 10.1038/nsmb.1816] [Citation(s) in RCA: 105] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2009] [Accepted: 03/23/2010] [Indexed: 12/24/2022]
220
Farlow J, Ichou MA, Huggins J, Ibrahim S. Comparative whole genome sequence analysis of wild-type and cidofovir-resistant monkeypoxvirus. Virol J 2010;7:110. [PMID: 20509894 PMCID: PMC2890524 DOI: 10.1186/1743-422x-7-110] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2010] [Accepted: 05/28/2010] [Indexed: 11/10/2022]  Open
221
Lasker K, Phillips JL, Russel D, Velázquez-Muriel J, Schneidman-Duhovny D, Tjioe E, Webb B, Schlessinger A, Sali A. Integrative structure modeling of macromolecular assemblies from proteomics data. Mol Cell Proteomics 2010;9:1689-702. [PMID: 20507923 DOI: 10.1074/mcp.r110.000067] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
222
Pupov D, Miropolskaya N, Sevostyanova A, Bass I, Artsimovitch I, Kulbachinskiy A. Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation. Nucleic Acids Res 2010;38:5784-96. [PMID: 20457751 PMCID: PMC2943606 DOI: 10.1093/nar/gkq355] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
223
Yuzenkova Y, Bochkareva A, Tadigotla VR, Roghanian M, Zorov S, Severinov K, Zenkin N. Stepwise mechanism for transcription fidelity. BMC Biol 2010;8:54. [PMID: 20459653 PMCID: PMC2874521 DOI: 10.1186/1741-7007-8-54] [Citation(s) in RCA: 89] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2010] [Accepted: 05/07/2010] [Indexed: 11/26/2022]  Open
224
Grohmann D, Werner F. Hold on!: RNA polymerase interactions with the nascent RNA modulate transcription elongation and termination. RNA Biol 2010;7:310-5. [PMID: 20473037 PMCID: PMC2965726 DOI: 10.4161/rna.7.3.11912] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
225
Grohmann D, Klose D, Klare JP, Kay CWM, Steinhoff HJ, Werner F. RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study. J Am Chem Soc 2010;132:5954-5. [DOI: 10.1021/ja101663d] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
226
Proshkina GM, Shpakovskiĭ GV. [The functional interaction of an RNA polymerase II Rpb11 subunit with the Med18 subunit (Srb5) of the Saccharomyces cerevisiae mediator complex]. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2010;35:572-6. [PMID: 19928061 DOI: 10.1134/s1068162009040153] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
227
Epshtein V, Dutta D, Wade J, Nudler E. An allosteric mechanism of Rho-dependent transcription termination. Nature 2010;463:245-9. [PMID: 20075920 DOI: 10.1038/nature08669] [Citation(s) in RCA: 152] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2009] [Accepted: 11/16/2009] [Indexed: 12/30/2022]
228
Belogurov GA, Sevostyanova A, Svetlov V, Artsimovitch I. Functional regions of the N-terminal domain of the antiterminator RfaH. Mol Microbiol 2010;76:286-301. [PMID: 20132437 PMCID: PMC2871177 DOI: 10.1111/j.1365-2958.2010.07056.x] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
229
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: sequence analysis. J Mol Biol 2010;395:671-85. [PMID: 19895820 PMCID: PMC2813377 DOI: 10.1016/j.jmb.2009.10.062] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2009] [Revised: 10/22/2009] [Accepted: 10/26/2009] [Indexed: 11/21/2022]
230
Kireeva M, Kashlev M, Burton ZF. Translocation by multi-subunit RNA polymerases. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2010;1799:389-401. [PMID: 20097318 DOI: 10.1016/j.bbagrm.2010.01.007] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2009] [Revised: 01/14/2010] [Accepted: 01/14/2010] [Indexed: 11/30/2022]
231
Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, Rasmussen M, Lariviere L, Bukowski-Wills JC, Nilges M, Cramer P, Rappsilber J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J 2010;29:717-26. [PMID: 20094031 PMCID: PMC2810376 DOI: 10.1038/emboj.2009.401] [Citation(s) in RCA: 321] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2009] [Accepted: 12/10/2009] [Indexed: 11/09/2022]  Open
232
Domecq C, Kireeva M, Archambault J, Kashlev M, Coulombe B, Burton ZF. Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II. Protein Expr Purif 2010;69:83-90. [PMID: 19567268 PMCID: PMC2783771 DOI: 10.1016/j.pep.2009.06.016] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2009] [Accepted: 06/17/2009] [Indexed: 10/20/2022]
233
A practical guide to the use of monolayer purification and affinity grids. Methods Enzymol 2010;481:83-107. [PMID: 20887854 DOI: 10.1016/s0076-6879(10)81004-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
234
Zhang J, Palangat M, Landick R. Role of the RNA polymerase trigger loop in catalysis and pausing. Nat Struct Mol Biol 2010;17:99-104. [PMID: 19966797 PMCID: PMC2904963 DOI: 10.1038/nsmb.1732] [Citation(s) in RCA: 128] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2009] [Accepted: 11/09/2009] [Indexed: 11/09/2022]
235
Grünberg S, Reich C, Zeller ME, Bartlett MS, Thomm M. Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes. Nucleic Acids Res 2009;38:1950-63. [PMID: 20040576 PMCID: PMC2847245 DOI: 10.1093/nar/gkp1190] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
236
Tagami S, Sekine SI, Kumarevel T, Yamamoto M, Yokoyama S. Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009;66:64-8. [PMID: 20057074 DOI: 10.1107/s1744309109049215] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2009] [Accepted: 11/18/2009] [Indexed: 11/10/2022]
237
Carter R, Drouin G. Structural differentiation of the three eukaryotic RNA polymerases. Genomics 2009;94:388-96. [DOI: 10.1016/j.ygeno.2009.08.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2009] [Revised: 08/18/2009] [Accepted: 08/22/2009] [Indexed: 12/27/2022]
238
Erie DA, Kennedy SR. Forks, pincers, and triggers: the tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases. Curr Opin Struct Biol 2009;19:708-14. [PMID: 19913407 PMCID: PMC3979713 DOI: 10.1016/j.sbi.2009.10.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2009] [Revised: 10/12/2009] [Accepted: 10/14/2009] [Indexed: 01/22/2023]
239
RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature 2009;462:323-30. [PMID: 19820686 DOI: 10.1038/nature08548] [Citation(s) in RCA: 243] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2009] [Accepted: 10/01/2009] [Indexed: 11/08/2022]
240
Kassavetis GA, Prakash P, Shim E. The C53/C37 subcomplex of RNA polymerase III lies near the active site and participates in promoter opening. J Biol Chem 2009;285:2695-706. [PMID: 19940126 DOI: 10.1074/jbc.m109.074013] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
241
Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. Nat Struct Mol Biol 2009;16:1272-8. [PMID: 19935686 PMCID: PMC2919570 DOI: 10.1038/nsmb.1689] [Citation(s) in RCA: 135] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2009] [Accepted: 09/10/2009] [Indexed: 12/24/2022]
242
Sydow JF, Cramer P. RNA polymerase fidelity and transcriptional proofreading. Curr Opin Struct Biol 2009;19:732-9. [PMID: 19914059 DOI: 10.1016/j.sbi.2009.10.009] [Citation(s) in RCA: 114] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2009] [Revised: 10/15/2009] [Accepted: 10/15/2009] [Indexed: 02/06/2023]
243
Hirtreiter A, Grohmann D, Werner F. Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro. Nucleic Acids Res 2009;38:585-96. [PMID: 19906731 PMCID: PMC2811020 DOI: 10.1093/nar/gkp928] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
244
Vassylyev DG. Elongation by RNA polymerase: a race through roadblocks. Curr Opin Struct Biol 2009;19:691-700. [PMID: 19896365 DOI: 10.1016/j.sbi.2009.10.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2009] [Revised: 09/10/2009] [Accepted: 10/07/2009] [Indexed: 01/22/2023]
245
Lane WJ, Darst SA. Molecular evolution of multisubunit RNA polymerases: structural analysis. J Mol Biol 2009;395:686-704. [PMID: 19895816 DOI: 10.1016/j.jmb.2009.10.063] [Citation(s) in RCA: 107] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2009] [Revised: 10/24/2009] [Accepted: 10/26/2009] [Indexed: 11/17/2022]
246
Svetlov V, Nudler E. Macromolecular micromovements: how RNA polymerase translocates. Curr Opin Struct Biol 2009;19:701-7. [PMID: 19889534 DOI: 10.1016/j.sbi.2009.10.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Revised: 09/12/2009] [Accepted: 10/07/2009] [Indexed: 01/22/2023]
247
Allosteric control of catalysis by the F loop of RNA polymerase. Proc Natl Acad Sci U S A 2009;106:18942-7. [PMID: 19855007 DOI: 10.1073/pnas.0905402106] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
248
Damsma GE, Cramer P. Molecular basis of transcriptional mutagenesis at 8-oxoguanine. J Biol Chem 2009;284:31658-63. [PMID: 19758983 DOI: 10.1074/jbc.m109.022764] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
249
Rhee AC, Somerlot BH, Parimi N, Gott JM. Distinct roles for sequences upstream of and downstream from Physarum editing sites. RNA (NEW YORK, N.Y.) 2009;15:1753-1765. [PMID: 19605532 PMCID: PMC2743052 DOI: 10.1261/rna.1668309] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2009] [Accepted: 06/06/2009] [Indexed: 05/28/2023]
250
Dengl S, Cramer P. Torpedo nuclease Rat1 is insufficient to terminate RNA polymerase II in vitro. J Biol Chem 2009;284:21270-9. [PMID: 19535338 PMCID: PMC2755851 DOI: 10.1074/jbc.m109.013847] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2009] [Revised: 04/28/2009] [Indexed: 11/06/2022]  Open
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