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Anselmo S, Sancataldo G, Mørck Nielsen H, Foderà V, Vetri V. Peptide-Membrane Interactions Monitored by Fluorescence Lifetime Imaging: A Study Case of Transportan 10. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:13148-13159. [PMID: 34714654 PMCID: PMC8582253 DOI: 10.1021/acs.langmuir.1c02392] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 10/19/2021] [Indexed: 06/13/2023]
Abstract
The interest on detailed analysis of peptide-membrane interactions is of great interest in both fundamental and applied sciences as these may relate to both functional and pathogenic events. Such interactions are highly dynamic and spatially heterogeneous, making the investigation of the associated phenomena highly complex. The specific properties of membranes and peptide structural details, together with environmental conditions, may determine different events at the membrane interface, which will drive the fate of the peptide-membrane system. Here, we use an experimental approach based on the combination of spectroscopy and fluorescence microscopy methods to characterize the interactions of the multifunctional amphiphilic peptide transportan 10 with model membranes. Our approach, based on the use of suitable fluorescence reporters, exploits the advantages of phasor plot analysis of fluorescence lifetime imaging microscopy measurements to highlight the molecular details of occurring membrane alterations in terms of rigidity and hydration. Simultaneously, it allows following dynamic events in real time without sample manipulation distinguishing, with high spatial resolution, whether the peptide is adsorbed to or inserted in the membrane.
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Affiliation(s)
- Sara Anselmo
- Dipartimento
di Fisica e Chimica−Emilio Segré, Università degli Studi di Palermo, Viale delle Scienze ed. 18 90128, Palermo, Italy
| | - Giuseppe Sancataldo
- Dipartimento
di Fisica e Chimica−Emilio Segré, Università degli Studi di Palermo, Viale delle Scienze ed. 18 90128, Palermo, Italy
| | - Hanne Mørck Nielsen
- Department
of Pharmacy, University of Copenhagen, Universitetsparken 2 2100, Copenhagen, Denmark
| | - Vito Foderà
- Department
of Pharmacy, University of Copenhagen, Universitetsparken 2 2100, Copenhagen, Denmark
| | - Valeria Vetri
- Dipartimento
di Fisica e Chimica−Emilio Segré, Università degli Studi di Palermo, Viale delle Scienze ed. 18 90128, Palermo, Italy
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Zhang Y, Fernie AR. Stable and Temporary Enzyme Complexes and Metabolons Involved in Energy and Redox Metabolism. Antioxid Redox Signal 2021; 35:788-807. [PMID: 32368925 DOI: 10.1089/ars.2019.7981] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Significance: Alongside well-characterized permanent multimeric enzymes and multienzyme complexes, relatively unstable transient enzyme-enzyme assemblies, including metabolons, provide an important mechanism for the regulation of energy and redox metabolism. Critical Issues: Despite the fact that enzyme-enzyme assemblies have been proposed for many decades and experimentally analyzed for at least 40 years, there are very few pathways for which unequivocal evidence for the presence of metabolite channeling, the most frequently evoked reason for their formation, has been provided. Further, in contrast to the stronger, permanent interactions for which a deep understanding of the subunit interface exists, the mechanism(s) underlying transient enzyme-enzyme interactions remain poorly studied. Recent Advances: The widespread adoption of proteomic and cell biological approaches to characterize protein-protein interaction is defining an ever-increasing number of enzyme-enzyme assemblies as well as enzyme-protein interactions that likely identify factors which stabilize such complexes. Moreover, the use of microfluidic technologies provided compelling support of a role for substrate-specific chemotaxis in complex assemblies. Future Directions: Embracing current and developing technologies should render the delineation of metabolons from other enzyme-enzyme complexes more facile. In parallel, attempts to confirm that the findings reported in microfluidic systems are, indeed, representative of the cellular situation will be critical to understanding the physiological circumstances requiring and evoking dynamic changes in the levels of the various transient enzyme-enzyme assemblies of the cell. Antioxid. Redox Signal. 35, 788-807.
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Affiliation(s)
- Youjun Zhang
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria.,Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria.,Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany
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Abstract
Layered Double Hydroxides (LDHs) are a relevant class of inorganic lamellar nanomaterials that have attracted significant interest in life science-related applications, due to their highly controllable synthesis and high biocompatibility. Under a general point of view, this class of materials might have played an important role for the origin of life on planet Earth, given their ability to adsorb and concentrate life-relevant molecules in sea environments. It has been speculated that the organic–mineral interactions could have permitted to organize the adsorbed molecules, leading to an increase in their local concentration and finally to the emergence of life. Inspired by nature, material scientists, engineers and chemists have started to leverage the ability of LDHs to absorb and concentrate molecules and biomolecules within life-like compartments, allowing to realize highly-efficient bioinspired platforms, usable for bioanalysis, therapeutics, sensors and bioremediation. This review aims at summarizing the latest evolution of LDHs in this research field under an unprecedented perspective, finally providing possible challenges and directions for future research.
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Arrabito G, Ferrara V, Bonasera A, Pignataro B. Artificial Biosystems by Printing Biology. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e1907691. [PMID: 32511894 DOI: 10.1002/smll.201907691] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Revised: 05/09/2020] [Indexed: 05/09/2023]
Abstract
The continuous progress of printing technologies over the past 20 years has fueled the development of a plethora of applications in materials sciences, flexible electronics, and biotechnologies. More recently, printing methodologies have started up to explore the world of Artificial Biology, offering new paradigms in the direct assembly of Artificial Biosystems (small condensates, compartments, networks, tissues, and organs) by mimicking the result of the evolution of living systems and also by redesigning natural biological systems, taking inspiration from them. This recent progress is reported in terms of a new field here defined as Printing Biology, resulting from the intersection between the field of printing and the bottom up Synthetic Biology. Printing Biology explores new approaches for the reconfigurable assembly of designed life-like or life-inspired structures. This work presents this emerging field, highlighting its main features, i.e., printing methodologies (from 2D to 3D), molecular ink properties, deposition mechanisms, and finally the applications and future challenges. Printing Biology is expected to show a growing impact on the development of biotechnology and life-inspired fabrication.
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Affiliation(s)
- Giuseppe Arrabito
- Department of Physics and Chemistry - Emilio Segrè, University of Palermo, Viale delle Scienze, Building 17, Palermo, 90128, Italy
| | - Vittorio Ferrara
- Department of Physics and Chemistry - Emilio Segrè, University of Palermo, Viale delle Scienze, Building 17, Palermo, 90128, Italy
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria, 6, Catania, 95125, Italy
| | - Aurelio Bonasera
- Department of Physics and Chemistry - Emilio Segrè, University of Palermo, Viale delle Scienze, Building 17, Palermo, 90128, Italy
| | - Bruno Pignataro
- Department of Physics and Chemistry - Emilio Segrè, University of Palermo, Viale delle Scienze, Building 17, Palermo, 90128, Italy
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Arrabito G, Aleeva Y, Ferrara V, Prestopino G, Chiappara C, Pignataro B. On the Interaction between 1D Materials and Living Cells. J Funct Biomater 2020; 11:E40. [PMID: 32531950 PMCID: PMC7353490 DOI: 10.3390/jfb11020040] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 06/03/2020] [Accepted: 06/05/2020] [Indexed: 01/08/2023] Open
Abstract
One-dimensional (1D) materials allow for cutting-edge applications in biology, such as single-cell bioelectronics investigations, stimulation of the cellular membrane or the cytosol, cellular capture, tissue regeneration, antibacterial action, traction force investigation, and cellular lysis among others. The extraordinary development of this research field in the last ten years has been promoted by the possibility to engineer new classes of biointerfaces that integrate 1D materials as tools to trigger reconfigurable stimuli/probes at the sub-cellular resolution, mimicking the in vivo protein fibres organization of the extracellular matrix. After a brief overview of the theoretical models relevant for a quantitative description of the 1D material/cell interface, this work offers an unprecedented review of 1D nano- and microscale materials (inorganic, organic, biomolecular) explored so far in this vibrant research field, highlighting their emerging biological applications. The correlation between each 1D material chemistry and the resulting biological response is investigated, allowing to emphasize the advantages and the issues that each class presents. Finally, current challenges and future perspectives are discussed.
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Affiliation(s)
- Giuseppe Arrabito
- Dipartimento di Fisica e Chimica—Emilio Segrè, University of Palermo, Viale delle Scienze, Ed.17, 90128 Palermo, Italy;
| | - Yana Aleeva
- INSTM UdR Palermo, Viale delle Scienze, Ed.17, 90128 Palermo, Italy; (Y.A.); (C.C.)
| | - Vittorio Ferrara
- Dipartimento di Scienze Chimiche, Università di Catania, Viale Andrea Doria 6, 95125 Catania, Italy;
| | - Giuseppe Prestopino
- Dipartimento di Ingegneria Industriale, Università di Roma “Tor Vergata”, Via del Politecnico 1, I-00133 Roma, Italy;
| | - Clara Chiappara
- INSTM UdR Palermo, Viale delle Scienze, Ed.17, 90128 Palermo, Italy; (Y.A.); (C.C.)
| | - Bruno Pignataro
- Dipartimento di Fisica e Chimica—Emilio Segrè, University of Palermo, Viale delle Scienze, Ed.17, 90128 Palermo, Italy;
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Abstract
Solution-based printing approaches permit digital designs to be converted into physical objects by depositing materials in a layer-by-layer additive fashion from microscale to nanoscale resolution. The extraordinary adaptability of this technology to different inks and substrates has received substantial interest in the recent literature. In such a context, this review specifically focuses on the realization of inks for the deposition of ZnO, a well-known wide bandgap semiconductor inorganic material showing an impressive number of applications in electronic, optoelectronic, and piezoelectric devices. Herein, we present an updated review of the latest advancements on the ink formulations and printing techniques for ZnO-based nanocrystalline inks, as well as of the major applications which have been demonstrated. The most relevant ink-processing conditions so far explored will be correlated with the resulting film morphologies, showing the possibility to tune the ZnO ink composition to achieve facile, versatile, and scalable fabrication of devices of different natures.
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Ferrara V, Zito G, Arrabito G, Cataldo S, Scopelliti M, Giordano C, Vetri V, Pignataro B. Aqueous Processed Biopolymer Interfaces for Single-Cell Microarrays. ACS Biomater Sci Eng 2020; 6:3174-3186. [PMID: 33463257 PMCID: PMC7997111 DOI: 10.1021/acsbiomaterials.9b01871] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Single-cell microarrays are emerging tools to unravel intrinsic diversity within complex cell populations, opening up new approaches for the in-depth understanding of highly relevant diseases. However, most of the current methods for their fabrication are based on cumbersome patterning approaches, employing organic solvents and/or expensive materials. Here, we demonstrate an unprecedented green-chemistry strategy to produce single-cell capture biochips onto glass surfaces by all-aqueous inkjet printing. At first, a chitosan film is easily inkjet printed and immobilized onto hydroxyl-rich glass surfaces by electrostatic immobilization. In turn, poly(ethylene glycol) diglycidyl ether is grafted on the chitosan film to expose reactive epoxy groups and induce antifouling properties. Subsequently, microscale collagen spots are printed onto the above surface to define the attachment area for single adherent human cancer cells harvesting with high yield. The reported inkjet printing approach enables one to modulate the collagen area available for cell attachment in order to control the number of captured cells per spot, from single-cells up to double- and multiple-cell arrays. Proof-of-principle of the approach includes pharmacological treatment of single-cells by the model drug doxorubicin. The herein presented strategy for single-cell array fabrication can constitute a first step toward an innovative and environmentally friendly generation of aqueous-based inkjet-printed cellular devices.
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Affiliation(s)
- Vittorio Ferrara
- Dipartimento di Scienze Chimiche, Università di Catania, Viale A. Doria 6, 95125 Catania, Italy
| | - Giovanni Zito
- Dipartimento di Promozione della Salute, Materno-Infantile, Medicina Interna e Specialistica di Eccellenza "G. D'Alessandro" (ProMISE), Sezione di Malattie Endocrine, del Ricambio e della Nutrizione, Università di Palermo, Piazza delle Cliniche 2, 90127 Palermo, Sicilia, Italy
| | - Giuseppe Arrabito
- Dipartimento di Fisica e Chimica-Emilio Segrè, Università di Palermo, Viale delle Scienze, 90128 Palermo, Italy
| | - Sebastiano Cataldo
- Dipartimento di Fisica e Chimica-Emilio Segrè, Università di Palermo, Viale delle Scienze, 90128 Palermo, Italy
| | - Michelangelo Scopelliti
- Dipartimento di Fisica e Chimica-Emilio Segrè, Università di Palermo, Viale delle Scienze, 90128 Palermo, Italy
| | - Carla Giordano
- Dipartimento di Promozione della Salute, Materno-Infantile, Medicina Interna e Specialistica di Eccellenza "G. D'Alessandro" (ProMISE), Sezione di Malattie Endocrine, del Ricambio e della Nutrizione, Università di Palermo, Piazza delle Cliniche 2, 90127 Palermo, Sicilia, Italy
| | - Valeria Vetri
- Dipartimento di Fisica e Chimica-Emilio Segrè, Università di Palermo, Viale delle Scienze, 90128 Palermo, Italy
| | - Bruno Pignataro
- Dipartimento di Fisica e Chimica-Emilio Segrè, Università di Palermo, Viale delle Scienze, 90128 Palermo, Italy
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Arrabito G, Ferrara V, Ottaviani A, Cavaleri F, Cubisino S, Cancemi P, Ho YP, Knudsen BR, Hede MS, Pellerito C, Desideri A, Feo S, Pignataro B. Imbibition of Femtoliter-Scale DNA-Rich Aqueous Droplets into Porous Nylon Substrates by Molecular Printing. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:17156-17165. [PMID: 31790261 DOI: 10.1021/acs.langmuir.9b02893] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This work presents the first reported imbibition mechanism of femtoliter (fL)-scale droplets produced by microchannel cantilever spotting (μCS) of DNA molecular inks into porous substrates (hydrophilic nylon). Differently from macroscopic or picoliter droplets, the downscaling to the fL-size leads to an imbibition process controlled by the subtle interplay of evaporation, spreading, viscosity, and capillarity, with gravitational forces being quasi-negligible. In particular, the minimization of droplet evaporation, surface tension, and viscosity allows for a reproducible droplet imbibition process. The dwell time on the nylon surface permits further tuning of the droplet lateral size, in accord with liquid ink diffusion mechanisms. The functionality of the printed DNA molecules is demonstrated at different imbibed oligonucleotide concentrations by hybridization with a fluorolabeled complementary sequence, resulting in a homogeneous coverage of DNA within the imbibed droplet. This study represents a first step toward the μCS-enabled fabrication of DNA-based biosensors and microarrays into porous substrates.
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Affiliation(s)
- G Arrabito
- Department of Physics and Chemistry "Emilio Segrè" , University of Palermo , Building 17, V.le delle Scienze , Palermo 90128 , Italy
| | - V Ferrara
- Department of Chemical Sciences , University of Catania , Viale Andrea Doria 6 , Catania 95125 , Italy
| | - A Ottaviani
- Department of Biology , University of Rome Tor Vergata , Via della Ricerca Scientifica , Rome 00133 , Italy
| | - F Cavaleri
- Department of Physics and Chemistry "Emilio Segrè" , University of Palermo , Building 17, V.le delle Scienze , Palermo 90128 , Italy
| | - S Cubisino
- Department of Physics and Chemistry "Emilio Segrè" , University of Palermo , Building 17, V.le delle Scienze , Palermo 90128 , Italy
| | - P Cancemi
- Department of Biological Chemical and Pharmaceutical Sciences and Technologies , University of Palermo , Building 16, V.le delle Scienze , Palermo 90128 , Italy
| | - Y P Ho
- Department of Biomedical Engineering , The Chinese University of Hong Kong , Hong Kong SAR , China
- Centre for Novel Biomaterials , The Chinese University of Hong Kong , Hong Kong SAR , China
| | - B R Knudsen
- Department of Molecular Biology and Genetics , Aarhus University , C.F. Møllers Allé 3 , Aarhus C 8000 , Denmark
- iNANO , Aarhus University , Gustav Wieds Vej 14 , Aarhus 8000 , Denmark
| | - M S Hede
- VPCIR.COM , CF. Møllers Alle 3 , Aarhus C 800 , Denmark
| | - C Pellerito
- Department of Physics and Chemistry "Emilio Segrè" , University of Palermo , Building 17, V.le delle Scienze , Palermo 90128 , Italy
| | - A Desideri
- Department of Biology , University of Rome Tor Vergata , Via della Ricerca Scientifica , Rome 00133 , Italy
| | - S Feo
- Department of Biological Chemical and Pharmaceutical Sciences and Technologies , University of Palermo , Building 16, V.le delle Scienze , Palermo 90128 , Italy
| | - B Pignataro
- Department of Physics and Chemistry "Emilio Segrè" , University of Palermo , Building 17, V.le delle Scienze , Palermo 90128 , Italy
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