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Wagenknecht H. Remote Photodamaging of DNA by Photoinduced Energy Transport. Chembiochem 2022; 23:e202100265. [PMID: 34569126 PMCID: PMC9292490 DOI: 10.1002/cbic.202100265] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 09/14/2021] [Indexed: 12/11/2022]
Abstract
Local DNA photodamaging by light is well-studied and leads to a number of structurally identified direct damage, in particular cyclobutane pyrimidine dimers, and indirect oxidatively generated damage, such as 8-oxo-7,8-hydroxyguanine. Similar damages have now been found at remote sites, at least more than 105 Å (30 base pairs) away from the site of photoexcitation. In contrast to the established mechanisms of local DNA photodamaging, the processes of remote photodamage are only partially understood. Known pathways include those to remote oxidatively generated DNA photodamages, which were elucidated by studying electron hole transport through the DNA about 20 years ago. Recent studies with DNA photosensitizers and mechanistic proposals on photoinduced DNA-mediated energy transport are summarized in this minireview. These new mechanisms to a new type of remote DNA photodamaging provide an important extension to our general understanding to light-induced DNA damage and their mutations.
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Affiliation(s)
- Hans‐Achim Wagenknecht
- Institute of Organic ChemistryKarlsruhe Institute of Technology (KIT)Fritz-Haber-Weg 676131KarlsruheGermany
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Didier D, Reiners F. Uncommon Four-Membered Building Blocks - Cyclobutenes, Azetines and Thietes. CHEM REC 2021; 21:1144-1160. [PMID: 33734571 DOI: 10.1002/tcr.202100011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 03/02/2021] [Accepted: 03/03/2021] [Indexed: 12/15/2022]
Abstract
Strained ring systems have gained considerable importance over the last few years for their implication in natural product syntheses or in drug discovery programs. We present herein a recollection of our work on the construction and functionalization of unsaturated four-membered carbo- and heterocycles in the context of the literature, as well as their applications in further reactions.
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Affiliation(s)
- Dorian Didier
- Department of Chemistry, Ludwig-Maximilians Universität, Butenandtstraße 5-13, 81377, Munich, Germany
| | - Felix Reiners
- Department of Chemistry, Ludwig-Maximilians Universität, Butenandtstraße 5-13, 81377, Munich, Germany
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Conti I, Martínez-Fernández L, Esposito L, Hofinger S, Nenov A, Garavelli M, Improta R. Multiple Electronic and Structural Factors Control Cyclobutane Pyrimidine Dimer and 6-4 Thymine-Thymine Photodimerization in a DNA Duplex. Chemistry 2017; 23:15177-15188. [PMID: 28809462 DOI: 10.1002/chem.201703237] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Indexed: 11/09/2022]
Abstract
The T-T photodimerization paths leading to the formation of cyclobutane pyrimidine dimer (CPD) and 6-4 pyrimidine pyrimidone (64-PP), the two main DNA photolesions, have been resolved for a T-T step in a DNA duplex by two complementary state-of-the-art quantum mechanical approaches: QM(CASPT2//CASSCF)/MM and TD-DFT/PCM. Based on the analysis of several different representative structures, we define a new-ensemble of cooperating geometrical and electronic factors (besides the distance between the reacting bonds) ruling T-T photodimerization in DNA. CPD is formed by a barrierless path on an exciton state delocalized over the two bases. Large interbase stacking and shift values, together with a small pseudorotation phase angle for T at the 3'-end, favor this reaction. The oxetane intermediate, leading to a 64-PP adduct, is formed on a singlet T→T charge-transfer state and is favored by a large interbase angle and slide values. A small energy barrier (<0.3 eV) is associated to this path, likely contributing to the smaller quantum yield observed for this process. Eventually, a clear directionality is always shown by the electronic excitation characterizing the singlet photoactive state driving the photodimerization process: an exciton that is more localized on T3 and a 5'-T→3'-T charge transfer for CPD and oxetane formation, respectively, thus calling for specific electronic constraints.
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Affiliation(s)
- Irene Conti
- Dipartimento di Chimica Industriale "T. Montanari", Università di Bologna, Viale Risorgimento 4, 40136, Bologna, Italy
| | | | - Luciana Esposito
- Istituto di Biostrutture e Bioimmagini, CNR, Via Mezzocannone 16, 80134, Napoli, Italy
| | - Siegfried Hofinger
- TU Wien, Zentraler Informatikdienst, Wiedner Hauptstrasse 8-10, 1040, Wien, Austria.,Department of Physics, Michigan Technological University, 1400 Townsend Drive, Houghton, MI, 49331-1295, USA
| | - Artur Nenov
- Dipartimento di Chimica Industriale "T. Montanari", Università di Bologna, Viale Risorgimento 4, 40136, Bologna, Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "T. Montanari", Università di Bologna, Viale Risorgimento 4, 40136, Bologna, Italy
| | - Roberto Improta
- Istituto di Biostrutture e Bioimmagini, CNR, Via Mezzocannone 16, 80134, Napoli, Italy.,LIDYL, CEA, CNRS, Université Paris, Saclay, 91191, Gif-sur-Yvette, France
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Bignon E, Gattuso H, Morell C, Dumont E, Monari A. DNA Photosensitization by an “Insider”: Photophysics and Triplet Energy Transfer of 5‐Methyl‐2‐pyrimidone Deoxyribonucleoside. Chemistry 2015; 21:11509-16. [DOI: 10.1002/chem.201501212] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Indexed: 12/13/2022]
Affiliation(s)
- Emmanuelle Bignon
- Laboratoire de Chimie, UMR 5182, CNRS Ecole Normale Supérieure de Lyon, Lyon (France)
- Institut des Sciences Analytiques, UMR 5280, Université de Lyon1 (UCBL) CNRS, Lyon (France)
| | - Hugo Gattuso
- Université de Lorraine, Nancy Theory‐Simulation‐Modeling, SRSMC, Vandoeuvre‐les‐Nancy (France)
- CNRS, Nancy Theory‐Simulation‐Modeling, SRSMC, Vandoeuvre‐les‐Nancy (France)
| | - Christophe Morell
- Institut des Sciences Analytiques, UMR 5280, Université de Lyon1 (UCBL) CNRS, Lyon (France)
| | - Elise Dumont
- Laboratoire de Chimie, UMR 5182, CNRS Ecole Normale Supérieure de Lyon, Lyon (France)
| | - Antonio Monari
- Université de Lorraine, Nancy Theory‐Simulation‐Modeling, SRSMC, Vandoeuvre‐les‐Nancy (France)
- CNRS, Nancy Theory‐Simulation‐Modeling, SRSMC, Vandoeuvre‐les‐Nancy (France)
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Bucher DB, Schlueter A, Carell T, Zinth W. Watson-Crick Base Pairing Controls Excited-State Decay in Natural DNA. Angew Chem Int Ed Engl 2014; 53:11366-9. [DOI: 10.1002/anie.201406286] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 07/22/2014] [Indexed: 11/11/2022]
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Bucher DB, Schlueter A, Carell T, Zinth W. In natürlicher DNA wird der Zerfall des angeregten Zustands durch Watson-Crick-Basenpaarung bestimmt. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201406286] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Wagenknecht HA. Unraveling the pathways to UVA-induced DNA photodamage: (6-4) photoproduct as a potential "Trojan Horse". Chemphyschem 2013; 14:3197-8. [PMID: 23897754 DOI: 10.1002/cphc.201300598] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Indexed: 11/12/2022]
Abstract
Double jeopardy: The Pyo chromophore in the (6-4) photoproduct is able to induce a secondary photoproduct in DNA by excitation with UVA light.
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Affiliation(s)
- Hans-Achim Wagenknecht
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe (Germany), Fax: (+49) 721 608 47486.
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Vendrell-Criado V, Rodríguez-Muñiz GM, Cuquerella MC, Lhiaubet-Vallet V, Miranda MA. Photosensitization of DNA by 5-Methyl-2-Pyrimidone Deoxyribonucleoside: (6-4) Photoproduct as a Possible Trojan Horse. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201302176] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Vendrell-Criado V, Rodríguez-Muñiz GM, Cuquerella MC, Lhiaubet-Vallet V, Miranda MA. Photosensitization of DNA by 5-methyl-2-pyrimidone deoxyribonucleoside: (6-4) photoproduct as a possible Trojan horse. Angew Chem Int Ed Engl 2013; 52:6476-9. [PMID: 23657994 DOI: 10.1002/anie.201302176] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2013] [Indexed: 11/11/2022]
Affiliation(s)
- Victoria Vendrell-Criado
- Instituto de Tecnología Química UPV-CSIC, Universitat Politècnica de València, Consejo Superior de Investigaciones Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
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Nenov A, de Vivie-Riedle R. Conical intersection seams in polyenes derived from their chemical composition. J Chem Phys 2012; 137:074101. [DOI: 10.1063/1.4745183] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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