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Berthold C, Lochte MH, Buchner MR. Transmetalation From Boron to Beryllium in Phosphorus-Based Scorpionate Complexes. Chemistry 2025; 31:e202500673. [PMID: 40084502 PMCID: PMC12043030 DOI: 10.1002/chem.202500673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 03/12/2025] [Accepted: 03/14/2025] [Indexed: 03/16/2025]
Abstract
Investigation of tris(di-iso-propylphosphanylmethyl)phenylborate ([TP(iPr)]-) organo-beryllium complexes [TP(iPr)]BeR with R = Ph, nBu, Cp, Cp* revealed transmetalation of [CH2P(iPr)2]- groups from boron onto beryllium. This reaction is caused by partial dissociation of the scorpionate, which can be triggered through steric overcrowding of the beryllium atom or reducing the ligand beryllium bond strength through oxidation of the phosphorus atoms with selenium. Oxidation with oxygen or sulfur results in the formation of stable phosphine oxide and sulfide scorpionates.
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Affiliation(s)
| | - Mark H. Lochte
- Fachbereich ChemiePhilipps‐Universität Marburg35043MarburgGermany
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252
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Pérez-Gutiérrez S, Campos-Xolalpa N, Estrada-Barajas SA, Carrasco-Carballo A, Mendoza A, Sánchez-Mendoza E. Anti-Inflammatory Activity of Two Labdane Enantiomers from Gymnosperma glutinosum: An In Vivo, In Vitro, and In Silico Study. Pharmaceuticals (Basel) 2025; 18:516. [PMID: 40283952 PMCID: PMC12030748 DOI: 10.3390/ph18040516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2025] [Revised: 03/27/2025] [Accepted: 03/29/2025] [Indexed: 04/29/2025] Open
Abstract
Background/Objectives: Diseases associated with inflammatory processes continue to grow steadily throughout the world. Unfortunately, prolonged use of drugs induces adverse effects ranging from hypersensitivity reactions to damage to the digestive system. These negative effects open the possibility of continuing the search for anti-inflammatory compounds with less toxicity. The aim of this research was to isolate and evaluate the anti-inflammatory activity of a mixture of two enantiomeric labdanes isolated from Gymnosperma glutinosum by in vivo, in vitro, and in silico methods. Methods: A brief description of the main methods or treatments applied. This can include any relevant preregistration or specimen information. The structure of the labdanes enantiomers was elucidated by X-ray crystallography and spectroscopies methods. The anti-inflammatory effect was evaluated on a mouse model of ear edema induced with 12-O-tetradecanoyl phorbol-13-acetate; the pro-inflammatory mediators, nitric oxide (NO) and interleukin (IL-6), were quantified on macrophages stimulated with lipopolysaccharide, and the interaction between labdanes and diana was studied by molecular docking. Results: We identified the chemical structures of two new labdane enantiomers: a-gymglu acid and b-ent-gymglu acid. The enantiomer mixture, named gymglu acid, diminished ear edema at doses of 1 and 2 mg/ear by 36.07% and 41.99%, respectively. A concentration of 155.16 µM of gymglu acid inhibited the production of NO by 78.06% and IL-6 by 71.04%. The in silico results suggest two routes by which these labdanes reduce inflammation: partial agonism toward the corticosteroid receptors and inhibition of nitric oxide synthases. Conclusions: These results show that the gymglu acid enantiomers have promising anti-inflammatory activity.
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Affiliation(s)
- Salud Pérez-Gutiérrez
- Departamento de Sistemas Biológicos, Universidad Autónoma Metropolitana-Xochimilco, Calzada del Hueso 1100, Coyoacán, Ciudad de México 04960, Mexico; (S.P.-G.); (S.A.E.-B.)
| | - Nimsi Campos-Xolalpa
- Secretaria de Ciencia, Humanidades, Tecnología e Innovación (SECIHTI), Departamento de Sistemas Biológicos, Universidad Autónoma Metropolitana-Xochimilco, Calzada del Hueso 1100, Coyoacán, Ciudad de México 04960, Mexico;
| | - Sofía A. Estrada-Barajas
- Departamento de Sistemas Biológicos, Universidad Autónoma Metropolitana-Xochimilco, Calzada del Hueso 1100, Coyoacán, Ciudad de México 04960, Mexico; (S.P.-G.); (S.A.E.-B.)
| | - Alan Carrasco-Carballo
- Secretaria de Ciencia, Humanidades, Tecnología e Innovación (SECIHTI), Laboratorio de Elucidación y Síntesis en Química Orgánica, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Blvd. Capitán Carlos Camacho Espíritu, Puebla 72540, Mexico;
| | - Angel Mendoza
- Centro de Química, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, 18 Sur y Av. San Claudio, Col. San Manuel, Puebla 72570, Mexico;
| | - Ernesto Sánchez-Mendoza
- Departamento de Sistemas Biológicos, Universidad Autónoma Metropolitana-Xochimilco, Calzada del Hueso 1100, Coyoacán, Ciudad de México 04960, Mexico; (S.P.-G.); (S.A.E.-B.)
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253
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Dai Y, Liu Y, Mihalkovic M, Wen B, Zhang L, Fan C. CaCu 1.424Fe 0.576Si 2. IUCRDATA 2025; 10:x250325. [PMID: 40337311 PMCID: PMC12054748 DOI: 10.1107/s2414314625003256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2025] [Accepted: 04/10/2025] [Indexed: 05/09/2025] Open
Abstract
A CaCu1.424Fe0.576Si2 phase was obtained during high-pressure sinter-ing of an Si-rich quasicrystal composition prealloy with the nominal chemical com-position Si61Cu30Ca7Fe2. The obtained phase crystallizes in the space group I4/mmm (No. 139), with a = b = 4.041 Å and c = 10.010 Å. It is isotypic with CaCu2Si2 (a = b = 4.06 Å and c = 9.91 Å) [Palenzona et al. (1986 ▸). J. Less-Common Met. 119, 199-209] and CaFe2Si2 (a = b = 3.94 Å and c = 10.19 Å) [Hlukhyy et al. (2012 ▸). Z. Anorg. Allg. Chem. 638, 1619-1619]. It features a co-occupancy of Cu and Fe atoms with a ratio of the refined site-occupancy factors of 0.71 (15):0.29 (15).
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Affiliation(s)
- Yangkun Dai
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Yibo Liu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Marek Mihalkovic
- Institute of Physics, Slovak Academy of Sciences, 84511 Bratislava, Slovakia
| | - Bin Wen
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Lifeng Zhang
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
- School of Mechanical and Materials Engineering North China University of Technology,Beijing 100144 People’s Republic of China
| | - Changzeng Fan
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
- Hebei Key Lab for Optimizing Metal Product Technology and Performance Yanshan University,Qinhuangdao 066004 People’s Republic of China
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254
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Islam I, Kanti Roy P, Zangrando E, Gopal Karmaker P, Nath Roy H. 4,4-Dimethyl-2-phenyl-4,5-di-hydro-pyrrolo-[2,3,4- kl]acridin-1(2 H)-one. IUCRDATA 2025; 10:x250361. [PMID: 40337315 PMCID: PMC12054750 DOI: 10.1107/s241431462500361x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2025] [Accepted: 04/22/2025] [Indexed: 05/09/2025] Open
Abstract
In the title compound, C22H18N2O, the pendant phenyl ring is twisted by 43.85 (1)° with respect to the acridine moiety, which has almost coplanar atoms apart from the sp 3 carbon atoms. The extended structure features aromatic π-π stacking with a centroid-to-centroid distance of 3.489 (2) Å and weak C-H⋯O hydrogen bonds.
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Affiliation(s)
- Izarul Islam
- Department of Chemistry, University of Rajshahi, Rajshahi-6205, Bangladesh
| | - Pijush Kanti Roy
- Department of Chemistry, Faculty of Science, Mawlana Bhashani Science and Technology University, Tangail-1902, Bangladesh
| | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences, University of Trieste, Italy
| | - Pran Gopal Karmaker
- Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province College of Chemistry and Chemical Engineering China West Normal University,Nanchong 637002 People’s Republic of China
| | - Harendra Nath Roy
- Department of Chemistry, University of Rajshahi, Rajshahi-6205, Bangladesh
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255
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Jurisinec A, Zhang Y, Aldrich-Wright JR. (5,6-Dimethyl-1,10-phenanthroline)(2-{[2-(di-phenyl-phosphan-yl)benzyl-idene]amino}-ethan-1-amine)-platinum(II) dinitrate methanol disolvate. Acta Crystallogr E Crystallogr Commun 2025; 81:275-278. [PMID: 40201005 PMCID: PMC11974327 DOI: 10.1107/s2056989025001847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Accepted: 02/26/2025] [Indexed: 04/10/2025]
Abstract
The title compound, [Pt(C14H12N2)(C21H21N2P)](NO3)2·2CH3OH, is a platinum(II) complex, which crystallizes in a monoclinic (P21/c) space group. The complex exhibits a distorted square-planar geometry, which includes a monodentate 5,6-dimethyl-1,10-phenanthroline ligand and a tridentate 2-{[2-(di-phenyl-phosphan-yl)benzyl-idene]amino}-ethan-1-amine ligand. The structure reveals both intra- and inter-molecular π-stacking inter-actions between the phenanthroline and phosphine rings. Hydrogen bonding is observed between the complex ion, nitrate counter-ions and solvent mol-ecules.
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Affiliation(s)
- Ashley Jurisinec
- School of Science, Western Sydney University, Locked Bag 1797, Penrith South DC, Sydney, NSW 2751, Australia
| | - Yingjie Zhang
- Australian Nuclear Science and Technology Organisation, Kirrawee DC, New South Wales, Australia
| | - Janice R. Aldrich-Wright
- School of Science, Western Sydney University, Locked Bag 1797, Penrith South DC, Sydney, NSW 2751, Australia
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256
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Biehler E, Pagola S, Stam D, Merkelbach J, Jandl C, Abdel-Fattah TM. A comparison of microcrystal electron diffraction and X-ray powder diffraction for the structural analysis of metal-organic frameworks. J Appl Crystallogr 2025; 58:398-411. [PMID: 40170975 PMCID: PMC11957409 DOI: 10.1107/s1600576724012068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 12/11/2024] [Indexed: 04/03/2025] Open
Abstract
This study successfully implemented microcrystal electron diffraction (microED) and X-ray powder diffraction (XRPD) for the crystal structure determination of a new phase, TAF-CNU-1, Ni(C8H4O4)·3H2O, solved by microED from single microcrystals in the powder and refined at the kinematic and dynamic electron diffraction theory levels. This nickel metal-organic framework (MOF), together with its cobalt and manganese analogues with formula M(C8H4O4)·2H2O with M = MnII or CoII, were synthesized in aqueous media as one-pot preparations from the corresponding hydrated metal chlorides and sodium terephthalate, as a promising 'green' synthetic route to moisture-stable MOFs. The crystal structures of the two latter materials have been previously determined ab initio from X-ray powder diffraction. The advantages and disadvantages of both structural characterization techniques are briefly summarized. Additional solid-state property characterization was carried out using thermogravimetric analysis, scanning electron microscopy and Fourier transform infrared spectroscopy.
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Affiliation(s)
- Erik Biehler
- Applied Research Center, Thomas Jefferson National Accelerator Facility, Department of Molecular Biology and ChemistryChristopher Newport UniversityNewport NewsVA23606USA
| | - Silvina Pagola
- Department of Chemistry and BiochemistryOld Dominion University4501 Elkhorn AvenueNorfolkVA23529USA
| | - Daniel Stam
- ELDICO Scientific AG, 5234Villigen, Switzerland
| | | | | | - Tarek M. Abdel-Fattah
- Applied Research Center, Thomas Jefferson National Accelerator Facility, Department of Molecular Biology and ChemistryChristopher Newport UniversityNewport NewsVA23606USA
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257
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Sugiyama H, Arita A, Sekine A, Uekusa H. Triple-chromic (photo-, thermo-, and mechano-chromic) metal complexes containing N-salicylideneaminopyridine ligands. Dalton Trans 2025; 54:5668-5674. [PMID: 39932227 DOI: 10.1039/d4dt01755b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
N-Salicylideneaminopyridine (SAP) is a well-known organic chromic compound that shows a reversible colour change upon UV light irradiation (photochromism) and upon cooling (thermochromism). Herein, we report novel multi-chromic metal complexes containing SAP derivatives as ligands, viz. [Ni(NCS)2(3,5-t-Bu-SAP)4] (Ni1) and [Co(NCS)2(3,5-t-Bu-SAP)4] (Co1). The Ni1 crystals exhibited both photo- and thermochromism with new colour variations, which were due to the light absorption of the Ni(II) ions and chromic properties of the SAP ligands. The Co1 crystal also exhibited photo- and thermochromism originating from the SAP ligands. Furthermore, the Co1 crystal exhibited mechanochromism induced by grinding with a mortar, which was considered to be attributable to the change of the Co1 coordination structure. Such a triple-chromic material is rare and very fascinating for the applications of multiple sensors, memory devices, and functional inks.
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Affiliation(s)
- Haruki Sugiyama
- Department of Chemistry, School of Science, Institute of Science Tokyo, 2-12-1, Ookayama, Meguro, Tokyo, 152-8551, Japan.
- Neutron Industrial Application Promotion Center, Comprehensive Research Organization for Science and Society, Tokai, Ibaraki, 319-1106, Japan
| | - Atsuko Arita
- Department of Chemistry, School of Science, Institute of Science Tokyo, 2-12-1, Ookayama, Meguro, Tokyo, 152-8551, Japan.
| | - Akiko Sekine
- Department of Chemistry, School of Science, Institute of Science Tokyo, 2-12-1, Ookayama, Meguro, Tokyo, 152-8551, Japan.
| | - Hidehiro Uekusa
- Department of Chemistry, School of Science, Institute of Science Tokyo, 2-12-1, Ookayama, Meguro, Tokyo, 152-8551, Japan.
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258
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Adardour M, Mustafa AHM, Oubahmane M, Lahcen MA, Seif EM, Ezzat MAF, Zaballos-García E, Mague JT, Hdoufane I, Cherqaoui D, Krämer OH, Sippl W, Ibrahim HS, Baouid A. Design, synthesis and molecular modeling of new Pyrazolyl-Benzimidazolone hybrids targeting breast Cancer. Bioorg Chem 2025; 157:108269. [PMID: 39978148 DOI: 10.1016/j.bioorg.2025.108269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 02/05/2025] [Accepted: 02/10/2025] [Indexed: 02/22/2025]
Abstract
Methyl-piperidino-pyrazole (MPP) is a pyrazole derivative acting as a lead estrogen receptor (ER) antagonist and has an anti-breast cancer effect. Since some benzimidazole derivatives were reported for their inhibitory activity against breast cancer, hybrids from these reported compounds (5a-c, 6a-c, 7a-c and 8a-c) were designed to develop anti-breast cancer agents. The synthesis involved 1,3-dipolar cycloaddition of nitrilimines on the benzimidazolone derivatives 2a-b and 3a-b which occurred with chemo- and regioselectivity depending on the dipole and was confirmed by an X-ray structure of 6b. In vitro biological testing of the newly prepared compounds against the 60-cell line panel showed that 5a-c and 6a-c with a partially unsaturated pyrazole ring possessed a high GI% in the T-47D breast cancer cell line with a selectivity margin against different cell lines. Five compounds were selected for apoptotic studies in T-47D cells, of which 6a arrested cells in G1 phase and caused more apoptosis than MPP. The MTT assay revealed that compound 6a has an IC50 = 6.77 ± 0.03 μM against T-47D cells. Furthermore, 6a reduced the estrogen receptor 1 gene expression levels 3-fold in T-47D cells. Molecular dynamics simulations indicated that the complex of the active compound 6a remained stable over the last 150 ns. An analysis of the binding mode revealed that compound 6a exhibited a similar conformation compared to MPP and the co-ligand in the active site of via a specific pose involving noncovalent interactions.
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Affiliation(s)
- Mohamed Adardour
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco
| | - Al-Hassan M Mustafa
- Department of Toxicology, University Medical Center, 55131 Mainz, Germany; Department of Zoology, Faculty of Science, Aswan University, Aswan 81528, Egypt
| | - Mehdi Oubahmane
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco
| | - Marouane Ait Lahcen
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco
| | - Emad M Seif
- Pharmaceutical Chemistry Department, Faculty of Pharmacy, October University for Modern Sciences and Arts (MSA), Giza, Egypt
| | - Manal Abdel Fattah Ezzat
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Cairo University, Kasr El-Aini Street, 11562 Cairo, Egypt
| | - Elena Zaballos-García
- Departamento de Quimica Organica, Facultad de Farmacia, Universidad de Valencia, Ave. Vte. Andres Estelles s/n46100, Valencia, Spain
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA
| | - Ismail Hdoufane
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco.
| | - Driss Cherqaoui
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco
| | - Oliver H Krämer
- Department of Toxicology, University Medical Center, 55131 Mainz, Germany
| | - Wolfgang Sippl
- Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther-University of Halle-Wittenberg, 06120 Halle (Saale), Germany
| | - Hany S Ibrahim
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Egyptian Russian University, Badr City, Cairo 11829, Egypt; Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther-University of Halle-Wittenberg, 06120 Halle (Saale), Germany.
| | - Abdesselam Baouid
- Laboratory of Molecular Chemistry, Department of Chemistry, Faculty of Sciences Semlalia, University of Cadi Ayyad, BP. 2390, 40001 Marrakech, Morocco
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259
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Sztula A, Antal P, Nemec I, Kubala M, Herchel R. A novel type of heteroleptic Cu(I) complexes featuring nitrogen-rich tetrazine ligands: syntheses, crystal structures, spectral properties, cyclic voltammetry, and theoretical calculations. Dalton Trans 2025; 54:5944-5952. [PMID: 40095915 DOI: 10.1039/d4dt03137g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
Heteroleptic copper(I) complexes with the general formula [Cu(N^N)(P^P)]X constitute one of the most studied categories of 3d metal photosensitizers. Here, we examine using 1,2,4,5-tetrazine-based ligands to synthesize photoactive Cu(I) complexes. The newly prepared complexes were characterized by single-crystal X-ray analysis, which revealed the formation of dinuclear complexes [Cu2(μ-L1)(xantphos)2](ClO4)2 (1) and [Cu2(μ-L2)(xantphos)2](ClO4)2 (2), and mononuclear complexes [Cu(L3)(xantphos)]ClO4 (3) and [Cu(L4)(xantphos)]ClO4 (4), where L1 = 3,6-di(2'-pyridyl)-1,2,4,5-tetrazine (bptz), L2 = 3,6-bis-(3,5-dimethyl-pyrazol-1-yl)-1,2,4,5-tetrazine, L3 = 3-(2-pyridyl)-1,2,4,5-tetrazine, L4 = 3-(3,5-dimethyl-1H-pyrazol-1-yl)-1,2,4,5-tetrazine and xantphos = 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene. Solution stability assays were addressed by NMR spectroscopy showing that complexes are stable in dichloromethane over several days. The electronic excited states were investigated by UV-Vis and luminiscence spectroscopy and interpreted with the help of TD-DFT calculations. In the case of all the newly prepared complexes 1-4, the absorptions in the visible region were assigned to non-emissive MLCT transitions between the Cu(I) and the respective tetrazine ligand. Redox properties were probed by cyclic voltammetry and also supplemented by DFT calculations. Interestingly, tetrazine ligands L1-L4 show a shift of reduction potential to less negative values upon the formation of Cu(I) complexes 1-4. Moreover, the two complexes 3-4 represent the first reported case of mononuclear heteroleptic Cu(I)-tetrazine complexes.
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Affiliation(s)
- Adam Sztula
- Department of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic.
| | - Peter Antal
- Department of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic.
| | - Ivan Nemec
- Department of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic.
| | - Martin Kubala
- Department of Experimental Physics, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Radovan Herchel
- Department of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic.
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260
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Metwally NH, Elgemeie GH, Abd Al-latif ESSM, Jones PG. Crystal structure of 1-amino-3-(4-chloro-phen-yl)-2-cyano-3 H-benzo[4,5]thia-zolo[3,2- a]pyridine-4-carboxamide. Acta Crystallogr E Crystallogr Commun 2025; 81:279-283. [PMID: 40200996 PMCID: PMC11974324 DOI: 10.1107/s2056989025001562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Accepted: 02/20/2025] [Indexed: 04/10/2025]
Abstract
In the structure of the title compound, C19H13ClN4OS, the four atoms of the pyridinic ring that are not fused with the thia-zole, including the sp 3 C atom, lie significantly outside the benzo-thia-zole plane. A short intra-molecular S⋯O contact of 2.5992 (4) Å is observed. The amide NH2 group is planar, whereas the amine NH2 group is pyramidalized. The three-dimensional packing involves two inter-connected layer structures. The first, parallel to the bc plane, involves three classical hydrogen bonds N-Hamine⋯O (one of two), N-Hamine⋯Cl and one N-Hamide ⋯Ncyano; the second, parallel to the ab plane, involves two hydrogen bonds, N-Hamide⋯O and the second N-Hamine⋯O, together with the short and linear contact Ncyano⋯Cl-C, which may be regarded as a halogen bond.
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Affiliation(s)
- Nadia H. Metwally
- Chemistry Department, Faculty of Science, Cairo University, Giza, Egypt
| | - Galal H. Elgemeie
- Chemistry Department, Faculty of Science, Helwan University, Cairo, Egypt
| | | | - Peter G. Jones
- Institut für Anorganische und Analytische Chemie, Technische Universität Braunschweig, Hagenring 30, D-38106 Braunschweig, Germany
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261
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Kawasaki T, Hori A. Polymorphism and Hirshfeld surface analysis of tetra-oxa[2]perfluoro-arene[2]triazine. Acta Crystallogr E Crystallogr Commun 2025; 81:289-295. [PMID: 40201009 PMCID: PMC11974337 DOI: 10.1107/s205698902500194x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Accepted: 02/28/2025] [Indexed: 04/10/2025]
Abstract
The title compound, tetra-oxa[2]perfluoro-arene[2]triazine (C20H6F8N6O6), composed of two tetra-fluoro-phenyl-ene and two triazine moieties connected by four oxygen atoms, was crystallized via slow evaporation of a di-chloro-methane solution, yielding two polymorphs: block- (I) and plate-shaped (II) crystals. Polymorph I (triclinic, P1, V = 516 Å3 at 173 K) was previously reported by Yang et al. [(2015. Org. Lett. 15, 4414-4417] whereas the newly identified polymorph II (triclinic, P1, V = 1085 Å3 at 100 K) shares the same space group but has a unit-cell volume twice as large, accommodating two symmetrically distinct mol-ecules, Mol-ecule-1 and Mol-ecule-2, with a different mol-ecular arrangement. Since these crystals are expected to exhibit the characteristics of non-porous adaptive crystals, detailed analyses of inter-molecular inter-actions were conducted, revealing that C-F⋯π-hole inter-actions are more pronounced in II than in I. Hirshfeld surface analysis at 100 K revealed that the primary contributions to the crystal packing in polymorph I were F⋯F (17.1%), F⋯H/H⋯F (21.5%), C⋯H/H⋯C (6.3%), C⋯F/F⋯C (4.5%) and C⋯O/O⋯C (9.2%) inter-actions, whereas in polymorph II, these inter-actions were F⋯F (9.9% and 10.0%), F⋯H/H⋯F (20.9% and 26.5%), C⋯H/H⋯C (6.3% and 2.9%), C⋯F/F⋯C (8.5% and 10.0%) and C⋯O/O⋯C (4.9% and 4.6%) for Mol-ecule-1 and Mol-ecule-2, respectively. Powder X-ray diffraction analysis indicates that polymorph I is the more stable crystalline form, predominantly obtained through rapid precipitation or by grinding the crystals.
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Affiliation(s)
- Tadashi Kawasaki
- Department of Applied Chemistry, Graduate School of Engineering & Science, 307 Fukasaku, Minuma-ku, Saitama-shi, Saitama 337-8570, Japan
| | - Akiko Hori
- Department of Applied Chemistry, Graduate School of Engineering & Science, 307 Fukasaku, Minuma-ku, Saitama-shi, Saitama 337-8570, Japan
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Pranathi AN, Nagineni D, Bollikanda RK, Belyaevskaya SV, Esaulkova IL, Zarubaev VV, Sridhar B, Murahari M, Kantevari S. Diaryl Diimidazopyrimidine Derivatives as Potent Inhibitors of Influenza A Virus: Synthesis, Evaluation and Docking Studies. Drug Dev Res 2025; 86:e70088. [PMID: 40226986 DOI: 10.1002/ddr.70088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 02/28/2025] [Accepted: 04/01/2025] [Indexed: 04/15/2025]
Abstract
In this report, we present a new series of diaryl diimidazopyrimidine derivatives 3a-m, that have been synthesized and assessed for their in vitro antiviral activity. The derivatives were prepared through a one-step reaction involving commercially available 2,4-diamino-6-chloropyrimidine and various phenacyl bromides 2a-m, leading to the formation of the desired diaryl diimidazo- pyrimidines 3a-m with good yields. In vitro evaluations against the Influenza A H1N1 strain identified compounds 3m (SI = 73) and 3b (SI = 23) as the most potent candidates. Additionally, antimicrobial screening indicated that compounds 3d and 3j, which contain methyl and methoxy substitutions, exhibited moderate activity against Streptococcus mutans, Salmonella typhi, and Candida albicans. Molecular Docking studies of the promising compounds 3b and 3m demonstrated significant binding interactions with the M1 matrix protein (PDB ID: 5CQE) in comparison to M2 proton channel of Influenza A (PDB: 6US9), suggesting that these derivatives may be effectively targeting the M1 protein. Additionally, molecular dynamics (MD) simulations were conducted to evaluate the stability, dynamic behaviour, and binding affinity of the most potent compounds 3b and 3m. The in vitro antiviral studies, molecular docking and MD simulations data highlight the promising pharmacological potential of these analogues, paving the way for further structural optimization and development as potential antiviral agents.
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Affiliation(s)
- Abburi Naga Pranathi
- Fluoro & Agrochemicals Division, CSIR- Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
| | - Devendra Nagineni
- Fluoro & Agrochemicals Division, CSIR- Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
| | - Rakesh Kumar Bollikanda
- Fluoro & Agrochemicals Division, CSIR- Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
| | - Svetlana V Belyaevskaya
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str., St. Petersburg, 197101, Russia
| | - Iana L Esaulkova
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str., St. Petersburg, 197101, Russia
| | - Vladimir V Zarubaev
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str., St. Petersburg, 197101, Russia
| | - Balasubramanian Sridhar
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
- Centre for X-ray Crystallography, CSIR-Indian Institute of Chemical Technology, Hyderabad, 500007, India
| | - Manikanta Murahari
- College of Pharmacy, Koneru Lakshmaiah Education Foundation, Vaddeswaram, Andhra Pradesh, India
| | - Srinivas Kantevari
- Fluoro & Agrochemicals Division, CSIR- Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
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263
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Asprilla-Herrera LM, Techert S, Velazquez-Garcia JDJ. Synthesis and structure of tris-(2-methyl-1 H-imidazol-3-ium) 5-carb-oxy-benzene-1,3-di-carboxyl-ate 3,5-di-carb-oxy-benzoate. Acta Crystallogr E Crystallogr Commun 2025; 81:303-309. [PMID: 40201002 PMCID: PMC11974331 DOI: 10.1107/s2056989025002063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Accepted: 03/04/2025] [Indexed: 04/10/2025]
Abstract
The structure of the title salt, 3C4H7N2 +·C9H5O6 -·C9H4O6 2-, 1, consists of three 2-methyl-imidazolium cations and both a single and a doubly deprotonated form of trimesic acid as anions. A detailed analysis of the bond lengths and angles reveals both differences and similarities between compound 1 and the previously reported 2-methyl-1H-imidazol-3-ium 3,5-di-carb-oxy-benzoate structure [Baletska et al. (2023). Acta Cryst. E79, 1088-109], as well as the neutral counterpart of the ions. Examination of the crystal packing shows the formation of infinite chains by the anions, which, along with the cations, form zigzag planes parallel to the ab plane. The packing inter-actions are primarily driven by π-π inter-actions and hydrogen bonding between anions.
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Affiliation(s)
- Lina Maria Asprilla-Herrera
- Department of Chemistry, Faculty of Natural and Exact Sciences, Universidad del, Valle, Calle 13 No. 100-00, 760042 Cali, Colombia
| | - Simone Techert
- Institut für Röntgenphysik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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264
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Sonneck M, Spannenberg A, Wohlrab S, Peppel T. 3-Chloro-propio-phenone. IUCRDATA 2025; 10:x250349. [PMID: 40337313 PMCID: PMC12054749 DOI: 10.1107/s2414314625003499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2025] [Accepted: 04/17/2025] [Indexed: 05/09/2025] Open
Abstract
The title compound, 3-chloro-propio-phenone (or 3-chloro-1-phenyl-propan-1-one), C9H9ClO, consists of an almost planar mol-ecule that is charaterized by very small torsion angles within the alkyl side chain (torsion angles < 6.3°). No hydrogen bonds are observed in the crystal packing. The compound exhibits a melting point of 54°C.
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Affiliation(s)
- Marcel Sonneck
- Leibniz-Institut für Katalyse e V Albert-Einstein-Str 29a 18059 RostockGermany
| | - Anke Spannenberg
- Leibniz-Institut für Katalyse e V Albert-Einstein-Str 29a 18059 RostockGermany
| | - Sebastian Wohlrab
- Leibniz-Institut für Katalyse e V Albert-Einstein-Str 29a 18059 RostockGermany
| | - Tim Peppel
- Leibniz-Institut für Katalyse e V Albert-Einstein-Str 29a 18059 RostockGermany
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265
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Molčanov L, Krawczuk A, Pavić L, Jurić M, Androš Dubraja L, Molčanov K. Charge transfer between a metal-bound halide and a quinone through π-hole interactions leads to bulk conductivity. Dalton Trans 2025; 54:5796-5804. [PMID: 40067050 DOI: 10.1039/d4dt02961e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
π-Hole interactions between a metal-bound halide and a quinoid ring are described in four novel isostructural co-crystals with the formula [Cu(terpy)ClX]·X'4Q (terpy = 2,2':6',2''-terpyridine; Q = quinone; X = Br, I; X' = Cl, Br). An unusually strong π-hole interaction between Cu-X and the quinoid ring is noted. Periodic DFT computations estimate the energy of the X⋯quinone interaction to be -20.79 kcal mol-1, indicating a very strong non-covalent interaction attributed to a higher degree of polarization along the bonding path. The black colour of the crystals originates from a cooperative intermolecular charge transfer between the [Cu(terpy)ClX] complex and the quinone π-system, with iodine playing a dominant role in this process by facilitating the π-hole interaction that enhances the charge transfer mechanism. All the compounds are considered to be weak semiconductors with the σDC magnitude ranging between 10-11 and 10-9 S cm-1. It is anticipated that by a smart choice of electron donors and electron acceptors, one can substantially enhance the effect and engineer more efficient conductive materials.
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Affiliation(s)
- Lidija Molčanov
- Rudjer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia.
| | - Anna Krawczuk
- Institut für Anorganische Chemie, University of Göttingen, Tammanstraβe 4, D-37077 Göttingen, Germany.
| | - Luka Pavić
- Rudjer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia.
| | - Marijana Jurić
- Rudjer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia.
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266
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Artis R, Heyward E, Reyes N, Van Ostenbridge K, Lynch WE, Padgett CW. Syntheses and crystal structures of three tri-phenyl-sulfonium halometallate salts of zinc, cadmium and mercury. Acta Crystallogr E Crystallogr Commun 2025; 81:358-363. [PMID: 40201007 PMCID: PMC11974339 DOI: 10.1107/s2056989025002245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2025] [Accepted: 03/12/2025] [Indexed: 04/10/2025]
Abstract
Bis(tri-phenyl-sulfonium) tetra-chlorido-zinc(II), (C18H15S)2[ZnCl4] (I), bis-(tri-phenyl-sulfonium) tetra-chlorido-cadmium(II), (C18H15S)2[CdCl4] (II), and bis-(tri-phenyl-sulfonium) tetra-chlorido-mercury(II) methanol monosolvate, (C18H15S)2[HgCl4]·CH3OH (III), each crystallize in the monoclinic space group P21/n. In all three structures, there are two crystallographically independent tri-phenyl-sulfonium (TPS) cations per asymmetric unit, each adopting a distorted trigonal-pyramidal geometry about the S atom (S-C bond lengths in the 1.77-1.80 Å range and C-S-C angles of 100-107°). The [MCl4]2- anions (M = Zn2+, Cd2+, Hg2+) are tetra-hedral; their M-Cl bond lengths systematically increase from Zn2+ to Hg2+, consistent with the larger ionic radius of the heavier metal. Hirshfeld surface analyses show that H⋯H and H⋯C contacts dominate the TPS cation environments, whereas H⋯Cl and S⋯M inter-actions anchor each [MCl4]2- anion to two surrounding TPS cations. Weak C-H⋯Cl hydrogen bonds, as well as inversion-centered π-π stacking, generate layers in (I) and (II) and dimeric [(TPS)2-HgCl4]2 assemblies in (III).
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Affiliation(s)
- Rylan Artis
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
| | - Elizabeth Heyward
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
| | - Naomi Reyes
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
| | - Kaitlyn Van Ostenbridge
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
| | - Will E. Lynch
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
| | - Clifford W. Padgett
- Department of Biochemistry Chemistry and Physics Georgia Southern University, Armstrong Campus 11935 Abercorn Street Savannah GA 31419 USA
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267
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Ramoba L, Nzondomyo WJ, Serala K, Macharia LW, Biswas S, Prince S, Malan FP, Alexander OT, Manicum ALE. Derivatives of Pyrazole-Based Compounds as Prospective Cancer Agents. ACS OMEGA 2025; 10:12671-12678. [PMID: 40191378 PMCID: PMC11966572 DOI: 10.1021/acsomega.5c00320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Revised: 02/19/2025] [Accepted: 02/24/2025] [Indexed: 04/09/2025]
Abstract
Five pyrazole-based compounds, 3,5-dimethyl-1H-pyrazole, L1; 3,5-diphenyl-1H-pyrazole, L2; 3-(trifluoromethyl)-5-phenyl-1H-pyrazole, L3; 3-(trifluoromethyl)-5-methyl-1H-pyrazole, L4; and 3,5-ditert-butyl-1H-pyrazole, L5 were synthesized from a typical condensation reaction of β-diketone derivatives with hydrazine hydrate reagent and characterized using various spectroscopic techniques such as FT-IR, UV-vis, 1H and 13C NMR, and LC-MS spectroscopy. L1 was further analyzed by single-crystal X-ray diffraction, and the N1-N1' bond distance was found to be 1.361(3) Å and correlated well with other pyrazole-based compounds. The short-term cytotoxicity of 10 μM pyrazole compounds (L1-L5) was evaluated against pancreatic (CFPAC-1 and PANC-1), breast (MDA-MB-231 and MCF-7), and cervical (CaSki and HeLa) cancer cell lines using the MTT cell viability assay. Cisplatin and gemcitabine were included as positive control drugs followed by the determination of the half-maximal effective concentrations of prospective compounds. L2 and L3, respectively, displayed moderate cytotoxicity against CFPAC-1 (61.7 ± 4.9 μM) and MCF-7 (81.48 ± 0.89 μM) cell lines.
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Affiliation(s)
- Lesetja
V. Ramoba
- Department
of Chemistry, Tshwane University of Technology, P.O. Box X680, Pretoria 0001, South Africa
| | - Wakopo J. Nzondomyo
- Department
of Chemistry, Tshwane University of Technology, P.O. Box X680, Pretoria 0001, South Africa
| | - Karabo Serala
- Department
of Human Biology, University of Cape Town, Anzio Road Observatory, Cape Town 7925, South Africa
| | - Lucy W. Macharia
- Department
of Human Biology, University of Cape Town, Anzio Road Observatory, Cape Town 7925, South Africa
| | - Supratim Biswas
- Department
of Human Biology, University of Cape Town, Anzio Road Observatory, Cape Town 7925, South Africa
| | - Sharon Prince
- Department
of Human Biology, University of Cape Town, Anzio Road Observatory, Cape Town 7925, South Africa
| | - Frederick P. Malan
- Department
of Chemistry, University of Pretoria, 02 Lynnwood Road, Hatfield, Pretoria 0001, South Africa
| | - Orbett T. Alexander
- Department
of Chemistry, University of the Western
Cape, Bellville, Cape Town 7535, South Africa
| | - Amanda-Lee E. Manicum
- Department
of Chemistry, Tshwane University of Technology, P.O. Box X680, Pretoria 0001, South Africa
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268
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Thoonen S, Walker SE, Marshall DL, Fulloon TM, Brandon S, McKay AI, Paterson MJ, Mullen KM, Crowley JD, Tuck KL, Turner DR. Single-Step Synthesis of a Heterometallic [Cu 2PdL 4] 2+ Hybrid Metal-Organic Coordination Cage. Angew Chem Int Ed Engl 2025:e202506064. [PMID: 40167504 DOI: 10.1002/anie.202506064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2025] [Revised: 03/26/2025] [Accepted: 03/31/2025] [Indexed: 04/02/2025]
Abstract
Traditional methods of assembling low-symmetry heterometallic cage architectures are limited to stepwise construction and combinations of inert and labile metal ions, affording complex, anisotropic cage structures by sacrificing synthetic ease. Herein, a heterometallic [Cu2PdL4]2+ lantern-type cage has been assembled in a single self-assembly step through the use of a heteroditopic ligand with two different metal-binding groups. The resultant cage complex is a fusion of two common lantern-type cage motifs-carboxylate-based metal-organic Cu4L4 cages and pyridyl-based Pd2L4 coordination cages. Evidence for heterometallic cage formation in solution was provided by 1H and diffusion-ordered NMR spectroscopy and electrospray ionization mass spectrometry (ESIMS) data, whereas circular dichroism (CD) spectra confirmed the helical nature of the assembly. The heterometallic cage was then exploited in binding heterotopic guests. It is envisioned that the simple design strategy presented herein will ease the assembly of other structurally complex, low-symmetry cage architectures.
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Affiliation(s)
- Shannon Thoonen
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
| | - Samuel E Walker
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
| | - David L Marshall
- Centre for Materials Science (CFMS), Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
- Central Analytical Research Facility (CARF), Queensland University of Technology, 2 George Street, Brisbane, QLD 4000, Australia
| | - Therese M Fulloon
- Centre for Materials Science (CFMS), Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
- School of Chemistry and Physics, Queensland University of Technology, 2 George Street, Brisbane, QLD 4000, Australia
| | - Samuel Brandon
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
| | - Alasdair I McKay
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
| | - Martin J Paterson
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh, EH14 4AS, UK
| | - Kathleen M Mullen
- Centre for Materials Science (CFMS), Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
- School of Chemistry and Physics, Queensland University of Technology, 2 George Street, Brisbane, QLD 4000, Australia
| | - James D Crowley
- Department of Chemistry, University of Otago, PO Box 56, Dunedin, 9054, New Zealand
| | - Kellie L Tuck
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
| | - David R Turner
- School of Chemistry, Monash University, Clayton, VIC 3800, Australia
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269
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Czyżewska I, Mazur L, Biernasiuk A, Hordyjewska A, Popiołek Ł. Novel Derivatives of Nicotinic Acid: Synthesis, Crystal Structure, Antimicrobial Activity and Cytotoxicity. Chem Biodivers 2025:e202500264. [PMID: 40168098 DOI: 10.1002/cbdv.202500264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 03/25/2025] [Accepted: 03/31/2025] [Indexed: 04/03/2025]
Abstract
The overuse of antibiotics is one of the reasons which has led to the development of drug-resistant bacteria, which is a huge challenge for modern medicine. As well as the incidences of cancer, which are increasing every year, currently known cytostatics do not provide satisfactory therapeutic effects with many side effects. Bearing in mind these problems of modern medicine, we have synthesized new acylhydrazones with potential antibacterial and anticancer activities. The compounds were created as a result of condensation of commercially available nicotinic acid hydrazide with appropriate aldehydes. Additionally, some of them were obtained using mechanochemistry. The chemical structure of the obtained compounds was confirmed by spectral methods IR, 1H NMR and 13C NMR, and the crystal structure of selected compounds was determined by single-crystal X-ray diffraction analysis. Phase purity tests were performed for each compound. The tested compounds had very significant activity against Gram-positive bacteria and slightly worse activity against fungi from the genus Candida. The least antibacterial activity of obtained acylhydrazones was shown against Gram-negative bacterial strains. In addition to these, the compounds described did not have a toxic effect on normal cell lines.
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Affiliation(s)
- Izabela Czyżewska
- Chair and Department of Organic Chemistry, Faculty of Pharmacy, Medical University of Lublin, Lublin, Poland
| | - Liliana Mazur
- Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University, Lublin, Poland
| | - Anna Biernasiuk
- Chair and Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Medical University of Lublin, Lublin, Poland
| | - Anna Hordyjewska
- Chair and Department of Medicinal Chemistry, Faculty of Medical Sciences, Medical University of Lublin, Lublin, Poland
| | - Łukasz Popiołek
- Chair and Department of Organic Chemistry, Faculty of Pharmacy, Medical University of Lublin, Lublin, Poland
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270
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Pal R, Mondal U, Raksha K, Banerjee P. Isophthalate and N-Chelating Linker-Based Luminescent Cd-MOF for "Turn-On" EtOH Sensing via RGB-Assisted Smartphone Platform and "Turn-Off" Fe 3+ Monitoring in Biodiesel Specimens. Chempluschem 2025:e2500085. [PMID: 40167170 DOI: 10.1002/cplu.202500085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 03/25/2025] [Accepted: 04/01/2025] [Indexed: 04/02/2025]
Abstract
Monitoring trace solvent and metal adulteration in biodiesel is crucial for quality control and commercialization. This study explores a mesoporous Cd(II)-MOF for dual-mode fluorescence sensing: "turn-on" detection of EtOH and "turn-off" monitoring of Fe3+ in aqueous and biodiesel samples. Synthesized using N-chelating, π-conjugated 2,2'-bipyridine and μ3-η1,η1,η2 bridging 5-hydroxyisophthalic acid, the MOF exhibits high phase purity, lamellar rod morphology, and high thermal stability, attributed to its robust framework, reinforced by supramolecular H-bonding and interlayer π-π stacking interactions. The MOF's blue luminescence enables rapid detection of EtOH (6.27-fold enhancement, LOD: 6.33 ppm, 40s response time) and Fe3+ (>90% quenching, LOD: ≈1.17 μM, KSV: 1.318 × 105 M- 1, 30 s response time). The EtOH sensing ensues via restriction of photo-induced electron transfer in the MOF, aided by hydrogen bonding with MOF hydroxyls and polarity effects, while Fe3+ quenching arises from absorption competition quenching and electrostatic interactions. The sensor detects EtOH and Fe3+ in pretreated biodiesels derived from Jatropha and waste cooking oil (recovery: 78-90% and 73-75%, respectively). Further, a 4.89-fold "turn-on" for EtOH and 81% quenching for Fe3+ is evidenced when analytes are directly added into untreated Jatropha biodiesel. A smartphone-based RGB calibration further enhances real-time ethanol analysis, ensuring practical applicability.
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Affiliation(s)
- Rajeshwari Pal
- Electric Mobility and Tribology Research Group, CSIR-Central Mechanical Engineering Research Institute (CSIR-CMERI), M. G. Avenue, Durgapur, West Bengal, 713209, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Udayan Mondal
- Electric Mobility and Tribology Research Group, CSIR-Central Mechanical Engineering Research Institute (CSIR-CMERI), M. G. Avenue, Durgapur, West Bengal, 713209, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Kumari Raksha
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, West Bengal, 741246, India
| | - Priyabrata Banerjee
- Electric Mobility and Tribology Research Group, CSIR-Central Mechanical Engineering Research Institute (CSIR-CMERI), M. G. Avenue, Durgapur, West Bengal, 713209, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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271
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Ward JS, Mailman A. Solid-State Photoconversion of a Discrete Mixed Iodine(I) System to a 1D Polymer. Angew Chem Int Ed Engl 2025:e202503763. [PMID: 40167313 DOI: 10.1002/anie.202503763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Revised: 03/20/2025] [Accepted: 04/01/2025] [Indexed: 04/02/2025]
Abstract
The first example of a mixed halogen(I) complex (2), containing three distinct iodine(I) moieties ([N-I-N]+, O-I-N, and [O-I-O]-) within the same structure, was synthesized with 4-styrylpyridine (4-stypy) and 3,4,5,6-tetrafluorophthalate as the stabilizing Lewis bases. This complex was observed to be in equilibrium with its respective bis(OIN) complex (1a), with isolated samples of 2 also being found to convert to 1a in solution. Upon UV irradiation of 2, a single-crystal-to-single-crystal [2 + 2] cycloaddition reaction was observed, converting the discrete salt 2 to the 1D polymer 5. Complex 5 retained all the iodine(I) moieties from prior to photoconversion and represents the first example of nondestructive photoconversion of a halogen(I) complex. To facilitate comparisons to 2 and 5, several additional closely related iodine(I) complexes were synthesized, with the iodine(I) complexes characterized by NMR (1H, 1H-15N HMBC) and SCXRD, as well as by Raman and IR spectroscopy for 2, 5, and their close structural analogue 1a.
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Affiliation(s)
- Jas S Ward
- Department of Chemistry, University of Jyvaskyla, Jyväskylä, 40014, Finland
| | - Aaron Mailman
- Department of Chemistry, University of Jyvaskyla, Jyväskylä, 40014, Finland
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272
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Naghiyev FN, Hökelek T, Khrustalev VN, Mamedov HM, Belay AN, Ashurov J, Mamedov IG. Crystal structure and Hirshfeld surface analyses, inter-molecular inter-action energies and energy frameworks of methyl 6-amino-5-cyano-2-(2-meth-oxy-2-oxoeth-yl)-4-(4-nitro-phen-yl)-4 H-pyran-3-carboxyl-ate. Acta Crystallogr E Crystallogr Commun 2025; 81:296-302. [PMID: 40201010 PMCID: PMC11974329 DOI: 10.1107/s2056989025001276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Accepted: 02/11/2025] [Indexed: 04/10/2025]
Abstract
The title compound, C17H15N3O7, contains pyran and phenyl rings, with the pyran ring exhibiting a flattened-boat conformation. In the crystal, inter-molecular N-H⋯N hydrogen bonds link the mol-ecules into centrosymmetric dimers, forming R 2 2(12) ring motifs. These dimers are linked through N-H⋯O hydrogen bonds into a three-dimensional architecture. A Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯O/O⋯H (29.7%), H⋯H (28.7%), H⋯C/C⋯H (16.0%) and H⋯N/N⋯H (12.9%) inter-actions. In addition to van der Waals inter-actions and N-H⋯N and N-H⋯O hydrogen bonds, halogen bonds, tetrel bonds and pnictogen bonds also play an important role in the cohesion of the crystal structure.
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Affiliation(s)
- Farid N. Naghiyev
- Department of Chemistry, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Tuncer Hökelek
- Hacettepe University, Department of Physics, 06800 Beytepe-Ankara, Türkiye
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University) Miklukho-Maklay St 6 Moscow 117198 Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow 119991, Russian Federation
| | - Huseyn M. Mamedov
- Faculty of Physics, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Alebel N. Belay
- Department of Chemistry, Bahir Dar University, PO Box 79, Bahir Dar, Ethiopia
| | - Jamshid Ashurov
- Institute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, M. Ulugbek St. 83, Tashkent, 100125, Uzbekistan
| | - Ibrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov Str. 23, Az 1148 Baku, Azerbaijan
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273
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Hakimov M, Ortikov I, Sattarov T, Tashkhodjaev B, Tojiboev A. Synthesis, crystal structure and Hirshfeld surface analysis of a propyl 4-{[1-(2-methyl-4-nitro-phen-yl)-1 H-1,2,3-triazol-4-yl]meth-oxy}benzoate copper(II) chloride complex. Acta Crystallogr E Crystallogr Commun 2025; 81:271-274. [PMID: 40201008 PMCID: PMC11974326 DOI: 10.1107/s2056989025001732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Accepted: 02/24/2025] [Indexed: 04/10/2025]
Abstract
The core of the title complex, di-chlorido-bis-(propyl 4-{[1-(2-methyl-4-nitro-phen-yl)-1H-1,2,3-triazol-4-yl]meth-oxy}benzoate)copper(II), [CuCl2(C20H20N4O5)2], which belongs to the copper(II) complex family, consists of two C20H20N4O5 ligands and two chloride ligands arranged around the metal, forming a trans-di-chlorido square-planar complex. In the crystal, the mol-ecules are linked by C-H⋯Cl and C-H⋯O hydrogen bonds as well as by aromatic π-π stacking inter-actions into a three-dimensional network. To further analyse the inter-molecular inter-actions, a Hirshfeld surface analysis was performed.
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Affiliation(s)
- Muminjon Hakimov
- Namangan State University, Boburshoh str. 161, Namangan, 160107, Uzbekistan
| | - Ilkhomjon Ortikov
- Alfraganus University, Yukari Karakamysh str. 2A 100190, Tashkent, Uzbekistan
| | - Tulkinjon Sattarov
- Namangan State University, Boburshoh str. 161, Namangan, 160107, Uzbekistan
| | - Bakhodir Tashkhodjaev
- Institute of the Chemistry of Plant Substances, Uzbekistan Academy of Sciences, Mirzo Ulugbek Str. 77, Tashkent 100170, Uzbekistan
| | - Akmaljon Tojiboev
- University of Geological Sciences, Olimlar Str. 64, Tashkent 100170, Uzbekistan
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274
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Akiko A, Sakata M, Takuma K, Doi M. Fluorine-hydrogen inter-actions observed in a helix structure having an orn-free gramicidin S sequence incorporating 4- trans-fluoro-proline. Acta Crystallogr E Crystallogr Commun 2025; 81:345-349. [PMID: 40201012 PMCID: PMC11974333 DOI: 10.1107/s2056989025002592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Accepted: 03/21/2025] [Indexed: 04/10/2025]
Abstract
The deca-peptide Boc-(d-Phe-tFPro-Val-Leu-Leu)2-OMe (1) (Boc is tert-but-oxy-carbonyl, tFPro is 4-trans-fluoro-l-proline d-Phe is d-phenyl-alanine, Val is valine and Leu is leucine) crystallized in a methanol-solvated form (C68H104F2N10O13·CH4O). Peptide 1 has a sequence similar to gramicidin S (GS) incorporating tFPro. GS is a cyclic peptide, with the d-Phe-Pro unit known as a strong β-turn inducer in previous studies. Thus, it was initially assumed that 1 would bend at the d-Phe6-tFPro7 position, potentially forming a sheet-like structure. However, the structure of 1 was a helix, a surprising finding in GS-related structural studies. A factor enabling this helical formation could be the fluorine-H inter-actions between tFPro and the aromatic rings of d-Phe residues.
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Affiliation(s)
- Asano Akiko
- Osaka Medical and Pharmaceutical University, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Mizuki Sakata
- Osaka Medical and Pharmaceutical University, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Kato Takuma
- Osaka Medical and Pharmaceutical University, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Mitsunobu Doi
- Osaka Medical and Pharmaceutical University, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
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275
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Thiam EWM, Ba KM, Kane AY, Thiam IE, Claiser N, Souhassou M, Barry AH, Gaye M. Synthesis and crystal structure of dipotassium nickel polyphosphate. Acta Crystallogr E Crystallogr Commun 2025; 81:324-327. [PMID: 40201000 PMCID: PMC11974328 DOI: 10.1107/s2056989025002221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Accepted: 03/11/2025] [Indexed: 04/10/2025]
Abstract
Single crystals of K2Ni(PO3)4 were obtained by solid-state reaction. The structure consists of infinite zigzag polyphosphate chains, running along the c-axis direction, linked by Ni2+ ions and delimiting large tunnels in which the K+ ions are located. Ni2+ ions form slightly distorted NiO6 octa-hedra and the coordination numbers of the independent potassium cations are 8 and 10.
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Affiliation(s)
- El Waleda Moustapha Thiam
- Unité de Recherche en Chimie des Matériaux, Département de Chimie, Faculté des Sciences et Techniques, Université de Nouakchott, Mauritania
| | - Kalidou Mamadou Ba
- Unité de Recherche en Chimie des Matériaux, Département de Chimie, Faculté des Sciences et Techniques, Université de Nouakchott, Mauritania
| | - Aichata Yaya Kane
- Unité de Recherche en Chimie des Matériaux, Département de Chimie, Faculté des Sciences et Techniques, Université de Nouakchott, Mauritania
| | - Ibrahima Elhadji Thiam
- Département de Chimie Faculté des Sciences et Techniques Université Cheik Anta Diop Dakar Senegal
| | - Nicolas Claiser
- CNRS Laboratoire CRM2 UMR CNRS 7036 Université de Lorraine, boulevard des aiguillettes BP 70239 Vandoeuvre-lès-Nancy 54506 France
| | - Mohamed Souhassou
- CNRS Laboratoire CRM2 UMR CNRS 7036 Université de Lorraine, boulevard des aiguillettes BP 70239 Vandoeuvre-lès-Nancy 54506 France
| | - Aliou Hamady Barry
- Unité de Recherche en Chimie des Matériaux, Département de Chimie, Faculté des Sciences et Techniques, Université de Nouakchott, Mauritania
| | - Mohamed Gaye
- Département de Chimie Faculté des Sciences et Techniques Université Cheik Anta Diop Dakar Senegal
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276
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Yun-Deng W, Hui W, Yun X, Jie N, Jian L, Hui Z, Xiang-Yang X, Jun X. Crystal structure of the possible sulindac impurity 2-(5-fluoro-2-methyl-1 H-inden-3-yl)aceto-nitrile. Acta Crystallogr E Crystallogr Commun 2025; 81:341-344. [PMID: 40200998 PMCID: PMC11974336 DOI: 10.1107/s2056989025002622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2025] [Accepted: 03/22/2025] [Indexed: 04/10/2025]
Abstract
The title compound,C12H10FN, was identified as a possible critical degradation impurity of sulindac, a therapeutic COX-2 inhibitor for rheumatoid arthritis. Single-crystal X-ray analysis revealed two conformationally slightly different mol-ecules in the asymmetric unit (Z' = 2), each containing an indene ring system. In the crystal structure, [100] chains formed through C-H⋯N inter-actions are connected into a tri-periodic supra-molecular structure by further C-H⋯F and C-H⋯π inter-actions through P21/n symmetry operations.
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Affiliation(s)
- Wu Yun-Deng
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Wan Hui
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Xia Yun
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Ni Jie
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Li Jian
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Zhang Hui
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Xu Xiang-Yang
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
| | - Xie Jun
- Technique Center, Jinling Pharmaceutical Company Limited, 58 Xingang Road Qixia, district, Nanjing, Jiangsu 210046, People’s Republic of China
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277
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Bhattacherjee D, Kariuki BM, Piscelli BA, Cormanich RA, Wirth T. Synthesis and Reactivity of Six-Membered Cyclic Diaryl λ 3-Bromanes and λ 3-Chloranes. Angew Chem Int Ed Engl 2025; 64:e202424559. [PMID: 39823495 DOI: 10.1002/anie.202424559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2024] [Revised: 01/14/2025] [Accepted: 01/16/2025] [Indexed: 01/19/2025]
Abstract
Despite the remarkable advancements in hypervalent iodine chemistry, exploration of bromine and chlorine analogues remains in its infancy due to their difficult synthesis. Herein, we introduce six-membered cyclic λ3-bromanes and λ3-chloranes. Through single-crystal X-ray structural analyses and conformational studies, we delineate the crucial bonding patterns pivotal for the thermodynamic stability of these compounds. Notably, these investigations reveal pronounced π-π stacking phenomena within the crystal lattice of hypercoordinated bromine(III) and chlorine(III) species. Their reactivity profile is explored as they are radical precursors or electrophilic reagents in metal-free intermolecular biaryl couplings, O- and S-arylations, and Cu(I)-promoted intramolecular biaryl couplings which is complementary to the known reactivity of five-membered bromanes and chloranes. Mechanistic insights are provided, elucidating the pathways governing their reactivity and underscoring the potential in organic synthesis.
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Affiliation(s)
| | - Benson M Kariuki
- School of Chemistry, Cardiff University, Cardiff, CF10 3AT, Cymru/Wales, UK
| | - Bruno A Piscelli
- Instituto de Química, Universidade Estadual de Campinas, 270 Monteiro Lobato street, 13083-862, Campinas, São Paulo, Brazil
| | - Rodrigo A Cormanich
- Instituto de Química, Universidade Estadual de Campinas, 270 Monteiro Lobato street, 13083-862, Campinas, São Paulo, Brazil
| | - Thomas Wirth
- School of Chemistry, Cardiff University, Cardiff, CF10 3AT, Cymru/Wales, UK
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278
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Samuel C, Pramod V, V S S, Steiner A, Baskar V. Functionalized organotellurium macrocycles: tuning their optical bandgap and investigation of their catalytic activity. Dalton Trans 2025; 54:5747-5752. [PMID: 40094455 DOI: 10.1039/d4dt03388d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
This work deals with the synthesis, characterization, and optical properties of 12-membered tellurium macrocycles functionalized with an allyl group. These are synthesized by the reaction of bis-p-methoxyphenyl tellurium dihalide with phenyl allyl phosphinic acid at room temperature. SCXRD reveals that the cationic macrocycle is capped by two halide ions giving an overall composition of [((p-OMePh)2Te)2(O)(PhC3H5PO2)(μ4-X)]2, where X = Cl (Cl-TAM) and Br (Br-TAM). On reacting Cl-TAM with KI, we were able to isolate the iodo-capped macrocycle [((p-OMePh)2Te)2(O)(PhC3H5PO2)(μ4-I)]2 (I-TAM). The presence of allyl groups at the periphery would allow these macrocycles to act as potential building blocks. Optical absorption studies show that the bandgap can be tuned by exchanging the capping halides. These systems were also found to act as catalysts for the detoxification of CEES, a mustard gas simulant.
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Affiliation(s)
- Calvin Samuel
- School of Chemistry, University of Hyderabad, Hyderabad - 500046, India.
| | - Velpula Pramod
- School of Chemistry, University of Hyderabad, Hyderabad - 500046, India.
| | - Swandhana V S
- School of Chemistry, University of Hyderabad, Hyderabad - 500046, India.
| | - Alexander Steiner
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool L69 7ZD, UK
| | - Viswanathan Baskar
- School of Chemistry, University of Hyderabad, Hyderabad - 500046, India.
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279
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Zhang P, Chu Y, Zhu Y, Ma C, Ma P. The influence of external electric field on the structure of pentazole ionic salt. J Mol Model 2025; 31:128. [PMID: 40167770 DOI: 10.1007/s00894-025-06353-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2025] [Accepted: 03/19/2025] [Indexed: 04/02/2025]
Abstract
CONTEXT Pentazole ion salt is a cutting-edge new type of all-nitrogen ion high-energy material. When subjected to an external electric field (EEF), the structure and various properties of pentazole ion salts are altered. This article studied six types of pentazole ion salts (PA-1 ~ PA-6) under an external electric field (intensity 0 ~ 0.008 a.u.). GGA/PBE method was used to calculate and analyze the lattice constants, cell volume, density, bond length, bond angle, dihedral angle, energy bands, and density of states of pentazole ion salts. The results showed that six types of pentazole ion salts exhibited good crystal and geometric stability under the action of an external electric field. The band gap exhibits different levels of decrease, and electrons are more prone to transition, resulting in a continuous weakening of the stability of pentazole ion salts. The dense attitudes of PA-1, PA-3, PA-4, and PA-6 gradually shift towards the low-energy region, with an increase in peak width and a splitting phenomenon. The peak values show a gradually decreasing trend. The electronic structures of PA-2 and PA-5 exhibit high stability. PA-3 and PA-6 are more sensitive to the applied electric field. METHODS The Materials Studio software has been chosen for simulation and computation in this study. The GGA/PBE method has been utilized for the calculation and simulation of external electric fields, with the strength ranging from 0 to 0.008 a.u. and an increment gradient of 0.001 a.u.
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Affiliation(s)
- Peng Zhang
- College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China
| | - YuQin Chu
- College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China
| | - Yang Zhu
- College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China
| | - CongMing Ma
- College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China.
| | - Peng Ma
- College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China.
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280
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Ashirov T, Lim J, Robles A, Puangsamlee T, Fritz PW, Crochet A, Wang X, Hewson C, Iacomi P, Miljanić OŠ, Coskun A. Porous Organic Polymers Incorporating Shape-Persistent Cyclobenzoin Macrocycles for Organic Solvent Separation. Angew Chem Int Ed Engl 2025; 64:e202423809. [PMID: 39804699 DOI: 10.1002/anie.202423809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Accepted: 01/13/2025] [Indexed: 01/23/2025]
Abstract
The recovery and separation of organic solvents is highly important for the chemical industry and environmental protection. In this context, porous organic polymers (POPs) have significant potential owing to the possibility of integrating shape-persistent macrocyclic units with high guest selectivity. Here, we report the synthesis of a macrocyclic porous organic polymer (np-POP) and the corresponding model compound by reacting the cyclotetrabenzil naphthalene octaketone macrocycle with 1,2,4,5-tetraaminobenzene and 1,2-diaminobenzene, respectively, under solvothermal conditions. Co-crystallization of the macrocycle and the model compound with various solvent molecules revealed their size-selective inclusion within the macrocycle. Building on this finding, the np-POP with a hierarchical pore structure and a surface area of 579 m2 g-1 showed solvent uptake strongly correlated with their kinetic diameters. Solvents with kinetic diameters below 0.6 nm - such as acetonitrile and dichloromethane - showed high uptake capacities exceeding 7 mmol g-1. Xylene separation tests revealed a high overall uptake (~34 wt %), with o-xylene displaying a significantly lower uptake (~10 wt % less than other isomers), demonstrating the possibility of size and shape selective separation of organic solvents.
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Affiliation(s)
- Timur Ashirov
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700, Fribourg, Switzerland
| | - Jay Lim
- Department of Chemistry, University of Houston, 3585 Cullen Boulevard #112, Houston, TX 77204-5003, United States
| | - Alexandra Robles
- Department of Chemistry, University of Houston, 3585 Cullen Boulevard #112, Houston, TX 77204-5003, United States
| | - Thamon Puangsamlee
- Department of Chemistry, University of Houston, 3585 Cullen Boulevard #112, Houston, TX 77204-5003, United States
| | - Patrick W Fritz
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700, Fribourg, Switzerland
| | - Aurelien Crochet
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700, Fribourg, Switzerland
| | - Xiqu Wang
- Department of Chemistry, University of Houston, 3585 Cullen Boulevard #112, Houston, TX 77204-5003, United States
| | - Connor Hewson
- Surface Measurement Systems Ltd., 5 Wharfside, Rosemont Road, Alperton, Middlesex, HA0 4PE, United Kingdom
| | - Paul Iacomi
- Surface Measurement Systems Ltd., 5 Wharfside, Rosemont Road, Alperton, Middlesex, HA0 4PE, United Kingdom
| | - Ognjen Š Miljanić
- Department of Chemistry, University of Houston, 3585 Cullen Boulevard #112, Houston, TX 77204-5003, United States
- Faculty of Chemical Engineering, Industrial University of Ho Chi Minh City, Ho Chi Minh City, 71408, Vietnam
| | - Ali Coskun
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, CH-1700, Fribourg, Switzerland
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281
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Glomb T, Środa-Pomianek K, Palko-Łabuz A, Wesołowska O, Wikiera A, Wojtkowiak K, Jezierska A, Kochel A, Lesyk R, Świątek P. New Hydrazone Derivatives Based on Pyrazolopyridothiazine Core as Cytotoxic Agents to Colon Cancers: Design, Synthesis, Biological Evaluation, and Molecular Modeling. ChemMedChem 2025; 20:e202400687. [PMID: 39786320 DOI: 10.1002/cmdc.202400687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 12/18/2024] [Accepted: 01/08/2025] [Indexed: 01/12/2025]
Abstract
In this research, a series of novel hydrazone derivatives based on pyrazolopyridothiazinylacetohydrazide were designed, synthesized, and evaluated for their in vitro cytotoxic potency on several human colon cancer cells (HTC116, HT-29, and LoVo). After MTT and SRB assays four of the most active derivatives: hydrazide GH and hydrazones GH7, GH8, and GH11, were chosen for further investigation. Hydrazone GH11 had the highest cytotoxic activity (IC50 values of c.a. 0.5 μM). Additionally, the impact of novel derivatives on the oxidative stress level, apoptosis induction, and modulation of inflammation in colon cancer cells was examined. In all studies, the activity of the derivatives increased in order GH < GH7 < GH8 < GH11. At the same time, most of the research was conducted on compounds combined with apple pectin (PC). The most interesting observation was that all the studied derivatives applied together with PC showed significantly higher activity than observed in the case of using PC, hydrazide, or hydrazones separately. Finally, computational chemistry methods (molecular modeling and Density Functional Theory - DFT) were used to complement the experimental studies.
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Affiliation(s)
- Teresa Glomb
- Department of Medicinal Chemistry, Faculty of Pharmacy, Wroclaw Medical University, Borowska 211, 50-556, Wroclaw, Poland
| | - Kamila Środa-Pomianek
- Department of Biophysics and Neuroscience, Faculty of Medicine, Wroclaw Medical University, Chałubińskiego 3 A, 50-368, Wroclaw, Poland
| | - Anna Palko-Łabuz
- Department of Biophysics and Neuroscience, Faculty of Medicine, Wroclaw Medical University, Chałubińskiego 3 A, 50-368, Wroclaw, Poland
| | - Olga Wesołowska
- Department of Biophysics and Neuroscience, Faculty of Medicine, Wroclaw Medical University, Chałubińskiego 3 A, 50-368, Wroclaw, Poland
| | - Agnieszka Wikiera
- Department of Medical Physiology, Faculty of Health Sciences, Jagiellonian University Medical College, Michałowskiego Kraków, 12, 31-126, Krakow, Poland
| | - Kamil Wojtkowiak
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383, Wroclaw, Poland
| | - Aneta Jezierska
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383, Wroclaw, Poland
| | - Andrzej Kochel
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383, Wroclaw, Poland
| | - Roman Lesyk
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, Pekarska 69, 79-010, Lviv, Ukraine
| | - Piotr Świątek
- Department of Medicinal Chemistry, Faculty of Pharmacy, Wroclaw Medical University, Borowska 211, 50-556, Wroclaw, Poland
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282
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Dutta A, Dhasmana Y, Mohan TP, Selvakumar B, Chopra D. Crystal structure and Hirshfeld surface analysis of 6-[4-(1-cyclo-hexyl-1 H-tetra-zol-5-yl)but-oxy]-8-nitro-3,4-di-hydro-quinolin-2(1 H)-one. Acta Crystallogr E Crystallogr Commun 2025; 81:284-288. [PMID: 40200999 PMCID: PMC11974335 DOI: 10.1107/s2056989025001793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2025] [Accepted: 02/25/2025] [Indexed: 04/10/2025]
Abstract
The crystal structure of 6-[4-(1-cyclo-hexyl-1H-tetra-zol-5-yl)but-oxy]-8-nitro-3,4-di-hydro-quinolin-2(1H)-one, C20H26N6O4 (I), was characterized by single-crystal X-ray diffraction. The primary focus was to establish the position of the nitro group, the mol-ecular conformation, and the role of inter-molecular inter-actions towards the crystal packing of I. The crystalline structure is mainly consolidated by π-π, C-H⋯O, C-H⋯N, N⋯C(π) and O⋯C(π) inter-actions. The contributions of different inter-actions towards the crystal packing were further analyzed using Hirshfeld surface and fingerprint plots.
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Affiliation(s)
- Arnab Dutta
- Department of Chemistry Indian Institute of Science Education and Research Bhopal, Bhauri Bhopal 462066 India
| | - Yogesh Dhasmana
- Department of Chemistry Indian Institute of Science Education and Research Bhopal, Bhauri Bhopal 462066 India
| | - T. P. Mohan
- Bioneeds India Private Limited, P-3, Peenya Industrial Area, 1st Main Road, Peenya 1st stage, Bangalore 560094, Karnataka., India
| | - B. Selvakumar
- Bioneeds India Private Limited, P-3, Peenya Industrial Area, 1st Main Road, Peenya 1st stage, Bangalore 560094, Karnataka., India
| | - Deepak Chopra
- Department of Chemistry Indian Institute of Science Education and Research Bhopal, Bhauri Bhopal 462066 India
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283
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Salieva G, Kholikov T, Okmanov RY, Matchanov A, Khodjaniyazov KU, Kadirova S, Torambetov B. Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(2,4-di-methyl-benz-yl)sulfan-yl]pyrimidine-4,6-di-amine. Acta Crystallogr E Crystallogr Commun 2025; 81:328-331. [PMID: 40201011 PMCID: PMC11974338 DOI: 10.1107/s2056989025002440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Accepted: 03/17/2025] [Indexed: 04/10/2025]
Abstract
The title compound, C13H16N4S (DAMP-DMB), was synthesized through the reaction of 2,4-di-methyl-benzyl chloride with di-amino-pyrimidine-thiol. Single-crystal X-ray diffraction analysis confirmed that the compound crystallizes in the monoclinic crystal system, space group P21/c. The asymmetric unit contains a single mol-ecular entity. Structural examination revealed the presence of a dimeric arrangement consolidated by N-H⋯N hydrogen-bonding inter-actions. Additionally, Hirshfeld surface analysis indicated that H⋯H, N⋯H, C⋯H, and S⋯H contacts account for 98.9% of the total inter-molecular inter-actions to the Hirshfeld surface.
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Affiliation(s)
- Gulrukh Salieva
- National University of Uzbekistan named after Mirzo Ulugbek 4 University St Tashkent 100174 Uzbekistan
- Tashkent Medical Academy, 2 Farabi St, Tashkent, 100109, Uzbekistan
| | - Tursunali Kholikov
- National University of Uzbekistan named after Mirzo Ulugbek 4 University St Tashkent 100174 Uzbekistan
| | - Rasul Ya Okmanov
- S. Yunusov Institute of the Chemistry of Plant Substances Academy of Sciences of Uzbekistan Mirzo Ulugbek St 77 Tashkent 100170 Uzbekistan
| | - Alimjon Matchanov
- Institute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, M. Ulugbek St, 83, Tashkent, 100125, Uzbekistan
| | - Khamid U Khodjaniyazov
- Institute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, M. Ulugbek St, 83, Tashkent, 100125, Uzbekistan
| | - Shakhnoza Kadirova
- National University of Uzbekistan named after Mirzo Ulugbek 4 University St Tashkent 100174 Uzbekistan
| | - Batirbay Torambetov
- National University of Uzbekistan named after Mirzo Ulugbek 4 University St Tashkent 100174 Uzbekistan
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284
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Mohamed-Ezzat RA, Kariuki BM, Al-Ashmawy AAK, Srour AM. Synthesis and crystal structure of 5-{( E)-[(1 H-indol-3-ylformamido)-imino]-meth-yl}-2-meth-oxy-phenyl propane-1-sulfonate. Acta Crystallogr E Crystallogr Commun 2025; 81:310-313. [PMID: 40201003 PMCID: PMC11974325 DOI: 10.1107/s2056989025002087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2025] [Accepted: 03/05/2025] [Indexed: 04/10/2025]
Abstract
In the title mol-ecule, C20H21N3O5S, the methyl-ideneformohydrazide and meth-oxy-benzene groups are almost coplanar, with the indolyl group being rotated farther from the plane. The mol-ecules in the crystal structure form chains parallel to the a-axis direction through N-H⋯O hydrogen-bonding inter-actions. Neighbouring chains are linked by N-H⋯O contacts to form a three-dimensional network.
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Affiliation(s)
- Reham A. Mohamed-Ezzat
- Chemistry of Natural and Microbial Products Department National Research, Centre,CairoEgypt
| | - Benson M. Kariuki
- School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10, 3AT, United Kingdom
| | - Aisha A. K. Al-Ashmawy
- Department of Therapeutic Chemistry, National Research Centre, Dokki, Cairo, 12622, Egypt
| | - Aladdin M. Srour
- Department of Therapeutic Chemistry, National Research Centre, Dokki, Cairo, 12622, Egypt
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285
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Wijesekera GIP, Rushton IG, Samant VA, Gbadamosi FA, Islam MF, Smith MD, Wetthasinghe ST, Garashchuk S, Shimizu LS. Kinetic Control and Trapping in the Supramolecular Polymerization of m-Terphenyl Bis-Urea Macrocycles. Chemistry 2025; 31:e202404552. [PMID: 39918548 PMCID: PMC11962356 DOI: 10.1002/chem.202404552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Indexed: 02/19/2025]
Abstract
Herein, we examine pathway complexity in the supramolecular polymerization of a novel m-terphenyl bis-urea macrocycle. Designed to induce kinetically metastable states, the macrocycle's concentration-dependent aggregation was studied via 1H NMR and IR spectroscopy in THF and CHCl₃. Temperature-dependent UV-Vis spectroscopy in water/THF revealed a cooperative nucleation-growth mechanism, indicated by a shift in λmax to longer wavelengths upon cooling. Morphological studies using DLS, AFM, and SEM demonstrated fibrous aggregate formation. Thermal hysteresis observed in assembly-disassembly cycles indicated kinetically trapped species, with cooling governed by kinetic control and heating by thermodynamic processes. Deviations in ΔH values during cooling, compared to van't Hoff analysis and alignment of heating ΔH values with thermodynamic predictions, reinforced this distinction. Spontaneous nucleation retardation, resulting from monomer trapping, led to lag times of up to 50 minutes under specific conditions. Computational studies revealed the parallel urea conformation as the more stable monomer configuration, whereas the antiparallel conformation is more stable in dimers. By probing pathway complexity of the macrocycle, we demonstrate a distinct ability to control and stabilize kinetically trapped states, broadening the scope for designing macrocyclic supramolecular polymers with tailored properties. This work deepens our understanding of supramolecular dynamics, exploring ON-pathway mechanisms and advancing tunable supramolecular materials.
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Affiliation(s)
| | - Isabella G. Rushton
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Vaibhavi A. Samant
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Fahidat A. Gbadamosi
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Md Faizul Islam
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Mark D. Smith
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Shehani T. Wetthasinghe
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Sophya Garashchuk
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
| | - Linda S. Shimizu
- Department of Chemistry and BiochemistryUniversity of South CarolinaColumbiaSouth Carolina29208USA
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286
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Kodama K, Kondo Y, Hirose T. Solvent-Induced Chirality Switching in the Enantioseparation of Hydroxycarboxylic Acids with a Quaternary Stereogenic Center. ACS OMEGA 2025; 10:12129-12134. [PMID: 40191346 PMCID: PMC11966323 DOI: 10.1021/acsomega.4c10205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2024] [Revised: 02/15/2025] [Accepted: 02/20/2025] [Indexed: 04/09/2025]
Abstract
The enantiomer separation of three isomeric hydroxycarboxylic acids with a quaternary stereogenic center via diastereomeric salt formation with (1R,2S)-2-amino-1,2-diphenylethanol was demonstrated. Racemic acid 1, with a quaternary chiral center at the β-position, was separated with nearly ideal efficiency. The stereochemistry of acids 2 and 3 incorporated in the less-soluble salts was reversed depending on the recrystallization solvents, and both enantiomers were accessible. The mechanism of this chirality switching was discussed based on the crystal structures of the less-soluble diastereomeric salts; the solvation of the salt with an alcohol molecule changed the hydrogen-bonding network and its stability.
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Affiliation(s)
- Koichi Kodama
- Graduate School of Science
and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama 338-8570, Japan
| | - Yumi Kondo
- Graduate School of Science
and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama 338-8570, Japan
| | - Takuji Hirose
- Graduate School of Science
and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama 338-8570, Japan
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287
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Yu J, Liu Y, Liu H, Wen B, Zhang L, Fan C. Mg 20.66Al 12.24Zn 20.04. IUCRDATA 2025; 10:x250306. [PMID: 40337318 PMCID: PMC12054752 DOI: 10.1107/s2414314625003062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2025] [Accepted: 04/03/2025] [Indexed: 05/09/2025] Open
Abstract
The title single-crystal (icosa-magnesium dodeca-aluminium icosa-zinc), was obtained during the synthesis of an Mg-Al-Zn alloy at high pressure and temperature. It crystallizes in space group Im3 (No. 204) with seven distinct metal-atom sites: three are occupied by aluminium and zinc, one by zinc and magnesium and three by magnesium (two partially occupied). One of the Al/Zn sites has icosa-hedral coordination. There are significant difference between the current model and that of previous studies [Montagné & Tillard (2016 ▸). J. Alloys Compd. 656, 159-165].
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Affiliation(s)
- Jingchao Yu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Yibo Liu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Huizi Liu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Bin Wen
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Lifeng Zhang
- School of Mechanical and Materials Engineering North China University of Technology,BeijingPeople’s Republic of China
| | - Changzeng Fan
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
- Hebei Key Lab for Optimizing Metal Product Technology and Performance Yanshan University,Qinhuangdao 066004 People’s Republic of China
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288
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Li J, Liu H, Liu Y, Wen B, Zhang L, Fan C. Nonamagnesium diruthenium, Mg 9Ru 2. IUCRDATA 2025; 10:x250305. [PMID: 40337310 PMCID: PMC12054747 DOI: 10.1107/s2414314625003050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2025] [Accepted: 04/03/2025] [Indexed: 05/09/2025] Open
Abstract
A monoclinic phase with chemical composition of Mg9Ru2, nona-magnesium diruthenium, was obtained through high-pressure sinter-ing of a mixture with an initial chemical composition of MgRuB. The Mg9Ru2 phase crystallizes in the C2/c space group with Z = 8 and is isotypic with the previously reported In0.74Ir3.3Mg17.96 and In1.9Ir3Mg17.1 phases.
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Affiliation(s)
- Junhui Li
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Huizi Liu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Yibo Liu
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Bin Wen
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
| | - Lifeng Zhang
- School of Mechanical and Materials Engineering North China University of Technology,BeijingPeople’s Republic of China
| | - Changzeng Fan
- State Key Laboratory of Metastable Materials Science and Technology Yanshan University,Qinhuangdao 066004 People’s Republic of China
- Hebei Key Lab for Optimizing Metal Product Technology and Performance Yanshan University,Qinhuangdao 066004 People’s Republic of China
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289
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Malan FP, Potgieter K, Meijboom R. (Nitrito-κ 2 O: O')bis-[tris-(4-fluoro-phen-yl)phosphine-κ P]silver(I). IUCRDATA 2025; 10:x250296. [PMID: 40337317 PMCID: PMC12054751 DOI: 10.1107/s2414314625002962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Accepted: 04/02/2025] [Indexed: 05/09/2025] Open
Abstract
The mol-ecular structure of the title AgI complex, [Ag(NO2)(C18H12F3P)2], features a distorted tetra-hedral geometry about the central AgI atom, with a total range of bond angles spanning from 49.80 (5) to 114.92 (1)°. The distortion arises primarily due to the small bite angle [49.80 (5)°] of the nitrito ligand. The compound crystallizes with one mol-ecule in the asymmetric unit, in the space group P21/n, with Z = 4 and Z' = 1.
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Affiliation(s)
- Frederick P. Malan
- Department of Chemistry, University of Pretoria, Lynnwood Road, Hatfield, Pretoria, 0002, South Africa
| | - Kariska Potgieter
- Department of Chemical Sciences, University of Johannesburg, PO Box 524, Auckland Park, 2006, Johannesburg, South Africa
| | - Reinout Meijboom
- Department of Chemical Sciences, University of Johannesburg, PO Box 524, Auckland Park, 2006, Johannesburg, South Africa
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290
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Ummer MR, NizamMohideen M, Noorulla MN, Moolan Khaja AS. Synthesis, crystal structure, and in silico mol-ecular docking studies of 4-hy-droxy-3,5-di-meth-oxy-benzaldehyde (6-chloro-pyridazin-3-yl)hydrazone monohydrate. Acta Crystallogr E Crystallogr Commun 2025; 81:336-340. [PMID: 40200997 PMCID: PMC11974334 DOI: 10.1107/s205698902500252x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Accepted: 03/19/2025] [Indexed: 04/10/2025]
Abstract
In the title compound, C13H13ClN4O3·H2O, the organic mol-ecule has an E configuration with regard to the C=N bond of the hydrazone bridge. The phenyl and pyridazine rings subtend a dihedral angle of 2.1 (1)° between their mean planes, while the hydrazone moiety makes dihedral angles of 1.6 (2) and 3.0 (2)°, respectively, with these aromatic rings. This renders the entire mol-ecule comparably flat. A C-H⋯N hydrogen bond generates an inversion dimer with a large R 2 2(14) ring motif. Within this ring, a further C-H⋯N hydrogen bond establishes a smaller R 2 2(8) ring. The mol-ecules of a dimer are thereby firmly linked by four hydrogen bonds. A bifurcated O-H⋯(O,O) hydrogen bond is formed between a water hydrogen atom and the hydroxyl and meth-oxy oxygen atoms of an adjacent mol-ecule, leading to the formation of an R 2 1(5) membered ring. C-H⋯π and face-to-face π-π stacking inter-actions are also present in the two-dimensional framework, which may be of relevance for the packing. In a complementary analysis, the compound was docked in silico to EGFR and HER2 receptors and the results imply that the compound targets EGFR preferentially over HER2.
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Affiliation(s)
- Muhammed Rafi Ummer
- Post-Graduate and Research Department of Chemistry The New College University of Madras,Chennai 600 014 Tamilnadu India
| | - M. NizamMohideen
- Department of Physics The New College Chennai 600 014 University of Madras,Tamil NaduIndia
| | - Mohammed Nazrudeen Noorulla
- Post-Graduate and Research Department of Chemistry The New College University of Madras,Chennai 600 014 Tamilnadu India
| | - Abubacker Sidhik Moolan Khaja
- Post-Graduate and Research Department of Chemistry The New College University of Madras,Chennai 600 014 Tamilnadu India
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291
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Lerch TG, Albert DR, Gau M, Rajaseelan E. Syntheses and crystal structures of 4-benzyl-1-ethyl-1,2,4-triazolium bromide and its corresponding NHC complexes of rhodium and iridium. Acta Crystallogr E Crystallogr Commun 2025; 81:350-357. [PMID: 40201006 PMCID: PMC11974332 DOI: 10.1107/s2056989025002671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2025] [Accepted: 03/24/2025] [Indexed: 04/10/2025]
Abstract
The syntheses and crystal structures of a triazolium salt, 4-benzyl-1-ethyl-1,2,4-triazolium bromide, C11H14N3 +·Br- (2), and the corresponding N-heterocyclic carbene complexes, (4-benzyl-1-ethyl-1,2,4-triazol-5-yl-idene)chlorido-[(1,2,5,6-η)-cyclo-octa-1,5-diene]rhodium(I), [RhCl(C8H12)(C11H13N3)] (3), (4-benzyl-1-ethyl-1,2,4-triazol-5-yl-idene)[(1,2,5,6-η)-cyclo-octa-1,5-diene](tri-phenyl-phosphane)iridium(I) tetra-fluorido-borate, [Ir(C8H12)(C11H13N3)(C18H15P)]BF4 (5), and (4-benzyl-1-ethyl-1,2,4-triazol-5-yl-idene)[(1,2,5,6-η)-cyclo-octa-1,5-diene](tri-cyclo-hexyl-phosphane)iridium(I) tetra-fluorido-borate dicholoro-methane sesquisolvate, [Ir(C8H12)(C11H13N3)(C18H33P)]BF4·1.5CH2Cl2 (6), are presented. Complexes 2 and 6 crystallize in the monoclinic space group P21/c, complex 3 in the triclinic space group P1 and complex 5 in the triclinic space group P1 with two mol-ecules in the asymmetric unit. The three metal complexes 3, 5, and 6 have a distorted square-planar geometry around the metal ions. The N1-C1-N3 bond angle in the triazolium salt 2 is 107.1 (2)° and is observed in the range of 102.2 (3) to 103.8 (5)° in the NHC ligands in complexes 3, 5, and 6. The two substituent 'wing tips' in the NHC ligand (N-ethyl and N-benz-yl) are oriented in an anti-arrangement in compounds 2 and 3, a syn-arrangement in compound 6, and both syn and anti-arrangements in the two independent ion pairs in compound 5. All structures exhibit non-classical hydrogen-bonding inter-actions with the most acidic hydrogen atoms in complexes 2 and 3 playing critical roles in the orientations of structural units.
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Affiliation(s)
- Timothy G. Lerch
- Department of Chemistry Millersville University,Millersville PA 17551 USA
| | - Daniel R. Albert
- Department of Chemistry Millersville University,Millersville PA 17551 USA
| | - Michael Gau
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Edward Rajaseelan
- Department of Chemistry Millersville University,Millersville PA 17551 USA
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292
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Zhang YQ, Liu Y, Wang YQ, Jiang P, Li MM, Pan J, Guan W, Naseem A, Kuang HX, Yang BY. Three new schinortriterpenoids from the leaves of Schisandra chinensis (Turcz.) Baill. Nat Prod Res 2025; 39:2121-2129. [PMID: 38069504 DOI: 10.1080/14786419.2023.2290682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 11/15/2023] [Accepted: 11/27/2023] [Indexed: 04/09/2025]
Abstract
Three undescribed schinortriterpenoids, schinensilactones D-F (1-3), together with five known ones, namely, wuweizidilactone A (4), wuweizidilactone C (5), wuweizidilactone F (6), wuweizidilactone J (7) and wuweizidilactone N (8), were isolated from the leaves of Schisandra chinensis (Turcz.) Baill. The structures of new compounds were established by analysis of their spectroscopic data including MS, IR, 1D- and 2D-NMR spectra. The absolute configuration of 1 was confirmed by single-crystal X-ray diffraction and calculated electronic circular dichroism (ECD) spectra. All compounds were evaluated for their neuroprotective effects against H2O2-induced injury in human neuroblastoma SH-SY5Y cell lines. Cell viability was remarkably reduced to 52.33% in H2O2-treated cells. Compounds 5-7 exhibited moderate neuroprotective activities at 50 μM, with cell viability of 64.84%, 67.34% and 63.73%, respectively.
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Affiliation(s)
- Yi-Qiang Zhang
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Yan Liu
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Yu-Qing Wang
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Peng Jiang
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Meng-Meng Li
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Juan Pan
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Wei Guan
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Anam Naseem
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Hai-Xue Kuang
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
| | - Bing-You Yang
- Key Laboratory of Basic and Application Research of Beiyao, (Heilongjiang University of Chinese Medicine), Ministry of Education, Harbin, China
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293
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Lozinšek M. Single-crystal structure of the spicy capsaicin. Acta Crystallogr C Struct Chem 2025; 81:188-192. [PMID: 40052876 PMCID: PMC11970115 DOI: 10.1107/s2053229625001706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2025] [Accepted: 02/23/2025] [Indexed: 04/05/2025] Open
Abstract
The crystal structure of capsaicin (C18H27NO3), or trans-8-methyl-N-vanillylnon-6-enamide, the natural product responsible for the spiciness of chilli peppers, was determined using low-temperature single-crystal X-ray diffraction. The reported crystal structure is in good agreement with previous determinations based on powder X-ray diffraction data. The localization and free refinement of all H atoms revealed that each capsaicin molecule is hydrogen bonded to four other molecules, with the O-H and N-H groups acting as hydrogen-bond donors, and the C=O group serving as a bifurcated hydrogen-bond acceptor.
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Affiliation(s)
- Matic Lozinšek
- Jožef Stefan Institute, Jamova cesta 39, 1000 Ljubljana, Slovenia
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294
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Aher A, Bera P, Brandao P, Sharda S, Khatua S, Manna SK, Manhas A, Bera P. Anticancer efficacy of thiazole-naphthyl derivatives targeting DNA: Synthesis, crystal structure, density functional theory, molecular docking, and molecular dynamics studies. Int J Biol Macromol 2025; 299:140039. [PMID: 39828180 DOI: 10.1016/j.ijbiomac.2025.140039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 01/13/2025] [Accepted: 01/16/2025] [Indexed: 01/22/2025]
Abstract
Two newly synthesized ligands, 1-((2-(4-(4-methoxyphenyl)thiazol-2-yl)hydrazono)methyl)naphthalen-2-ol (HL1) and 1-((2-(4-(naphthalen-1-yl)thiazol-2-yl)hydrazono)methyl)naphthalen-2-ol (HL2) were characterized using spectroscopy and single X-ray crystallography. Both belong to triclinic systems with space groups P21/c (HL1) and P-1 (HL2), exhibiting planar structures. Biological assays revealed significant antitumor activity, with HL2 showing significant antitumor activity against HepG2 cells (IC50: 3.2 ± 0.1 μM) compared to HL1 (IC50: 7.3 ± 0.3 μM). Mechanistic studies revealed HL2 induces apoptosis, while HL1 triggers necroptosis, and both were non-toxic to peripheral blood mononuclear cells (PBMC). UV-Vis titration showed that HL2 binds more strongly to DNA (Kb: 1.08 ± 0.215 × 105 M-1) than HL1 (Kb: 1.02 ± 0.155 × 104 M-1), attributed to stronger naphthyl chromophore stacking with DNA base pairs. Supporting this, hypochromic effects, circular dichroism spectra, and increased DNA viscosity suggest HL2 is a moderate intercalator, while HL1 functions as a groover binder. Docking studies revealed that in HL2, an additional naphthyl group enhances DNA binding affinity, explaining its superior efficacy. Molecular dynamics simulations further confirmed the stable binding of both ligands to DNA in the biological environment. These experimental and theoretical findings highlight the superior binding affinity of HL2 and its potential as a promising candidate for cancer therapy.
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Affiliation(s)
- Abhishek Aher
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Pradip Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Panskura R.S, Midnapore (East), West Bengal 721152, India; Department of Chemistry, Kandi Raj College, Murshidabad, West Bengal 742137, India
| | - Paula Brandao
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Saphy Sharda
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Sabyasachi Khatua
- Yogoda Satsanga Palpara Mahavidyalaya, Palpara, Purba Medinipur 721458, West Bengal 721458, India
| | - Sunil Kumar Manna
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Anu Manhas
- Department of Chemistry, School of Energy Technology, Pandit Deendayal Energy University, Gandhinagar 382426, India.
| | - Pulakesh Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Panskura R.S, Midnapore (East), West Bengal 721152, India.
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295
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Nyapola C, Zamisa SJ, Omondi B, Njogu EM. 5-Acetyl-2-amino-4-(2-fluoro-phen-yl)-6-methyl-4 H-pyran-3-carbo-nitrile dichlo-methane hemisolvate. IUCRDATA 2025; 10:x250337. [PMID: 40337316 PMCID: PMC12054746 DOI: 10.1107/s2414314625003372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2025] [Accepted: 04/14/2025] [Indexed: 05/09/2025] Open
Abstract
The title compound, 2C15H13FN2O2·CH2Cl2, crystallizes with two main mol-ecules in the asymmetric unit with a disordered di-chloro-methane solvent mol-ecule. The dihedral angles between the fluoro phenyl ring and 4H-pyran ring are 74.36 (15) and 80.69 (15)° in the two mol-ecules. In the crystal, N-H⋯N and N-H⋯O hydrogen bonds link the mol-ecules into a two-dimensional supra-molecular network propagating in the (100) plane.
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Affiliation(s)
- Carren Nyapola
- University of KwaZulu-Natal, School of Chemistry and Physics, Private bag X54001, Durban, 4000, South Africa
| | - Sizwe J. Zamisa
- University of KwaZulu-Natal, School of Chemistry and Physics, Private bag X54001, Durban, 4000, South Africa
| | - Bernard Omondi
- University of KwaZulu-Natal, School of Chemistry and Physics, Private bag X54001, Durban, 4000, South Africa
| | - Eric M. Njogu
- Multimedia University of Kenya, PO Box 15653-00503, Nairobi, Kenya
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296
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Wójcicka A, Bryndal I, Krupińska M, Wolska A, Milewski J, Pyra A, Becan L, Mączyński M, Matera-Witkiewicz A. 7-(4-Chlorophenyl)-1-hydroxy-5-methylpyrido[3,4-d]pyridazin-4(3H)-one: synthesis, solvatomorphism, in vitro anti-inflammatory and cytotoxic activity studies and in silico analysis. Acta Crystallogr C Struct Chem 2025; 81:198-211. [PMID: 40067331 DOI: 10.1107/s2053229625001858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 02/27/2025] [Indexed: 04/05/2025] Open
Abstract
The newly obtained compound 7-(4-chlorophenyl)-1-hydroxy-5-methylpyrido[3,4-d]pyridazin-4(3H)-one (CPM) was crystallized as two new variable solvates, namely, the dimethyl sulfoxide monosolvate, C14H10ClN3O2·C2H6SO (I), and the sesquisolvate, C14H10ClN3O2·1.5C2H6SO (II), and their structures were confirmed by single-crystal X-ray diffraction analysis. In previous work, 1-hydroxy-5-methyl-7-phenylpyrido[3,4-d]pyridazin-4(3H)-one (PM) was found to display anticancer activity. In the next step of our studies, we synthesized a new derivative of PM, introducing a Cl atom into the PM structure, obtaining CPM, which showed not only anticancer but also anti-inflammatory activity. CPM and the new semi-products of each step of the synthesis were examined by 1H NMR, 13C NMR and FT-IR spectroscopic analyses, and mass spectrometry. CPM forms (I) and (II) crystallize in the triclinic P1 and monoclinic C2/c space groups, respectively, and differ in the stoichiometry of the CPM and DMSO molecules in the crystal lattice, being 1:1 and 1:1.5 for (I) and (II), respectively. A powder X-ray diffraction analysis was performed only for solvate (I) due to the lack of stability of solvate (II). The potential cytotoxicity of CPM was evaluated against the normal cell lines L929 and RPTEC, as well as the cancer cell lines A172, AGS, CACO-2 and HepG2. The anti-inflammatory activity of CPM was also evaluated using colorimetric assay for the inhibition of COX-1 and COX-2. The same biological tests were carried out for PM to compare the activities of both compounds. The biological studies revealed that CPM does not exhibit more activity than PM. Moreover, in silico analysis of the bioavailability and molecular docking were performed.
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Affiliation(s)
- Anna Wójcicka
- Department of Organic Chemistry and Pharmaceutical Technology, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Iwona Bryndal
- Department of Organic Chemistry and Pharmaceutical Technology, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Magdalena Krupińska
- Screening of Biological Activity Assays and Collection of Biological Material Laboratory, Wrocław Medical University Biobank, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Aleksandra Wolska
- Screening of Biological Activity Assays and Collection of Biological Material Laboratory, Wrocław Medical University Biobank, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Jakub Milewski
- Screening of Biological Activity Assays and Collection of Biological Material Laboratory, Wrocław Medical University Biobank, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Anna Pyra
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie, 50-383 Wrocław, Poland
| | - Lilianna Becan
- Department of Organic Chemistry and Pharmaceutical Technology, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Marcin Mączyński
- Department of Organic Chemistry and Pharmaceutical Technology, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
| | - Agnieszka Matera-Witkiewicz
- Screening of Biological Activity Assays and Collection of Biological Material Laboratory, Wrocław Medical University Biobank, Faculty of Pharmacy, Wrocław Medical University, 211A Borowska, 50-556 Wrocław, Poland
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297
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Yoshizawa F, Okui A, Nakane D, Akitsu T. Crystal structure and Hirshfeld surface analysis of aqua-(1 H-imidazole-κ N 3)[ N-(2-oxido-benzyl-idene)threonato-κ 3 O, N, O']zinc(II). Acta Crystallogr E Crystallogr Commun 2025; 81:332-335. [PMID: 40201004 PMCID: PMC11974323 DOI: 10.1107/s2056989025002385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2025] [Accepted: 03/16/2025] [Indexed: 04/10/2025]
Abstract
The title complex, [Zn(C11H11NO4)(C3H4N2)(H2O)], which includes a tridentate ligand, was synthesized from l-threonine and salicyl-aldehyde. One water mol-ecule and one imidazole mol-ecule additionally coordinate the zinc(II) center in a distorted trigonal-bipyramidal geometry. The crystal structure features N-H⋯O and O-H⋯O hydrogen bonds. A Hirshfeld surface analysis indicates that the most important contributions to the packing are from H⋯H/H⋯H (50.7%) and O⋯H/H⋯O (25.0%) contacts.
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Affiliation(s)
- Fumishi Yoshizawa
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Anna Okui
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Daisuke Nakane
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Takashiro Akitsu
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
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298
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Shikhaliyev NQ, Babazade AA, Atakishiyeva GT, Shikhaliyeva IM, Maharramov AM, Khrustalev VN, Atioğlu Z, Akkurt M, Bhattarai A. Crystal structures and Hirshfeld surface analyses of methyl (2 Z)-(4-bromo-phen-yl)[2-(4-methyl-phen-yl)hydrazinyl-idene]acetate, methyl (2 Z)-(4-bromophen-yl)[2-(3,5-di-methyl-phen-yl)hydrazinyl-idene]acetate, methyl (2 Z)-[2-(4-meth-oxy-phen-yl)hydrazinyl-idene](3-nitro-phen-yl)acetate, methyl (2 E)-(4-chlorophen-yl)(2-phenyl-hydrazinyl-idene)acetate and methyl (2 Z)-[2-(4-bromo-phen-yl)hydrazinylidene](4-chloro-phen-yl)acetate. Acta Crystallogr E Crystallogr Commun 2025; 81:314-323. [PMID: 40201001 PMCID: PMC11974330 DOI: 10.1107/s2056989025002051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Accepted: 03/04/2025] [Indexed: 04/10/2025]
Abstract
Mol-ecules of the title compounds, methyl (Z)-2-(4-bromo-phen-yl)-2-[2-(4-methyl-phen-yl)hydrazin-1-yl-idene]acetate, C16H15BrN2O 2 , (1), methyl (Z)-2-(4-bromo-phen-yl)-2-[2-(3,5-di-methyl-phen-yl)hydrazin-1-yl-idene]acetate, C17H17BrN2O2, (2), methyl (Z)-2-[2-(4-meth-oxy-phen-yl)hydrazin-1-yl-idene]-2-(3-nitro-phen-yl)acetate, C16H15N3O5, (3), and methyl (Z)-2-[2-(4-bromo-phen-yl)hydrazin-1-yl-idene]-2-(4-chloro-phen-yl)acetate, C15H12BrClN2O2, (5), adopt a Z configuration with respect to the central C=N bond, while methyl (E)-2-(4-chloro-phen-yl)-2-(2-phenyl-hydrazin-1-yl-idene)acetate, C15H13ClN2O2, (4), adopts an E configuration. The atoms of the phenyl ring of the bromo-phenyl group of (1) are disordered over two sets of sites with equal occupancies. In the crystal structure of (1), mol-ecules connected by C-H⋯N hydrogen bonds are further linked by C-H⋯π inter-actions, forming ribbons parallel to [010]. In (2), pairs of mol-ecules are linked by C-H⋯π inter-actions parallel to [100]. In (3), C-H⋯O hydrogen bonds form ribbons parallel to [010], while in (4), the mol-ecules are bonded together by C-H⋯N, C-H⋯Cl, C-H⋯O and C-H⋯π inter-actions parallel to [010]. In (5), C-H⋯Br, C-H⋯O and C-H⋯Cl inter-actions lead to the formation of layers parallel to (002). C-H⋯π inter-actions also occur between these planes. Hirshfeld surface analyses were performed to investigate and qu-antify the inter-molecular inter-actions between the mol-ecules of all compounds.
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Affiliation(s)
- Namiq Q. Shikhaliyev
- Department of Chemical Engineering, Baku Engineering University, Khirdalan City, 120 AZ0101 Hasan Aliyev Street, Baku, Azerbaijan
| | - Aliyar A. Babazade
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Gulnar T. Atakishiyeva
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Irada M. Shikhaliyeva
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University) Miklukho-Maklay St 6 Moscow 117198 Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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299
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Majodina S, Walmsley R, Govender A, Hosten EC, Olivier J, Tshentu Z, Ogunlaja AS. Influence of Ligands on the Surface Characteristics of CoMo/γ-Al 2O 3 and Hydrodesulfurization Catalytic Activity on Dibenzothiophene-Type Compounds. ChemistryOpen 2025; 14:e202400123. [PMID: 40029011 PMCID: PMC11973508 DOI: 10.1002/open.202400123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 02/13/2025] [Indexed: 03/05/2025] Open
Abstract
Refractory sulfur compounds in fuel oils combust, releasing sulfur oxides (SOx) into the atmosphere, which is a significant source of pollution. In this study, we focused on comparing the surface properties and hydrodesulfurization (HDS) activity of CoMo-(L)/γ-Al2O3 containing chelating ligands (L), specifically acetic acid (AA), with those of ethylenediaminetetraacetic acid (EDTA), citric acid (CA). CoMo/γ-Al2O3, CoMo-AA/γ-Al2O3, CoMo-EDTA/γ-Al2O3 and CoMo/γ-Al2O3 were prepared by hydrothermal treatment of the mixtures of Co(NO3)2.6H2O and (NH4)6Mo7O24.4H2O with stoichiometric Co/Mo ratios and enriched with chelating ligands (L=AA, CA and EDTA). Based on the product distributions of the hydrodesulfurization (HDS) of dibenzothiophene (DBT), a reaction pathway of dibenzothiophene (DBT) HDS was proposed to follow hydrogenation (HYD) and direct desulfurization (DDS) routes. In addition, the ligand modification of CoMo/γ-Al2O3 catalysts resulted in enhancement of surface properties and HDS activity which is in the order of CoMo-CA/γ-Al2O3 (98 %)> CoMo-AA/γ-Al2O3 (94 %) > CoMo-EDTA/γ-Al2O3 (90 %) > CoMo/γ-Al2O3 (43 %). CoMo-AA/γ-Al2O3 presented a higher HYD/DDS ratio compared to CoMo-CA/γ-Al2O3, CoMo-EDTA/γ-Al2O3, and CoMo/γ-Al2O3, respectively which makes it a promising HDS catalyst.
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Affiliation(s)
| | - Ryan Walmsley
- Research and Development DivisionSasol Technology (Pty) LtdSasolburgSouth Africa
| | - Alisa Govender
- Materials DivisionSasol Technology (Pty) LtdSasolburgSouth Africa
| | - Eric C. Hosten
- Department of ChemistryNelson Mandela UniversityGqeberhaSouth Africa
| | - Jaco Olivier
- Department of Physics and Centre for High Resolution (HRTEM)Nelson Mandela UniversityGqeberha (Port Elizabeth)South Africa
| | - Zenixole Tshentu
- Department of ChemistryNelson Mandela UniversityGqeberhaSouth Africa
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300
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Oladipo SD, Zamisa SJ, Luckay RC. ( E)- N-[4-(Di-ethyl-amino)-2-hy-droxy-benzyl-idene]-2,4,6-tri-methyl-benzenaminium nitrate. IUCRDATA 2025; 10:x250277. [PMID: 40337312 PMCID: PMC12054754 DOI: 10.1107/s2414314625002779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2025] [Accepted: 03/27/2025] [Indexed: 05/09/2025] Open
Abstract
The crystal structure of the title salt, C20H27N2O+·NO3 -, has a cationic (E)-mesityl-N-[4-(di-ethyl-amino)-benzyl-idene]benzenaminium species and a nitrate counter-ion in the asymmetric-unit. In the crystal, alternating inter-molecular O-H⋯O and C-H⋯O hydrogen-bonding occurs between neighbouring protonated Schiff bases and nitrate ions within a supra-molecular, chain-like architecture that extends along the crystallographic b-axis direction.
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Affiliation(s)
- Segun D. Oladipo
- Department of Chemistry and Polymer Science, University of Stellenbosch, Private, Bag X1, Matieland, Stellenbosch 7602, South Africa
| | - Sizwe J. Zamisa
- School of Chemistry and Physics, University of KwaZulu-Natal, Private Bag, X54001, Durban 4000, South Africa
| | - Robert C. Luckay
- Department of Chemistry and Polymer Science, University of Stellenbosch, Private, Bag X1, Matieland, Stellenbosch 7602, South Africa
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