1
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Hohenschutz M, Bauduin P, Lopez CG, Förster B, Richtering W. Superchaotropic Nano-ion Binding as a Gelation Motif in Cellulose Ether Solutions. Angew Chem Int Ed Engl 2023; 62:e202210208. [PMID: 36346946 PMCID: PMC10107358 DOI: 10.1002/anie.202210208] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 10/19/2022] [Accepted: 11/08/2022] [Indexed: 11/10/2022]
Abstract
Nanometer-sized anions (nano-ions) like polyoxometalates and boron clusters exhibit so-called superchaotropic behavior, which describes their strong binding to hydrated non-ionic matter in water. We show here that nano-ions, at millimolar concentrations, dramatically enhance the viscosity and induce gelation of aqueous solutions of non-ionic cellulose ethers (CEs), a class of widely utilized polymers known for their thickening and gel-forming ability. These phenomena arise from an interplay of attractive forces and repulsive electrostatic forces between CE-chains upon nano-ion binding. The attractive forces manifest themselves as aggregation of CE-chains into a physically crosslinked polymer network (gel). In turn, the electrostatic repulsions hamper the viscosity increase and gelation. Superchaotropic nano-ion binding emerges as a novel and general physical crosslinking motif for CE-solutions and exceeds by far the conventional thickening effects of classical salts and ionic surfactants.
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Affiliation(s)
- Max Hohenschutz
- RWTH Aachen University, Institute of Physical Chemistry, Landoltweg 2, 52074, Aachen, Germany
| | - Pierre Bauduin
- Institut de Chimie Séparative de Marcoule, ICSM, CEA, CNRS, ENSCM, Univ Montpellier, Marcoule, France
| | - Carlos G Lopez
- RWTH Aachen University, Institute of Physical Chemistry, Landoltweg 2, 52074, Aachen, Germany
| | - Beate Förster
- Forschungszentrum Jülich GmbH, Ernst Ruska-Centrum für Mikroskopie und Spektroskopie mit Elektronen (ER-C-1), 52425, Jülich, Germany
| | - Walter Richtering
- RWTH Aachen University, Institute of Physical Chemistry, Landoltweg 2, 52074, Aachen, Germany.,DWI-Leibniz-Institute for Interactive Materials e.V., RWTH-Aachen University, Forckenbeckstraße 50, 52074, Aachen, Germany
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2
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Neitz H, Bessi I, Kachler V, Michel M, Höbartner C. Tailored Tolane-Perfluorotolane Assembly as Supramolecular Base Pair Replacement in DNA. Angew Chem Int Ed Engl 2023; 62:e202214456. [PMID: 36344446 PMCID: PMC10107946 DOI: 10.1002/anie.202214456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Indexed: 11/09/2022]
Abstract
Arene-fluoroarene interactions offer outstanding possibilities for engineering of supramolecular systems, including nucleic acids. Here, we implement the tolane-perfluorotolane interaction as base pair replacement in DNA. Tolane (THH) and perfluorotolane (TFF) moieties were connected to acyclic backbone units, comprising glycol nucleic acid (GNA) or butyl nucleic acid (BuNA) building blocks, that were incorporated via phosphoramidite chemistry at opposite positions in a DNA duplex. Thermodynamic analyses by UV thermal melting revealed a compelling stabilization by THH/TFF heteropairs only when connected to the BuNA backbone, but not with the shorter GNA linker. Detailed NMR studies confirmed the preference of the BuNA backbone for enhanced polar π-stacking. This work defines how orthogonal supramolecular interactions can be tailored by small constitutional changes in the DNA backbone, and it inspires future studies of arene-fluoroarene-programmed assembly of DNA.
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Affiliation(s)
- Hermann Neitz
- Institute of Organic ChemistryUniversity of WürzburgAm Hubland97074WürzburgGermany
| | - Irene Bessi
- Institute of Organic ChemistryUniversity of WürzburgAm Hubland97074WürzburgGermany
| | - Valentin Kachler
- Institute of Organic ChemistryUniversity of WürzburgAm Hubland97074WürzburgGermany
| | - Manuela Michel
- Institute of Organic ChemistryUniversity of WürzburgAm Hubland97074WürzburgGermany
| | - Claudia Höbartner
- Institute of Organic ChemistryUniversity of WürzburgAm Hubland97074WürzburgGermany
- Center for Nanosystems Chemistry (CNC)University of WürzburgTheodor-Boveri-Weg97074WürzburgGermany
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3
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Molecular Dynamics and TD‐DFT Study of the Ternary Complexes of Cucurbit[8]uril with Aromatic Amino Acids and Auxiliary Ligands. ChemistrySelect 2022. [DOI: 10.1002/slct.202201988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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4
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Zhai C, Isaacs L. New Synthetic Route to Water‐Soluble Prism[5]arene Hosts and Their Molecular Recognition Properties**. Chemistry 2022; 28:e202201743. [DOI: 10.1002/chem.202201743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Indexed: 11/10/2022]
Affiliation(s)
- Canjia Zhai
- Department of Chemistry and Biochemistry University of Maryland College Park 20742 Maryland USA
| | - Lyle Isaacs
- Department of Chemistry and Biochemistry University of Maryland College Park 20742 Maryland USA
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5
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Pérez‐Márquez LA, Perretti MD, García‐Rodríguez R, Lahoz F, Carrillo R. A Fluorescent Cage for Supramolecular Sensing of 3‐Nitrotyrosine in Human Blood Serum. Angew Chem Int Ed Engl 2022; 61:e202205403. [PMID: 35511212 PMCID: PMC9401051 DOI: 10.1002/anie.202205403] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Indexed: 12/26/2022]
Abstract
3‐Nitrotyrosine (NT) is generated by the action of peroxynitrite and other reactive nitrogen species (RNS), and as a consequence it is accumulated in inflammation‐associated conditions. This is particularly relevant in kidney disease, where NT concentration in blood is considerably high. Therefore, NT is a crucial biomarker of renal damage, although it has been underestimated in clinical diagnosis due to the lack of an appropriate sensing method. Herein we report the first fluorescent supramolecular sensor for such a relevant compound: Fluorescence by rotational restriction of tetraphenylethenes (TPE) in a covalent cage is selectively quenched in human blood serum by 3‐nitrotyrosine (NT) that binds to the cage with high affinity, allowing a limit of detection within the reported physiological concentrations of NT in chronic kidney disease.
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Affiliation(s)
- Lidia A. Pérez‐Márquez
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC) Avda. Astrofísico Fco. Sánchez 3 38206 La Laguna Spain
| | - Marcelle D. Perretti
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC) Avda. Astrofísico Fco. Sánchez 3 38206 La Laguna Spain
| | - Raúl García‐Rodríguez
- GIR MIOMeT-IU Cinquima-Química Inorgánica Facultad de Ciencias Campus Miguel Delibes Universidad de Valladolid 47011 Valladolid Spain
| | - Fernando Lahoz
- Departamento de Física, IUdEA Universidad de La Laguna 38200 San Cristóbal de La Laguna Tenerife Spain
| | - Romen Carrillo
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC) Avda. Astrofísico Fco. Sánchez 3 38206 La Laguna Spain
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6
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Grimm LM, Spicher S, Tkachenko B, Schreiner PR, Grimme S, Biedermann F. The Role of Packing, Dispersion, Electrostatics, and Solvation in High-Affinity Complexes of Cucurbit[n]urils with Uncharged Polar Guests. Chemistry 2022; 28:e202200529. [PMID: 35612260 PMCID: PMC9401061 DOI: 10.1002/chem.202200529] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Indexed: 12/21/2022]
Abstract
The rationalization of non‐covalent binding trends is both of fundamental interest and provides new design concepts for biomimetic molecular systems. Cucurbit[n]urils (CBn) are known for a long time as the strongest synthetic binders for a wide range of (bio)organic compounds in water. However, their host‐guest binding mechanism remains ambiguous despite their symmetric and simple macrocyclic structure and the wealth of literature reports. We herein report experimental thermodynamic binding parameters (ΔG, ΔH, TΔS) for CB7 and CB8 with a set of hydroxylated adamantanes, di‐, and triamantanes as uncharged, rigid, and spherical/ellipsoidal guests. Binding geometries and binding energy decomposition were obtained from high‐level theory computations. This study reveals that neither London dispersion interactions, nor electronic energies or entropic factors are decisive, selectivity‐controlling factors for CBn complexes. In contrast, peculiar host‐related solvation effects were identified as the major factor for rationalizing the unique behavior and record‐affinity characteristics of cucurbit[n]urils.
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Affiliation(s)
- Laura M Grimm
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Sebastian Spicher
- Mulliken Center for Theoretical Chemistry, Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Boryslav Tkachenko
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4, 53115, Bonn, Germany
| | - Frank Biedermann
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
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7
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Quan M, Pang XY, Jiang W. Circular Dichroism Based Chirality Sensing with Supramolecular Host-Guest Chemistry. Angew Chem Int Ed Engl 2022; 61:e202201258. [PMID: 35315199 DOI: 10.1002/anie.202201258] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Indexed: 12/12/2022]
Abstract
Optical methods are promising to address the ever-increasing demands for chirality analysis in drug discovery and related fields because they are amenable to high-throughput screening. Circular dichroism-based chiroptical sensing using host-guest chemistry is especially appealing due to the fast equilibrium kinetics, wide substrate scope, and potential for sustainable development. In this Minireview, we give an overview on this emerging field. General aspects of molecular recognition and chirality transfer are analyzed. Chirality sensors are discussed by dividing them into three classes according to their structural features. Applications of these chirality sensors for chirality analysis of the products of asymmetric reactions and for the real-time monitoring of reaction kinetics are demonstrated with selected examples. Moreover, challenges and research directions in this field are also highlighted.
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Affiliation(s)
- Mao Quan
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry, Southern University of Science and Technology (SUSTech), Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Xin-Yu Pang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry, Southern University of Science and Technology (SUSTech), Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Wei Jiang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry, Southern University of Science and Technology (SUSTech), Xueyuan Blvd 1088, Shenzhen, 518055, China
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8
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Pérez-Márquez LA, Perretti MD, García-Rodríguez R, Lahoz F, Carrillo R. A Fluorescent Cage for Supramolecular Sensing of 3‐Nitrotyrosine in Human Blood Serum. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202205403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Lidia Ana Pérez-Márquez
- Instituto de Productos Naturales y Agrobiología: Instituto de Productos Naturales y Agrobiologia Molecular Sciences SPAIN
| | - Marcelle Dayana Perretti
- Instituto de Productos Naturales y Agrobiología: Instituto de Productos Naturales y Agrobiologia Molecular Sciences SPAIN
| | | | - Fernando Lahoz
- Universidad de La Laguna Facultad de Física: Universidad de La Laguna Facultad de Fisica Departamento de Física SPAIN
| | - Romen Carrillo
- Instituto de Productos Naturales y Agrobiología: Instituto de Productos Naturales y Agrobiologia Ciencias Moleculares Avda. Astrofísico Francisco Sánchez 3 38206 La Laguna SPAIN
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9
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Quan M, Pang X, Jiang W. Circular Dichroism Based Chirality Sensing with Supramolecular Host–Guest Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Mao Quan
- Shenzhen Grubbs Institute Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry Southern University of Science and Technology (SUSTech) Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Xin‐Yu Pang
- Shenzhen Grubbs Institute Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry Southern University of Science and Technology (SUSTech) Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Wei Jiang
- Shenzhen Grubbs Institute Guangdong Provincial Key Laboratory of Catalysis and Department of Chemistry Southern University of Science and Technology (SUSTech) Xueyuan Blvd 1088 Shenzhen 518055 China
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10
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Kubik S. When Molecules Meet in Water-Recent Contributions of Supramolecular Chemistry to the Understanding of Molecular Recognition Processes in Water. Chemistry 2022; 11:e202200028. [PMID: 35373466 PMCID: PMC8977507 DOI: 10.1002/open.202200028] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 03/17/2022] [Indexed: 12/19/2022]
Abstract
Molecular recognition processes in water differ from those in organic solvents in that they are mediated to a much greater extent by solvent effects. The hydrophobic effect, for example, causes molecules that only weakly interact in organic solvents to stay together in water. Such water‐mediated interactions can be very efficient as demonstrated by many of the synthetic receptors discussed in this review, some of which have substrate affinities matching or even surpassing those of natural binders. However, in spite of considerable success in designing such receptors, not all factors determining their binding properties in water are fully understood. Existing concepts still provide plausible explanations why the reorganization of water molecules often causes receptor‐substrate interactions in water to be strongly exothermic rather than entropically favored as predicted by the classical view of the hydrophobic effect.
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Affiliation(s)
- Stefan Kubik
- Technische Universität Kaiserslautern, Fachbereich Chemie - Organische Chemie, Erwin-Schrödinger-Straße 54, 67663, Kaiserslautern, Germany
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11
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DiMaggio D, Brockett A, Shuster M, Murkli S, Zhai C, King D, O'Dowd B, Cheng M, Brady K, Briken V, Roesch MR, Isaacs L. Anthracene Walled Acyclic CB[n] Receptors: In Vitro and In Vivo Binding Properties Toward Drugs of Abuse. ChemMedChem 2022; 17:e202200046. [PMID: 35238177 DOI: 10.1002/cmdc.202200046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 03/01/2022] [Indexed: 11/07/2022]
Abstract
We report studies of the interaction of six acyclic CB[n]-type receptors toward a panel of drugs of abuse by a combination of isothermal titration calorimetry and 1H NMR spectroscopy. Anthracene walled acyclic CB[n] host (M3) displays highest binding affinity toward methamphetamine (Kd = 15 nM) and fentanyl (Kd = 4 nM). Host M3 is well tolerated by Hep G2 and HEK 293 cells up to 100 mM according to MTS metabolic and adenylate kinase release assays. An in vivomaximum tolerated dose study with Swiss Webster mice showed no adverse effects at the highest dose studied (44.7 mg kg-1). Host M3 is not mutagenic based on the Ames fluctuation test and does not inhibit the hERG ion channel. In vivoefficacy studies showed that pretreatment of mice with M3 significantly reduces the hyperlocomotion after treatment with methamphetamine, but M3 does not function similarly when administered 30 seconds after methamphetamine.
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Affiliation(s)
- Delaney DiMaggio
- University of Maryland at College Park, Chemistry and Biochemistry, 8051 Regents Dr., 20742, College Park, UNITED STATES
| | - Adam Brockett
- University of Maryland at College Park, Psychology, UNITED STATES
| | - Michael Shuster
- University of Maryland at College Park, Cell Biology and Molecular Genetics, UNITED STATES
| | - Steven Murkli
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - Canjia Zhai
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - David King
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - Brona O'Dowd
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - Ming Cheng
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - Kimberly Brady
- University of Maryland at College Park, Chemistry and Biochemistry, UNITED STATES
| | - Volker Briken
- University of Maryland at College Park, Cell Biology and Molecular Genetics, UNITED STATES
| | - Matthew R Roesch
- University of Maryland at College Park, Psychology, UNITED STATES
| | - Lyle Isaacs
- University of Maryland, College Park, Department of Chemistry and Biochemistry, Building 091, 20742, College Park, UNITED STATES
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12
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Zhou H, Pang XY, Wang X, Yao H, Yang LP, Jiang W. Biomimetic Recognition of Quinones in Water by an Endo-Functionalized Cavity with Anthracene Sidewalls. Angew Chem Int Ed Engl 2021; 60:25981-25987. [PMID: 34569134 DOI: 10.1002/anie.202112267] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Indexed: 12/27/2022]
Abstract
Selective molecular recognition in water is the foundation of numerous biological functions but is a challenge for most synthetic hosts. We employ the concept of endo-functionalized cavity and the strategy of simultaneous construction to address this issue. The concept and the strategy were demonstrated in the construction of a biomimetic host for selectively recognizing quinones in water. The host was synthesized by joining two pieces of bent anthracene dimer through amide bond formation, affording a deep hydrophobic cavity and inward-directing hydrogen bonding sites. The host can recognize quinones over their close analogues in water, and its association affinity to p-benzoquinone is the highest among all the known hosts and is even comparable to that of the bioreceptor. The binding with an anthraquinone reaches nanomolar affinity. Shielded hydrogen bonding, C-H⋅⋅⋅π, and charge transfer interactions, and the hydrophobic effect are responsible for the high binding affinity and selectivity.
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Affiliation(s)
- Hang Zhou
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Xin-Yu Pang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Xiaoping Wang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Huan Yao
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Liu-Pan Yang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
| | - Wei Jiang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry, Southern University of Science and Technology, Xueyuan Blvd 1088, Shenzhen, 518055, China
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13
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Luo N, Ao YF, Wang DX, Wang QQ. π-Face Promoted Catalysis in Water: From Electron-deficient Molecular Cages to Single Aromatic Slides. Chem Asian J 2021; 16:3599-3603. [PMID: 34464026 DOI: 10.1002/asia.202100920] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 08/30/2021] [Indexed: 12/13/2022]
Abstract
Exploiting noncovalent π-interactions particularly emerging anion-π interactions to drive efficient catalysis is fascinating. Even with exciting progresses, can anion-π activation operate in water remains elusive. Here we report the design, synthesis and catalytic studies of a class of water-soluble electron-deficient molecular cages and relevant aromatic slide compounds. The prism-like cages contain three divided, long, cationic aromatic walls which constitute three highly electron-deficient V-shape cavities. They were efficiently synthesized in two steps from a parent triformyl cage in gram-scale. Crystal structure showed the π-walls bind to the counter bromide through strong anion-π interactions. Just 5 mol% of cages were effective in catalyzing decarboxylative Aldol reactions of aldehydes and malonic acid half thioesters in water but not in organic solvents, showing a pronounced hydrophobic amplification effect. Meantime, a series of single π-slides resembling the π-wall of the cage performed equally well, while those lacking an extended π-surface were ineffective, highlighting the essential role of electron-deficient π-face on promoting the conversion.
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Affiliation(s)
- Na Luo
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yu-Fei Ao
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - De-Xian Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qi-Qiang Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
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14
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Zhou H, Pang X, Wang X, Yao H, Yang L, Jiang W. Biomimetic Recognition of Quinones in Water by an
Endo
‐Functionalized Cavity with Anthracene Sidewalls. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202112267] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Hang Zhou
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Xin‐Yu Pang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Xiaoping Wang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Huan Yao
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Liu‐Pan Yang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Wei Jiang
- Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, and Department of Chemistry Southern University of Science and Technology Xueyuan Blvd 1088 Shenzhen 518055 China
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15
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Horin I, Shalev O, Cohen Y. Aggregation Mode, Host-Guest Chemistry in Water, and Extraction Capability of an Uncharged, Water-Soluble, Liquid Pillar[5]arene Derivative. ChemistryOpen 2021; 10:1111-1115. [PMID: 34730286 PMCID: PMC8564886 DOI: 10.1002/open.202100206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/10/2021] [Indexed: 11/05/2022] Open
Abstract
An uncharged, water-soluble per-ethylene-glycol pillar[5]arene derivative (1) was synthesized and its aggregation mode, host-guest chemistry in water and extraction ability was explored. Compound 1 is a liquid at room temperature; in water, limited self-aggregation occurred at high concentrations as deduced from diffusion NMR and dynamic light scattering. Compound 1 forms pseudo-rotaxane-like 1 : 1 host-guest complexes with 1,ω-di-substituted alkanes with association constants on the order of 103 -104 m-1 . Interestingly, NMR experiments showed that the guest location relative to the host ring system differs among the different complexes. In proof-of-concept experiments, compound 1 was shown to extract structurally related organic compounds from benzene into water with significant selectivity. Compound 1, which is a liquid at room temperature and has only limited interactions with its side arms, can, in principle, be regarded as a complement to or as a kind of type I porous liquid.
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Affiliation(s)
- Inbar Horin
- School of Chemistry, Sackler Faculty of Exact SciencesTel Aviv University Ramat Aviv69978Tel AvivIsrael
| | - Ori Shalev
- School of Chemistry, Sackler Faculty of Exact SciencesTel Aviv University Ramat Aviv69978Tel AvivIsrael
| | - Yoram Cohen
- School of Chemistry, Sackler Faculty of Exact SciencesTel Aviv University Ramat Aviv69978Tel AvivIsrael
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16
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Finnegan TJ, Gunawardana VWL, Badjić JD. Molecular Recognition of Nerve Agents and Their Organophosphorus Surrogates: Toward Supramolecular Scavengers and Catalysts. Chemistry 2021; 27:13280-13305. [PMID: 34185362 PMCID: PMC8453132 DOI: 10.1002/chem.202101532] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Indexed: 12/19/2022]
Abstract
Nerve agents are tetrahedral organophosphorus compounds (OPs) that were developed in the last century to irreversibly inhibit acetylcholinesterase (AChE) and therefore impede neurological signaling in living organisms. Exposure to OPs leads to a rapid development of symptoms from excessive salivation, nasal congestion and chest pain to convulsion and asphyxiation which if left untreated may lead to death. These potent toxins are prepared on a large scale from inexpensive staring materials, making it feasible for terrorist groups or states to use them against military and civilians. The existing antidotes provide limited protection and are difficult to apply to a large number of affected individuals. While new prophylactics are currently being developed, there is still need for therapeutics capable of both preventing and reversing the effects of OP poisoning. In this review, we describe how the science of molecular recognition can expand the pallet of tools for rapid and safe sequestration of nerve agents.
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Affiliation(s)
- Tyler J Finnegan
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, OH, USA
| | | | - Jovica D Badjić
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, OH, USA
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17
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Falaise C, Khlifi S, Bauduin P, Schmid P, Shepard W, Ivanov AA, Sokolov MN, Shestopalov MA, Abramov PA, Cordier S, Marrot J, Haouas M, Cadot E. “Host in Host” Supramolecular Core–Shell Type Systems Based on Giant Ring‐Shaped Polyoxometalates. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102507] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Clément Falaise
- Institut Lavoisier de Versailles CNRS, UVSQ, Université Paris-Saclay Versailles France
| | - Soumaya Khlifi
- Institut Lavoisier de Versailles CNRS, UVSQ, Université Paris-Saclay Versailles France
| | - Pierre Bauduin
- ICSM, CEA CNRS ENSCM Université Montpellier 34199 Marcoule France
| | - Philipp Schmid
- ICSM, CEA CNRS ENSCM Université Montpellier 34199 Marcoule France
| | - William Shepard
- Synchrotron SOLEIL L'Orme des Merisiers Saint-Aubain BP 48 91192 Gif-sur-Yvette, CEDEX France
| | - Anton A. Ivanov
- Nikolaev Institute of Inorganic Chemistry SB RAS 630090 Novosibirsk Russia
| | - Maxim N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS 630090 Novosibirsk Russia
| | | | - Pavel A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS 630090 Novosibirsk Russia
- South Ural State University, Prospekt Lenina, 76 454080 Chelyabinsk Russia
| | - Stéphane Cordier
- CNRS Institut des Sciences Chimiques de Rennes ISCR—UMR 6226 Univ Rennes 35000 Rennes France
| | - Jérôme Marrot
- Institut Lavoisier de Versailles CNRS, UVSQ, Université Paris-Saclay Versailles France
| | - Mohamed Haouas
- Institut Lavoisier de Versailles CNRS, UVSQ, Université Paris-Saclay Versailles France
| | - Emmanuel Cadot
- Institut Lavoisier de Versailles CNRS, UVSQ, Université Paris-Saclay Versailles France
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18
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Hua M, Wang S, Gong Y, Wei J, Yang Z, Sun J. Hierarchically Porous Organic Cages. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100849] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Mingming Hua
- School of Chemistry and Chemical Engineering Key Laboratory of Colloid and Interface Chemistry Ministry of Education Shandong University Jinan 250100 P. R. China
| | - Shuping Wang
- School of Chemistry and Chemical Engineering Key Laboratory of Colloid and Interface Chemistry Ministry of Education Shandong University Jinan 250100 P. R. China
| | - Yanjun Gong
- School of Chemistry and Chemical Engineering Key Laboratory of Colloid and Interface Chemistry Ministry of Education Shandong University Jinan 250100 P. R. China
| | - Jingjing Wei
- School of Chemistry and Chemical Engineering Key Laboratory of Colloid and Interface Chemistry Ministry of Education Shandong University Jinan 250100 P. R. China
| | - Zhijie Yang
- School of Chemistry and Chemical Engineering Key Laboratory of Colloid and Interface Chemistry Ministry of Education Shandong University Jinan 250100 P. R. China
| | - Jian‐Ke Sun
- MOE Key Laboratory of Cluster Science School of Chemistry and Chemical Engineering Beijing Institute of Technology Beijing P. R. China
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19
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Hua M, Wang S, Gong Y, Wei J, Yang Z, Sun JK. Hierarchically Porous Organic Cages. Angew Chem Int Ed Engl 2021; 60:12490-12497. [PMID: 33694301 DOI: 10.1002/anie.202100849] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 03/09/2021] [Indexed: 11/09/2022]
Abstract
Imparting mesopores to organic cages of an intrinsic microporous nature to build up hierarchically porous cage soft materials is a grand challenge and will reshape the property and application scope of traditional organic cage molecules. Herein, we discovered how to engineer mesopores into microporous organic cages via their host-guest interactions with long chain ionic surfactants. Equally important, the ionic head of surfactants equips the supramolecularly assembled porous structures with charge-selective uptake and release function in solution. Interestingly, such hierarchically porous organic cage can serve as a nanoreactor once trapping enzymes within the cavity, which show 5-fold enhanced activity of enzymatic catalysis when compared with the free enzymes.
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Affiliation(s)
- Mingming Hua
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, 250100, P. R. China
| | - Shuping Wang
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, 250100, P. R. China
| | - Yanjun Gong
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, 250100, P. R. China
| | - Jingjing Wei
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, 250100, P. R. China
| | - Zhijie Yang
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, 250100, P. R. China
| | - Jian-Ke Sun
- MOE Key Laboratory of Cluster Science, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, P. R. China
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20
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Falaise C, Khlifi S, Bauduin P, Schmid P, Shepard W, Ivanov AA, Sokolov MN, Shestopalov MA, Abramov PA, Cordier S, Marrot J, Haouas M, Cadot E. "Host in Host" Supramolecular Core-Shell Type Systems Based on Giant Ring-Shaped Polyoxometalates. Angew Chem Int Ed Engl 2021; 60:14146-14153. [PMID: 33724635 DOI: 10.1002/anie.202102507] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Indexed: 11/08/2022]
Abstract
Herein, we show how the chaotropic effect arising from reduced molybdate ions in acidified aqueous solution is able to amplify drastically weak supramolecular interactions. Time-resolved Small Angle X-ray Scattering (SAXS) analysis suggests that molybdenum-blue oligomeric species form huge aggregates in the presence of γ-cyclodextrin (γ-CD) which results in the fast formation of nanoscopic {Mo154 }-based host-guest species, while X-ray diffraction analysis reveals that the ending-point of the scenario results in an unprecedented three-component well-ordered core-shell-like motif. A similar arrangement was found by using preformed hexarhenium chalcogenide-type cluster [Re6 Te8 (CN)6 ]4- as exogenous guest. This seminal work brings better understanding of the self-assembly processes in general and gives new opportunities for practical applications in the design of complex multicomponent materials via the simplicity of the non-covalent chemistry.
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Affiliation(s)
- Clément Falaise
- Institut Lavoisier de Versailles, CNRS, UVSQ, Université Paris-Saclay, Versailles, France
| | - Soumaya Khlifi
- Institut Lavoisier de Versailles, CNRS, UVSQ, Université Paris-Saclay, Versailles, France
| | - Pierre Bauduin
- ICSM, CEA, CNRS, ENSCM, Université Montpellier, 34199, Marcoule, France
| | - Philipp Schmid
- ICSM, CEA, CNRS, ENSCM, Université Montpellier, 34199, Marcoule, France
| | - William Shepard
- Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubain BP 48, 91192, Gif-sur-Yvette, CEDEX, France
| | - Anton A Ivanov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Novosibirsk, Russia
| | - Maxim N Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Novosibirsk, Russia
| | | | - Pavel A Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Novosibirsk, Russia.,South Ural State University, Prospekt Lenina, 76, 454080, Chelyabinsk, Russia
| | - Stéphane Cordier
- CNRS, Institut des Sciences Chimiques de Rennes, ISCR-UMR 6226, Univ Rennes, 35000, Rennes, France
| | - Jérôme Marrot
- Institut Lavoisier de Versailles, CNRS, UVSQ, Université Paris-Saclay, Versailles, France
| | - Mohamed Haouas
- Institut Lavoisier de Versailles, CNRS, UVSQ, Université Paris-Saclay, Versailles, France
| | - Emmanuel Cadot
- Institut Lavoisier de Versailles, CNRS, UVSQ, Université Paris-Saclay, Versailles, France
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21
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Ferguson Johns HP, Harrison EE, Stingley KJ, Waters ML. Mimicking Biological Recognition: Lessons in Binding Hydrophilic Guests in Water. Chemistry 2021; 27:6620-6644. [PMID: 33048395 DOI: 10.1002/chem.202003759] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Indexed: 01/25/2023]
Abstract
Selective molecular recognition of hydrophilic guests in water plays a fundamental role in a vast number of biological processes, but synthetic mimicry of biomolecular recognition in water still proves challenging both in terms of achieving comparable affinities and selectivities. This Review highlights strategies that have been developed in the field of supramolecular chemistry to selectively and non-covalently bind three classes of biologically relevant molecules: nucleotides, carbohydrates, and amino acids. As several groups have systematically modified receptors for a specific guest, an evolutionary perspective is also provided in some cases. Trends in the most effective binding forces for each class are described, providing insight into selectivity and potential directions for future work.
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Affiliation(s)
- Hannah P Ferguson Johns
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Emily E Harrison
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Kyla J Stingley
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Marcey L Waters
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
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22
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Dong J, Davis AP. Molecular Recognition Mediated by Hydrogen Bonding in Aqueous Media. Angew Chem Int Ed Engl 2020; 60:8035-8048. [DOI: 10.1002/anie.202012315] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 10/14/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Jinqiao Dong
- School of Chemistry University of Bristol Cantock's Close Bristol BS8 1TS UK
| | - Anthony P. Davis
- School of Chemistry University of Bristol Cantock's Close Bristol BS8 1TS UK
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23
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Rajasekar P, Jose C, Sarkar M, Boomishankar R. Effective Enantioselective Recognition by Chiral Amino‐Phosphonium Salts**. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202012392] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Prabhakaran Rajasekar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Cavya Jose
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Meghamala Sarkar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Ramamoorthy Boomishankar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
- Centre for Energy Science Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
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24
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Rajasekar P, Jose C, Sarkar M, Boomishankar R. Effective Enantioselective Recognition by Chiral Amino‐Phosphonium Salts**. Angew Chem Int Ed Engl 2020; 60:4023-4027. [DOI: 10.1002/anie.202012392] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Indexed: 12/22/2022]
Affiliation(s)
- Prabhakaran Rajasekar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Cavya Jose
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Meghamala Sarkar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
| | - Ramamoorthy Boomishankar
- Department of Chemistry Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
- Centre for Energy Science Indian Institute of Science Education and Research, Pune Dr. Homi Bhabha Road Pune 411008 India
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25
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Dong J, Davis AP. Molecular Recognition Mediated by Hydrogen Bonding in Aqueous Media. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202012315] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Jinqiao Dong
- School of Chemistry University of Bristol Cantock's Close Bristol BS8 1TS UK
| | - Anthony P. Davis
- School of Chemistry University of Bristol Cantock's Close Bristol BS8 1TS UK
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26
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Hartmann D, Greb L. [Si(O 2 C 6 F 4 ) 2 ] 14 : Self-Assembly of a Giant Perfluorinated Macrocyclic Host by Low-Barrier Si-O Bond Metathesis. Angew Chem Int Ed Engl 2020; 59:22510-22513. [PMID: 32786036 PMCID: PMC7756369 DOI: 10.1002/anie.202009942] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Indexed: 11/11/2022]
Abstract
The dynamic covalent self-assembly of 14 units of bis(perfluorocatecholato)silane leads to [Si(O2 C6 F4 )2 ]14 -the first giant perfluorinated macrocycle. The oligomerization process is monitored spectroscopically, and the macrocycle analyzed by single-crystal X-ray diffraction. The molecule forms a rigid cavity that can host two o-closo-dodecacarboranes. Computations rationalize the consistent and reproducible formation of the 14mer and disclose a non-catalyzed Si-O/ Si-O σ-bond metathesis with an exceptionally low energetic barrier. For the first time, the most prevalent linker in our geosphere-SiO4 -is disposed to construct a shape-defined crystalline macromolecule.
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Affiliation(s)
- Deborah Hartmann
- Anorganisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Lutz Greb
- Anorganisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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27
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Hartmann D, Greb L. [Si(O
2
C
6
F
4
)
2
]
14
: Selbstassemblierung eines perfluorierten makrocyclischen Wirts durch Si‐O‐Bindungsmetathese mit niedriger Barriere. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202009942] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Deborah Hartmann
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Deutschland
| | - Lutz Greb
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Deutschland
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28
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Murkli S, Klemm J, King D, Zavalij PY, Isaacs L. Acyclic Cucurbit[n]uril-Type Receptors: Aromatic Wall Extension Enhances Binding Affinity, Delivers Helical Chirality, and Enables Fluorescence Sensing. Chemistry 2020; 26:15249-15258. [PMID: 32658342 PMCID: PMC7704778 DOI: 10.1002/chem.202002874] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Indexed: 12/30/2022]
Abstract
We report the linear extension from M1 to M2 to anthracene walled M3 which adopts a helical conformation (X-ray) to avoid unfavorable interactions between sidewalls. M3 is water soluble (=30 mm) and displays enhanced optical properties (ϵ=1.28×105 m-1 cm-1 , λmax =370 nm) relative to M2. The binding properties of M3 toward guests 1-29 were examined by 1 H NMR and ITC. The M3⋅guest complexes are stronger than the analogous complexes of M2 and M1. The enhanced binding of M3 toward neuromuscular blockers 25, 27-29 suggests that M3 holds significant promise as an in vivo reversal agent. The changes in fluorescence observed for M3⋅guest complexes are a function of the relative orientation of the anthracene sidewalls, guest concentration, Ka , and guest electronics which rendered M3 a superb component of a fluorescence sensing array. The work establishes M3 as a next generation sequestering agent and a versatile component of fluorescence sensors.
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Affiliation(s)
- Steven Murkli
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA
| | - Jared Klemm
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA
| | - David King
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA
| | - Peter Y Zavalij
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA
| | - Lyle Isaacs
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA
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29
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Hadar M, Kaizerman-Kane D, Zafrani Y, Cohen Y. Temperature-Dependent and pH-Responsive Pillar[5]arene-Based Complexes and Hydrogen-Bond-Based Supramolecular Pentagonal Boxes in Water. Chemistry 2020; 26:11250-11255. [PMID: 32259332 DOI: 10.1002/chem.202000972] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Indexed: 01/02/2023]
Abstract
Supramolecular systems in water are of paramount importance and those based on hydrogen bonds are both intriguing and scarce. Here, after studying the peculiar host-guest complexes formed between per-dimethylamino-pillar[5]arene (1) and the bis-sulfonates 2 a-c, we describe the formation of the first hydrogen-bond-based supramolecular pentagonal boxes (SPBs), which are stable in water. These pH-responsive SPBs are constructed from 1 as a body, benzene polycarboxylic acids 3 a,b as lid compounds, and 2 a-c as guests. We demonstrate that encapsulation of 2 a-c in pillar[5]arene 1 and in the highly stable water-soluble SPBs, that is, 1(3 a)2 and 1(3 b)2 , is both temperature and pH dependent and, quite interestingly, depends, on the nature of the lid compounds used for capping the boxes even at high pH. We also highlight the difference in the 1 H NMR characteristics of 2 b and 2 c in the cavity of 1 and the SPBs.
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Affiliation(s)
- Maya Hadar
- School of Chemistry, Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Dana Kaizerman-Kane
- School of Chemistry, Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Yossi Zafrani
- Department of Organic Chemistry, Israel Institute for Biological Research, Ness-Ziona, 74000, Israel
| | - Yoram Cohen
- School of Chemistry, Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
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30
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Syamala PPN, Würthner F. Modulation of the Self-Assembly of π-Amphiphiles in Water from Enthalpy- to Entropy-Driven by Enwrapping Substituents. Chemistry 2020; 26:8426-8434. [PMID: 32364616 PMCID: PMC7384034 DOI: 10.1002/chem.202000995] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 04/29/2020] [Indexed: 12/22/2022]
Abstract
Depending on the connectivity of solubilizing oligoethylene glycol (OEG) side chains to the π-cores of amphiphilic naphthalene and perylene bisimide dyes, self-assembly in water occurs either upon heating or cooling. Herein, we show that this effect originates from differences in the enwrapping capability of the π-cores by the OEG chains. Rylene bisimides bearing phenyl substituents with three OEG chains attached directly to the hydrophobic π-cores are strongly sequestered by the OEG chains. These molecules self-assemble at elevated temperatures in an entropy-driven process according to temperature- and concentration-dependent UV/Vis spectroscopy and calorimetric dilution studies. In contrast, for rylene bisimides in which phenyl substituents with three OEG chains are attached via a methylene spacer, leading to much weaker sequestration, self-assembly originates upon cooling in an enthalpy-driven process. Our explanation for this controversial behavior is that the aggregation in the latter case is dictated by the release of "high energy water" from the hydrophobic π-surfaces as well as dispersion interactions between the π-scaffolds which drive the self-assembly in an enthalpically driven process. In contrast, for the former case we suggest that in addition to the conventional explanation of a dehydration of hydrogen-bonded water molecules from OEG units it is in particular the increase in conformational entropy of back-folded OEG side chains upon aggregation that provides the pronounced gain in entropy that drives the aggregation process. Thus, our studies revealed that a subtle change in the attachment of solubilizing substituents can switch the thermodynamic signature for the self-assembly of amphiphilic dyes in water from enthalpy- to entropy-driven.
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Affiliation(s)
- Pradeep P N Syamala
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Center for Nanosystems Chemistry (CNC), & Bavarian Polymer Institute (BPI), Universität Würzburg, Theodor-Boveri-Weg, 97074, Würzburg, Germany
| | - Frank Würthner
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Center for Nanosystems Chemistry (CNC), & Bavarian Polymer Institute (BPI), Universität Würzburg, Theodor-Boveri-Weg, 97074, Würzburg, Germany
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31
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Nilam M, Huang C, Karmacharya S, Aryal GH, Huang L, Nau WM, Assaf KI. Host‐Guest Complexation Affects Perylene‐Based Dye Aggregation. ChemistrySelect 2020. [DOI: 10.1002/slct.202000702] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Mohamed Nilam
- Department of Life Sciences and Chemistry Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Chusen Huang
- Department of Life Sciences and Chemistry Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Shreya Karmacharya
- Department of Life Sciences and Chemistry Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Gyan H. Aryal
- Department of Microbiology and Immunology, School of Medicine University of Nevada Reno, Nevada 89557 United States
| | - Liming Huang
- Department of Microbiology and Immunology, School of Medicine University of Nevada Reno, Nevada 89557 United States
| | - Werner M. Nau
- Department of Life Sciences and Chemistry Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
| | - Khaleel I. Assaf
- Department of Life Sciences and Chemistry Jacobs University Bremen Campus Ring 1 28759 Bremen Germany
- Department of Chemistry, Faculty of Science Al-Balqa Applied University 19117 Al-Salt Jordan
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32
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Assaf KI, Holub J, Bernhardt E, Oliva‐Enrich JM, Fernández Pérez MI, Canle M, Santaballa JA, Fanfrlík J, Hnyk D, Nau WM. Face-Fusion of Icosahedral Boron Hydride Increases Affinity to γ-Cyclodextrin: closo,closo-[B 21 H 18 ] - as an Anion with Very Low Free Energy of Dehydration. Chemphyschem 2020; 21:971-976. [PMID: 32163219 PMCID: PMC7318346 DOI: 10.1002/cphc.201901225] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 03/08/2020] [Indexed: 01/05/2023]
Abstract
The supramolecular recognition of closo,closo-[B21 H18 ]- by cyclodextrins (CDs) has been studied in aqueous solution by isothermal titration calorimetry and nuclear magnetic resonance spectroscopy. These solution studies follow up on previous mass-spectrometric measurements and computations, which indicated the formation and stability of CD ⋅ B21 H18- complexes in the gas phase. The thermodynamic signature of solution-phase binding is exceptional, the association constant for the γ-CD complex with B21 H18- reaches 1.8×106 M-1 , which is on the same order of magnitude as the so far highest observed value for the complex between γ-CD and a metallacarborane. The nature of the intermolecular interaction is also examined by quantum-mechanical computational protocols. These suggest that the desolvation penalty, which is particularly low for the B21 H18- anion, is the decisive factor for its high binding strength. The results further suggest that the elliptical macropolyhedral boron hydride is another example of a CD binder, whose extraordinary binding affinity is driven by the chaotropic effect, which describes the intrinsic affinity of large polarizable and weakly solvated chaotropic anions to hydrophobic cavities and surfaces in aqueous solution.
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Affiliation(s)
- Khaleel I. Assaf
- Department of Life Sciences and ChemistryJacobs University BremenCampus Ring 128759BremenGermany
- Department of ChemistryAl-Balqa Applied University19117Al-SaltJordan
| | - Josef Holub
- Institute of Inorganic Chemistry of the Czech Academy of Sciences25068Husinec-ŘežCzech Republic
| | - Eduard Bernhardt
- Bergische University WuppertalGaussstrasse 2042097WuppertalGermany
| | | | - M. Isabel Fernández Pérez
- Departamento de QuímicaFacultade de Ciencias and CICAZapateiraUniversidade da Coruña Grupo de Reactividade Química e Fotorreactividade (REACT!) ESP-15071CoruñaSpain
| | - Moisés Canle
- Departamento de QuímicaFacultade de Ciencias and CICAZapateiraUniversidade da Coruña Grupo de Reactividade Química e Fotorreactividade (REACT!) ESP-15071CoruñaSpain
| | - J. Arturo Santaballa
- Departamento de QuímicaFacultade de Ciencias and CICAZapateiraUniversidade da Coruña Grupo de Reactividade Química e Fotorreactividade (REACT!) ESP-15071CoruñaSpain
| | - Jindřich Fanfrlík
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of SciencesFlemingovo nam. 216610PragueCzech Republic
| | - Drahomír Hnyk
- Institute of Inorganic Chemistry of the Czech Academy of Sciences25068Husinec-ŘežCzech Republic
| | - Werner M. Nau
- Department of Life Sciences and ChemistryJacobs University BremenCampus Ring 128759BremenGermany
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33
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Leko K, Hanževački M, Brkljača Z, Pičuljan K, Ribić R, Požar J. Solvophobically Driven Complexation of Adamantyl Mannoside with β‐Cyclodextrin in Water and Structured Organic Solvents. Chemistry 2020; 26:5208-5219. [DOI: 10.1002/chem.202000282] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Indexed: 01/20/2023]
Affiliation(s)
- Katarina Leko
- Department of ChemistryFaculty of ScienceUniversity of Zagreb Horvatovac 102a 10000 Zagreb Croatia
| | - Marko Hanževački
- Division of Physical ChemistryRuđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
- Department of Chemical and Environmental EngineeringThe University of Nottingham University Park Nottingham NG7 2RD UK
| | - Zlatko Brkljača
- Division of Organic Chemistry and BiochemistryRuđer Bošković Institute Bijenička 54 10000 Zagreb Croatia
| | - Katarina Pičuljan
- Department of ChemistryFaculty of ScienceUniversity of Zagreb Horvatovac 102a 10000 Zagreb Croatia
| | - Rosana Ribić
- Department of ChemistryFaculty of ScienceUniversity of Zagreb Horvatovac 102a 10000 Zagreb Croatia
- University Center VaraždinUniversity North Jurja Križanića 31b 42000 Varaždin Croatia
| | - Josip Požar
- Department of ChemistryFaculty of ScienceUniversity of Zagreb Horvatovac 102a 10000 Zagreb Croatia
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34
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Shimoyama D, Haino T. Entropy‐Driven Cooperativity in the Guest Binding of an Octaphosphonate Bis‐cavitand. Chemistry 2020; 26:3074-3079. [DOI: 10.1002/chem.201905036] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Daisuke Shimoyama
- Department of ChemistryGraduate School of ScienceHiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima 739-8526 Japan
| | - Takeharu Haino
- Department of ChemistryGraduate School of ScienceHiroshima University 1-3-1 Kagamiyama Higashi-Hiroshima 739-8526 Japan
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35
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Aliev AE, Motherwell WB. Some Recent Advances in the Design and Use of Molecular Balances for the Experimental Quantification of Intramolecular Noncovalent Interactions of π Systems. Chemistry 2019; 25:10516-10530. [DOI: 10.1002/chem.201900854] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 05/09/2019] [Indexed: 02/03/2023]
Affiliation(s)
- Abil E. Aliev
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
| | - William B. Motherwell
- Department of ChemistryUniversity College London 20 Gordon Street London WC1H 0AJ UK
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36
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Gill AD, Perez L, Salinas INQ, Byers SR, Liu Y, Hickey BL, Zhong W, Hooley RJ. Selective Array‐Based Sensing of Anabolic Steroids in Aqueous Solution by Host–Guest Reporter Complexes. Chemistry 2019; 25:1740-1745. [DOI: 10.1002/chem.201804854] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Indexed: 12/22/2022]
Affiliation(s)
- Adam D. Gill
- Department of Biochemistry and Molecular Biology University of California-Riverside Riverside CA 92521 USA
| | - Lizeth Perez
- Department of Chemistry University of California-Riverside Riverside CA 92521 USA
| | - Isaac N. Q. Salinas
- Department of Statistics University of California-Riverside Riverside CA 92521 USA
| | - Samantha R. Byers
- Department of Biochemistry and Molecular Biology University of California-Riverside Riverside CA 92521 USA
| | - Yang Liu
- Environmental Toxicology Program University of California-Riverside Riverside CA 92521 USA
| | - Briana L. Hickey
- Department of Chemistry University of California-Riverside Riverside CA 92521 USA
| | - Wenwan Zhong
- Department of Chemistry University of California-Riverside Riverside CA 92521 USA
- Environmental Toxicology Program University of California-Riverside Riverside CA 92521 USA
| | - Richard J. Hooley
- Department of Chemistry University of California-Riverside Riverside CA 92521 USA
- Department of Biochemistry and Molecular Biology University of California-Riverside Riverside CA 92521 USA
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37
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Collin S, Parrot A, Marcelis L, Brunetti E, Jabin I, Bruylants G, Bartik K, Reinaud O. Submerging a Biomimetic Metallo‐Receptor in Water for Molecular Recognition: Micellar Incorporation or Water Solubilization? A Case Study. Chemistry 2018; 24:17964-17974. [DOI: 10.1002/chem.201804768] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 10/16/2018] [Indexed: 12/25/2022]
Affiliation(s)
- Solène Collin
- Laboratory of Pharmacological and Toxicological Chemistry, and BiochemistryUniversité Paris Descartes 45, rue des Saints-Pères 75006 Paris France
| | - Arnaud Parrot
- Laboratory of Pharmacological and Toxicological Chemistry, and BiochemistryUniversité Paris Descartes 45, rue des Saints-Pères 75006 Paris France
| | - Lionel Marcelis
- Engineering of Molecular NanosystemsUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP165/64 1050 Brussels Belgium
| | - Emilio Brunetti
- Engineering of Molecular NanosystemsUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP165/64 1050 Brussels Belgium
- Laboratory of Organic ChemistryUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP160/06 1050 Brussels Belgium
| | - Ivan Jabin
- Laboratory of Organic ChemistryUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP160/06 1050 Brussels Belgium
| | - Gilles Bruylants
- Engineering of Molecular NanosystemsUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP165/64 1050 Brussels Belgium
| | - Kristin Bartik
- Engineering of Molecular NanosystemsUniversité Libre de Bruxelles Avenue F. D. Roosevelt 50, CP165/64 1050 Brussels Belgium
| | - Olivia Reinaud
- Laboratory of Pharmacological and Toxicological Chemistry, and BiochemistryUniversité Paris Descartes 45, rue des Saints-Pères 75006 Paris France
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38
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Xu Y, Yuan T, Nour HF, Fang L, Olson MA. Bis‐Bipyridinium Gemini Surfactant‐Based Supramolecular Helical Fibers and Solid State Thermochromism. Chemistry 2018; 24:16558-16569. [DOI: 10.1002/chem.201803496] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Indexed: 12/27/2022]
Affiliation(s)
- Yan Xu
- Institute for Molecular Design and Synthesis, School of Pharmaceutical Science and Technology Tianjin University 92 Weijin Road Nankai District Tianjin 300072 P.R. China
| | - Tianyu Yuan
- Institute for Molecular Design and Synthesis, School of Pharmaceutical Science and Technology Tianjin University 92 Weijin Road Nankai District Tianjin 300072 P.R. China
- Department of Chemistry Texas A&M University 3255, TAMU College Station TX 77840 USA
| | - Hany F. Nour
- Institute for Molecular Design and Synthesis, School of Pharmaceutical Science and Technology Tianjin University 92 Weijin Road Nankai District Tianjin 300072 P.R. China
- National Research Centre Chemical Industries Research Division, Department of Photochemistry 33 El Buhouth Street, P.O. Box 12622 Giza Egypt
| | - Lei Fang
- Department of Chemistry Texas A&M University 3255, TAMU College Station TX 77840 USA
| | - Mark A. Olson
- Institute for Molecular Design and Synthesis, School of Pharmaceutical Science and Technology Tianjin University 92 Weijin Road Nankai District Tianjin 300072 P.R. China
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39
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Assaf KI, Nau WM. The Chaotropic Effect as an Assembly Motif in Chemistry. Angew Chem Int Ed Engl 2018; 57:13968-13981. [PMID: 29992706 PMCID: PMC6220808 DOI: 10.1002/anie.201804597] [Citation(s) in RCA: 181] [Impact Index Per Article: 30.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 07/01/2018] [Indexed: 11/26/2022]
Abstract
Following up on scattered reports on interactions of conventional chaotropic ions (for example, I- , SCN- , ClO4- ) with macrocyclic host molecules, biomolecules, and hydrophobic neutral surfaces in aqueous solution, the chaotropic effect has recently emerged as a generic driving force for supramolecular assembly, orthogonal to the hydrophobic effect. The chaotropic effect becomes most effective for very large ions that extend beyond the classical Hofmeister scale and that can be referred to as superchaotropic ions (for example, borate clusters and polyoxometalates). In this Minireview, we present a continuous scale of water-solute interactions that includes the solvation of kosmotropic, chaotropic, and hydrophobic solutes, as well as the creation of void space (cavitation). Recent examples for the association of chaotropic anions to hydrophobic synthetic and biological binding sites, lipid bilayers, and surfaces are discussed.
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Affiliation(s)
- Khaleel I. Assaf
- Department of Life Sciences and ChemistryJacobs University BremenCampus Ring 128759BremenGermany
| | - Werner M. Nau
- Department of Life Sciences and ChemistryJacobs University BremenCampus Ring 128759BremenGermany
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40
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Gruber T. Synthetic Receptors for the Recognition and Discrimination of Post-Translationally Methylated Lysines. Chembiochem 2018; 19:2324-2340. [DOI: 10.1002/cbic.201800398] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Tobias Gruber
- School of Pharmacy; University of Lincoln; Joseph Banks Laboratories; Green Lane Lincoln LN6 7DL UK
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41
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Rösel S, Becker J, Allen WD, Schreiner PR. Probing the Delicate Balance between Pauli Repulsion and London Dispersion with Triphenylmethyl Derivatives. J Am Chem Soc 2018; 140:14421-14432. [DOI: 10.1021/jacs.8b09145] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sören Rösel
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Jonathan Becker
- Institute of Inorganic and Analytical Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | | | - Peter R. Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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42
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Affiliation(s)
- Khaleel I. Assaf
- Department of Life Sciences and Chemistry; Jacobs University Bremen; Campus Ring 1 28759 Bremen Deutschland
| | - Werner M. Nau
- Department of Life Sciences and Chemistry; Jacobs University Bremen; Campus Ring 1 28759 Bremen Deutschland
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43
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Chen Y, Jami-Alahmadi Y, Unikela KS, Bodwell GJ, Fridgen TD. Endo or Exo? Structures of Gas-Phase Alkali Metal Cation/Aromatic Half-Belt Complexes. Chemphyschem 2018; 19:2194-2199. [PMID: 29741278 DOI: 10.1002/cphc.201800371] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Indexed: 11/11/2022]
Abstract
1,1,9,9-Tetramethyl[9](2,11)teropyrenophane (TM9TP), a belt-shaped molecule, has a sizable cavity that molecules or ions could occupy. In this study, the question of whether TM9TP forms gas-phase ion-molecule complexes with metal cations (K+ , Rb+ , Cs+ ) situated inside or outside the TM9TP cavity was addressed using both experimental and computational methods. Complexes were trapped in a Fourier transform ion cyclotron resonance mass spectrometer and their structures were explored by some novel physical chemistry/mass spectrometry methods. Blackbody infrared radiative dissociation kinetics reveal two populations of ions, a fast dissociating fraction and a persistent fraction. Infrared multiphoton dissociation spectra (vibrational spectra) provide very strong evidence that the most abundant population is a complex where the metal cation is inside the TM9TP cavity, endo-TM9TP. Red-shifted C-H stretching bands present in the gas-phase vibrational spectra of these ionic complexes show that there is an interaction between the metal cation and bridge C-H bonds due to the cation sitting inside the cavity of TM9TP. B3LYP/6-31+G(d,p) calculations showed the endo complexes to be the lowest in energy; about 60 kJ mol-1 more thermodynamically stable and more than 120 kJ mol-1 kinetically more stable than the exo complex.
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Affiliation(s)
- Yanyang Chen
- Department of Chemistry, Memorial University of Newfoundland, Memorial University, St. John's, NL, A1B 3X7, Canada
| | - Yasaman Jami-Alahmadi
- Department of Chemistry, Memorial University of Newfoundland, Memorial University, St. John's, NL, A1B 3X7, Canada
| | - Kiran Sagar Unikela
- Department of Chemistry, Memorial University of Newfoundland, Memorial University, St. John's, NL, A1B 3X7, Canada
| | - Graham J Bodwell
- Department of Chemistry, Memorial University of Newfoundland, Memorial University, St. John's, NL, A1B 3X7, Canada
| | - Travis D Fridgen
- Department of Chemistry, Memorial University of Newfoundland, Memorial University, St. John's, NL, A1B 3X7, Canada
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44
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Meng LJ, Tian X, Huang S, Lin RL, Liu XH, Zhu QJ, Tao Z, Liu JX. Solvent- and Heat-Dependent Binding Behaviors of HMeQ[6] with Alkyldiammonium Ions. ChemistrySelect 2018. [DOI: 10.1002/slct.201801062] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ling-Jian Meng
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province; Guizhou University; Guiyang 550025 China
| | - Xiao Tian
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province; Guizhou University; Guiyang 550025 China
| | - Sai Huang
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province; Guizhou University; Guiyang 550025 China
| | - Rui-Lian Lin
- College of Chemistry and Chemical Engineering; Anhui University of Technology; Maanshan 243002 China
| | - Xin-Hua Liu
- School of Pharmacy; Anhui Medical University, Hefei; 230032,P. R. China
| | - Qian-Jiang Zhu
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province; Guizhou University; Guiyang 550025 China
| | - Zhu Tao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province; Guizhou University; Guiyang 550025 China
| | - Jing-Xin Liu
- College of Chemistry and Chemical Engineering; Anhui University of Technology; Maanshan 243002 China
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45
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Lu X, Samanta SK, Zavalij PY, Isaacs L. Blurring the Lines between Host and Guest: A Chimeric Receptor Derived from Cucurbituril and Triptycene. Angew Chem Int Ed Engl 2018; 57:8073-8078. [PMID: 29749674 DOI: 10.1002/anie.201803132] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 04/30/2018] [Indexed: 12/13/2022]
Abstract
We report the synthesis and X-ray crystal structure of a cucurbituril-triptycene chimeric receptor (1). Host 1 binds to guests typical of CB[6]-CB[8], but also binds to larger guests such as blue box (20) and the Fujita square (22). Intriguingly, the geometries of the 1⋅20 and 1⋅22 complexes blur the lines between host and guest in that both components fulfill both roles within each complex. The fluorescence output of 1 is fully quenched by the formation of complexes with pyridinium-derived guests.
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Affiliation(s)
- Xiaoyong Lu
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| | - Soumen K Samanta
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| | - Peter Y Zavalij
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| | - Lyle Isaacs
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
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46
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Lu X, Samanta SK, Zavalij PY, Isaacs L. Blurring the Lines between Host and Guest: A Chimeric Receptor Derived from Cucurbituril and Triptycene. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803132] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Xiaoyong Lu
- Department of Chemistry and Biochemistry University of Maryland College Park MD 20742 USA
| | - Soumen K. Samanta
- Department of Chemistry and Biochemistry University of Maryland College Park MD 20742 USA
| | - Peter Y. Zavalij
- Department of Chemistry and Biochemistry University of Maryland College Park MD 20742 USA
| | - Lyle Isaacs
- Department of Chemistry and Biochemistry University of Maryland College Park MD 20742 USA
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47
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Guagnini F, Antonik PM, Rennie ML, O'Byrne P, Khan AR, Pinalli R, Dalcanale E, Crowley PB. Cucurbit[7]uril-Dimethyllysine Recognition in a Model Protein. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803232] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Francesca Guagnini
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Paweł M. Antonik
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
| | - Martin L. Rennie
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
| | - Peter O'Byrne
- School of Biochemistry and Immunology; Trinity College Dublin; Dublin 2 Ireland
| | - Amir R. Khan
- School of Biochemistry and Immunology; Trinity College Dublin; Dublin 2 Ireland
| | - Roberta Pinalli
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Enrico Dalcanale
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Peter B. Crowley
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
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48
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Guagnini F, Antonik PM, Rennie ML, O'Byrne P, Khan AR, Pinalli R, Dalcanale E, Crowley PB. Cucurbit[7]uril-Dimethyllysine Recognition in a Model Protein. Angew Chem Int Ed Engl 2018; 57:7126-7130. [DOI: 10.1002/anie.201803232] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Indexed: 01/02/2023]
Affiliation(s)
- Francesca Guagnini
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Paweł M. Antonik
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
| | - Martin L. Rennie
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
| | - Peter O'Byrne
- School of Biochemistry and Immunology; Trinity College Dublin; Dublin 2 Ireland
| | - Amir R. Khan
- School of Biochemistry and Immunology; Trinity College Dublin; Dublin 2 Ireland
| | - Roberta Pinalli
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Enrico Dalcanale
- Dipartimento di Scienze Chimiche della Vita e della Sostenibilità Ambientale; Università di Parma and INSTM UdR Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Peter B. Crowley
- School of Chemistry; National University of Ireland Galway; University Road Galway Ireland
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49
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Kusaba S, Yamashina M, Akita M, Kikuchi T, Yoshizawa M. Hydrophilic Oligo(lactic acid)s Captured by a Hydrophobic Polyaromatic Cavity in Water. Angew Chem Int Ed Engl 2018; 57:3706-3710. [DOI: 10.1002/anie.201800432] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Shunsuke Kusaba
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Masahiro Yamashina
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Munetaka Akita
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Takashi Kikuchi
- Rigaku Corporation; 3-9-12 Matsubaracho, Akishima Tokyo 196-8666 Japan
| | - Michito Yoshizawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
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50
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Kusaba S, Yamashina M, Akita M, Kikuchi T, Yoshizawa M. Hydrophilic Oligo(lactic acid)s Captured by a Hydrophobic Polyaromatic Cavity in Water. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800432] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Shunsuke Kusaba
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Masahiro Yamashina
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Munetaka Akita
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
| | - Takashi Kikuchi
- Rigaku Corporation; 3-9-12 Matsubaracho, Akishima Tokyo 196-8666 Japan
| | - Michito Yoshizawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research; Tokyo Institute of Technology; 4259 Nagatsuta, Midori-ku Yokohama 226-8503 Japan
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