DNA-Functionalized Plasmonic Nanomaterials for Optical Biosensing

Plasmonic nanomaterials, especially Au and Ag nanomaterials, have shown attractive physicochemical properties, such as easy functionalization and tunable optical bands. The development of this active subfield paves the way to the fascinating biosensing platforms. In recent years, plasmonic nanomaterials-based sensors have been extensively investigated because they are useful for genetic diseases, biological processes, devices, and cell imaging. In this account, a brief introduction of the development of optical biosensors based on DNA-functionalized plasmonic nanomaterials is presented. Then the common strategies for the application of the optical sensors are summarized, including colorimetry, fluorescence, localized surface plasmon resonance, and surface-enhanced resonance scattering detection. The focus is on the fundamental aspect of detection methods, and then a few examples of each method are highlighted. Finally, the opportunities and challenges for the plasmonic nanomaterials-based biosensing are discussed with the development of modern technologies.

Enhanced in vitro cytotoxicity and cellular uptake of DNA bases functionalized gold nanoparticles in HeLa cell lines

DNA base functionalized AuNPs are internalized to a greater extent with high cellular uptake and enhanced cytotoxicity in HeLa cells.

DNA dangling-end-induced colloidal stabilization of gold nanoparticles for colorimetric single-nucleotide polymorphism genotyping

A single-nucleotide polymorphism (SNP) detection method was developed by combining single-base primer extension and salt-induced aggregation of gold nanoparticles densely functionalized with double-stranded DNA (dsDNA-AuNP). The dsDNA-AuNPs undergo rapid aggregation in a medium of high ionic strength, whereas particles having a single-base protrusion at the outermost surface disperse stably, allowing detection of a single-base difference in length by color changes. When SNP typing primers are used as analytes to hybridize to the single-stranded DNA on the AuNP surface, the resulting dsDNA-AuNP works as a visual indicator of single-base extension. A set of four extension reaction mixtures is prepared using each of ddNTPs and subsequently subjected to the aggregation assay. Three mixtures involving ddNTP that is not complementary to the SNP site in the target produce the aggregates that exhibit a purple color. In contrast, one mixture with the complementary ddNTP generates the single-base protrusion and appears red. This method could potentially be used in clinical diagnostics for personalized medicine.

A Simple and Sensitive Colorimetric Detection of Silver Ions Based on Cationic Polymer-Directed AuNPs Aggregation

This paper describes a simple and sensitive colorimetric sensor employing single-stranded DNA (ssDNA) ligand, cationic polymer, and gold nanoparticles (AuNPs) to detect silver ions. The positively charged polymer can electrostatically interact with ssDNA and destroy the charge balance leading to induction of AuNP aggregation. Silver ions (Ag+) can bind to cytosine (C)-rich nucleic acids to form the C-Ag+-C hair-pin structure, which can prevent its interaction with polymers. The resulting cationic polymer could aggregate AuNPs causing a remarkable change in colour. The concentration of Ag+ can be determined visually. This sensing platform exhibits high sensitivity and selectivity towards Ag+ versus other metal ions, with a detection limit of 48.6 nM. The assay did not require any labelling or modifying steps. This method is simple, effective, and convenient and can in principle be used to detect other metal ions or small molecules.

Silica-modified oligonucleotide-gold nanoparticle conjugate enables closed-tube colorimetric polymerase chain reaction

A facile silica coating significantly enhances the thermal stability and polymerase chain reaction (PCR) compatibility of oligonucleotide-gold nanoparticle conjugates, thus enabling colorimetric detection of PCR results in a closed-tube format. This method is specific, sensitive, and generally applicable. Its simplicity, visual readout, and carryover contamination-free features hold promise for point-of-care or on-site DNA testing.

Blue-to-red colorimetric sensing strategy for Hg²⁺ and Ag⁺ via redox-regulated surface chemistry of gold nanoparticles

Here we report a "blue-to-red" colorimetric method for determination of mercury ions (Hg²⁺) and silver ions (Ag⁺) based on stabilization of gold nanoparticles (AuNPs) by redox formed metal coating in the presence of ascorbic acid (AA). AuNPs were first stabilized by Tween 20 in phosphate buffer solution with high ionic strength. In a target ion-free system, the addition of N-acetyl-L-cysteine resulted in the aggregation of Tween 20 stabilized AuNPs for mercapto ligand self-assembled on the surface of AuNPs, which induced the AuNPs to be unstable. This would lead to a color change from red to blue. By contrast, in an aqueous solution with Hg²⁺ or Ag⁺, the ions could be reduced with the aid of AA to form Hg-Au alloy or Ag coating on the surface of AuNPs. This metal coating blocked mercapto ligand assembly and AuNPs kept monodispersed after addition of N-acetyl-L-cysteine, exhibiting a red color. Therefore, taking advantage of this mechanism, a "blue-to-red" colorimetric sensing strategy could be established for Hg²⁺ and Ag⁺ detection. Compare with the commonly reported aggregation-based method ('red-to-blue'), the color change from blue to red seems more eye-sensitive, especial in low concentration of target. Moreover, selective analysis of Hg²⁺ and Ag⁺ was simply achieved by the redox nature of target ions and the application of classic ion masking agents, avoiding the design and selection of ion chelating moieties and complicated gold surface modification procedure. This method could selectively detect Hg²⁺ and Ag⁺ as low as 5 nM and 10 nM in pure water with a linear range of 5 × 10⁻⁷ to 1 × 10⁻⁵ M for Hg²⁺ and 1 × 10⁻⁶ to 8 × 10⁻⁶ M for Ag⁺, respectively. It was successfully applied to determination of Hg²⁺ and Ag⁺ in tap water and drinking water.

Ultrahighly sensitive homogeneous detection of DNA and microRNA by using single-silver-nanoparticle counting

DNA and RNA analysis is of high importance for clinical diagnoses, forensic analysis, and basic studies in the biological and biomedical fields. In this paper, we report the ultrahighly sensitive homogeneous detection of DNA and microRNA by using a novel single-silver-nanoparticle counting (SSNPC) technique. The principle of SSNPC is based on the photon-burst counting of single silver nanoparticles (Ag NPs) in a highly focused laser beam (about 0.5 fL detection volume) due to Brownian motion and the strong resonance Rayleigh scattering of single Ag NPs. We first investigated the performance of the SSNPC system and then developed an ultrasensitive homogeneous detection method for DNA and microRNA based on this single-nanoparticle technique. Sandwich nucleic acid hybridization models were utilized in the assays. In the hybridization process, when two Ag-NP-oligonucleotide conjugates were mixed in a sample containing DNA (or microRNA) targets, the binding of the targets caused the Ag NPs to form dimers (or oligomers), which led to a reduction in the photon-burst counts. The SSNPC method was used to measure the change in the photon-burst counts. The relationship between the change of the photon-burst counts and the target concentration showed a good linearity. This method was used for the assay of sequence-specific DNA fragments and microRNAs. The detection limits were at about the 1 fM level, which is 2-5 orders of magnitude more sensitive than current homogeneous methods.

Bioinspired colorimetric detection of calcium(II) ions in serum using calsequestrin-functionalized gold nanoparticles

Seeing is sensing: Calsequestrin (CSQ) functionalized gold nanoparticles undergo calcium-dependent CSQ polymerization, which results in a clear color change (see picture) together with precipitation. The sensing system is specific for Ca(2+) ions and the differences between normal and disease-associated abnormal (hypercalcemia) Ca(2+) ion levels in serum can be distinguished with the naked eye.

Quantitative enhanced Raman scattering of labeled DNA from gold and silver nanoparticles

Surface-enhanced resonance Raman scattering (SERRS) from silver nanoparticles using 514.5-nm excitation has been shown to offer huge potential for applications in highly sensitive multiplexed DNA assays. If the technique is to be applied to real biological samples and integrated with other methods, then the use of gold nanoparticles and longer wavelengths of excitation are desirable. The data presented here demonstrate that dye-labeled oligonucleotide sequences can be directly detected by SERRS using gold nanoparticles in a quantitative manner for the first time. The performance of gold and silver nanoparticles as SERRS substrates was assessed using 514.5-, 632.8-, and 785-nm excitation and a range of 13 commercially available dye-labeled oligonucleotides. The quantitative response allowed the limit of detection to be determined for each case and demonstrates that the technique is highly effective, sensitive, and versatile. The possibility of excitation at multiple wavelengths further enhances the multiplexing potential of the technique. The importance of effectively combining the optical properties of the nanoparticle and the dye label is demonstrated. For example, at 632.8-nm excitation, the dye BODIPY TR-X and gold nanoparticles make a strong SERRS combination with very little background fluorescence. This study allows the choice of nanoparticle and dye label for particular experimental setups, and significantly expands the applicability of enhanced Raman scattering for use in many disciplines.

Avidin Decorated Core–Shell Nanoparticles for Biorecognition Studies by Elastic Light Scattering

In this paper, a straightforward method based on elastic light scattering is shown to provide a sensitive and reliable tool for the quantitative determination of protein-ligand interactions that occur at the surface of suitably designed core-shell nanoparticles. The assay makes use of monodisperse nanocolloids that have minimal optical contrast with the aqueous environment. By properly coating the particles with avidin and oligo(ethylene glycol)-based amphiphiles, we developed a hybrid system that combines the availability of standard ligands with the necessary bioinvisibility towards the accidental adsorption of nonspecific macromolecules. This probe was employed to detect interactions between different kinds of biotinylated proteins, and it revealed high specificity and affinities in the low nanomolar range. In particular, we obtained an efficient avidin anchorage of biotinylated protein A on the surface of the nanoparticles, which we exploited as a functional probe for the rapid, quantitative, picomolar detection of human IgG antibodies. Overall, these light-scattering-based nanosensors appear as a simple and highly informative tool for proteomics studies.