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Goldberga I, Hung I, Sarou-Kanian V, Gervais C, Gan Z, Novák-Špačková J, Métro TX, Leroy C, Berthomieu D, van der Lee A, Bonhomme C, Laurencin D. High-Resolution 17O Solid-State NMR as a Unique Probe for Investigating Oxalate Binding Modes in Materials: The Case Study of Calcium Oxalate Biominerals. Inorg Chem 2024; 63:10179-10193. [PMID: 38729620 PMCID: PMC11151208 DOI: 10.1021/acs.inorgchem.4c00300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/20/2024] [Accepted: 04/02/2024] [Indexed: 05/12/2024]
Abstract
Oxalate ligands are found in many classes of materials, including energy storage materials and biominerals. Determining their local environments at the atomic scale is thus paramount to establishing the structure and properties of numerous phases. Here, we show that high-resolution 17O solid-state NMR is a valuable asset for investigating the structure of crystalline oxalate systems. First, an efficient 17O-enrichment procedure of oxalate ligands is demonstrated using mechanochemistry. Then, 17O-enriched oxalates were used for the synthesis of the biologically relevant calcium oxalate monohydrate (COM) phase, enabling the analysis of its structure and heat-induced phase transitions by high-resolution 17O NMR. Studies of the low-temperature COM form (LT-COM), using magnetic fields from 9.4 to 35.2 T, as well as 13C-17O MQ/D-RINEPT and 17O{1H} MQ/REDOR experiments, enabled the 8 inequivalent oxygen sites of the oxalates to be resolved, and tentatively assigned. The structural changes upon heat treatment of COM were also followed by high-resolution 17O NMR, providing new insight into the structures of the high-temperature form (HT-COM) and anhydrous calcium oxalate α-phase (α-COA), including the presence of structural disorder in the latter case. Overall, this work highlights the ease associated with 17O-enrichment of oxalate oxygens, and how it enables high-resolution solid-state NMR, for "NMR crystallography" investigations.
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Affiliation(s)
- Ieva Goldberga
- ICGM,
Univ Montpellier, CNRS, ENSCM, 34293 Montpellier, France
| | - Ivan Hung
- National
High Magnetic Laboratory (NHMFL), Tallahassee, Florida 32310, United States
| | | | | | - Zhehong Gan
- National
High Magnetic Laboratory (NHMFL), Tallahassee, Florida 32310, United States
| | | | | | - César Leroy
- ICGM,
Univ Montpellier, CNRS, ENSCM, 34293 Montpellier, France
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2
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Quantitative analysis of calcium oxalate monohydrate and dihydrate for elucidating the formation mechanism of calcium oxalate kidney stones. PLoS One 2023; 18:e0282743. [PMID: 36893192 PMCID: PMC9997882 DOI: 10.1371/journal.pone.0282743] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 02/21/2023] [Indexed: 03/10/2023] Open
Abstract
We sought to identify and quantitatively analyze calcium oxalate (CaOx) kidney stones on the order of micrometers, with a focus on the quantitative identification of calcium oxalate monohydrate (COM) and dihydrate (COD). We performed Fourier transform infrared (FTIR) spectroscopy, powder X-ray diffraction (PXRD), and microfocus X-ray computed tomography measurements (microfocus X-ray CT) and compared their results. An extended analysis of the FTIR spectrum focusing on the 780 cm-1 peak made it possible to achieve a reliable analysis of the COM/COD ratio. We succeeded in the quantitative analysis of COM/COD in 50-μm2 areas by applying microscopic FTIR for thin sections of kidney stones, and by applying microfocus X-ray CT system for bulk samples. The analysis results based on the PXRD measurements with micro-sampling, the microscopic FTIR analysis of thin sections, and the microfocus X-ray CT system observation of a bulk kidney stone sample showed roughly consistent results, indicating that all three methods can be used complementarily. This quantitative analysis method evaluates the detailed CaOx composition on the preserved stone surface and provides information on the stone formation processes. This information clarifies where and which crystal phase nucleates, how the crystals grow, and how the transition from the metastable phase to the stable phase proceeds. The phase transition affects the growth rate and hardness of kidney stones and thus provides crucial clues to the kidney stone formation process.
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3
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Bazin D, Bouderlique E, Tang E, Daudon M, Haymann JP, Frochot V, Letavernier E, Van de Perre E, Williams JC, Lingeman JE, Borondics F. Using mid infrared to perform investigations beyond the diffraction limits of microcristalline pathologies: advantages and limitation of Optical PhotoThermal IR spectroscopy. CR CHIM 2022. [DOI: 10.5802/crchim.196] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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4
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Goldberga I, Patris N, Chen CH, Thomassot E, Trébosc J, Hung I, Gan Z, Berthomieu D, Métro TX, Bonhomme C, Gervais C, Laurencin D. First Direct Insight into the Local Environment and Dynamics of Water Molecules in the Whewellite Mineral Phase: Mechanochemical Isotopic Enrichment and High-Resolution 17O and 2H NMR Analyses. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2022; 126:12044-12059. [PMID: 35928237 PMCID: PMC9340807 DOI: 10.1021/acs.jpcc.2c02070] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Calcium oxalate minerals of the general formula CaC2O4 . xH2O are widely present in nature and usually associated with pathological calcifications, constituting up to 70-80% of the mineral component of renal calculi. The monohydrate phase (CaC2O4 .H2O, COM) is the most stable form, accounting for the majority of the hydrated calcium oxalates found. These mineral phases have been studied extensively via X-ray diffraction and IR spectroscopy and, to a lesser extent, using 1H, 13C, and 43Ca solid-state NMR spectroscopy. However, several aspects of their structure and reactivity are still unclear, such as the evolution from low- to high-temperature COM structures (LT-COM and HT-COM, respectively) and the involvement of water molecules in this phase transition. Here, we report for the first time a 17O and 2H solid-state NMR investigation of the local structure and dynamics of water in the COM phase. A new procedure for the selective 17O- and 2H-isotopic enrichment of water molecules within the COM mineral is presented using mechanochemistry, which employs only microliter quantities of enriched water and leads to exchange yields up to ∼30%. 17O NMR allows both crystallographically inequivalent water molecules in the LT-COM structure to be resolved, while 2H NMR studies provide unambiguous evidence that these water molecules are undergoing different types of motions at high temperatures without exchanging with one another. Dynamics appear to be essential for water molecules in these structures, which have not been accounted for in previous structural studies on the HT-COM structure due to lack of available tools, highlighting the importance of such NMR investigations for refining the overall knowledge on biologically relevant minerals like calcium oxalates.
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Affiliation(s)
- Ieva Goldberga
- ICGM,
Univ Montpellier, CNRS, ENSCM, 34293 Montpellier, France
| | - Nicolas Patris
- HydroSciences
Montpellier, UMR 5151, CNRS, IRD, Université
de Montpellier, 34090 Montpellier, France
| | - Chia-Hsin Chen
- ICGM,
Univ Montpellier, CNRS, ENSCM, 34293 Montpellier, France
| | - Emilie Thomassot
- Université
de Lorraine, CRPG, CNRS UMR 7358, 54500 Vandœuvre-lès-Nancy, France
| | - Julien Trébosc
- Université
de Lille, CNRS, INRAE, Centrale Lille, Université d’Artois
FR2638−IMEC−Institut Michel Eugène Chevreul, 59000 Lille, France
| | - Ivan Hung
- National
High Magnetic Field Laboratory (NHMFL), Tallahassee, Florida 32310, United States
| | - Zhehong Gan
- National
High Magnetic Field Laboratory (NHMFL), Tallahassee, Florida 32310, United States
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5
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Qin D, He Z, Li P, Zhang S. Liquid-Liquid Phase Separation in Nucleation Process of Biomineralization. Front Chem 2022; 10:834503. [PMID: 35186885 PMCID: PMC8854647 DOI: 10.3389/fchem.2022.834503] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 01/14/2022] [Indexed: 12/21/2022] Open
Abstract
Biomineralization is a typical interdisciplinary subject attracting biologists, chemists, and geologists to figure out its potential mechanism. A mounting number of studies have revealed that the classical nucleation theory is not suitable for all nucleation process of biominerals, and phase-separated structures such as polymer-induced liquid precursors (PILPs) play essential roles in the non-classical nucleation processes. These structures are able to play diverse roles biologically or pathologically, and could also give inspiring clues to bionic applications. However, a lot of confusion and dispute occurred due to the intricacy and interdisciplinary nature of liquid precursors. Researchers in different fields may have different opinions because the terminology and current state of understanding is not common knowledge. As a result, our team reviewed the most recent articles focusing on the nucleation processes of various biominerals to clarify the state-of-the-art understanding of some essential concepts and guide the newcomers to enter this intricate but charming field.
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Affiliation(s)
| | | | - Peng Li
- *Correspondence: Peng Li, ; Shutian Zhang,
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Leroy C, Bonhomme-Coury L, Gervais C, Tielens F, Babonneau F, Daudon M, Bazin D, Letavernier E, Laurencin D, Iuga D, Hanna J, Smith M, Bonhomme C. A novel multinuclear solid-state NMR approach for the characterization of kidney stones. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2021; 2:653-671. [PMID: 37905220 PMCID: PMC10539836 DOI: 10.5194/mr-2-653-2021] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Accepted: 06/15/2021] [Indexed: 11/01/2023]
Abstract
The spectroscopic study of pathological calcifications (including kidney stones) is extremely rich and helps to improve the understanding of the physical and chemical processes associated with their formation. While Fourier transform infrared (FTIR) imaging and optical/electron microscopies are routine techniques in hospitals, there has been a dearth of solid-state NMR studies introduced into this area of medical research, probably due to the scarcity of this analytical technique in hospital facilities. This work introduces effective multinuclear and multidimensional solid-state NMR methodologies to study the complex chemical and structural properties characterizing kidney stone composition. As a basis for comparison, three hydrates (n = 1 , 2 and 3) of calcium oxalate are examined along with nine representative kidney stones. The multinuclear magic angle spinning (MAS) NMR approach adopted investigates the 1 H , 13 C , 31 P and 31 P nuclei, with the 1 H and 13 C MAS NMR data able to be readily deconvoluted into the constituent elements associated with the different oxalates and organics present. For the first time, the full interpretation of highly resolved 1 H NMR spectra is presented for the three hydrates, based on the structure and local dynamics. The corresponding 31 P MAS NMR data indicates the presence of low-level inorganic phosphate species; however, the complexity of these data make the precise identification of the phases difficult to assign. This work provides physicians, urologists and nephrologists with additional avenues of spectroscopic investigation to interrogate this complex medical dilemma that requires real, multitechnique approaches to generate effective outcomes.
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Affiliation(s)
- César Leroy
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
- Institut Charles Gerhardt Montpellier, CNRS, ENSCM, Université de Montpellier, Montpellier, France
| | - Laure Bonhomme-Coury
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Christel Gervais
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Frederik Tielens
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
- General Chemistry (ALGC) – Materials Modelling Group, Vrije
Universiteit Brussel (Free University Brussels – VUB), Pleinlaan 2, 1050
Brussels, Belgium
| | - Florence Babonneau
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Michel Daudon
- AP-HP, Hôpital Tenon, Explorations Fonctionnelles
Multidisciplinaires et INSERM UMRS 1155, Sorbonne Université, Hôpital Tenon, Paris, France
| | - Dominique Bazin
- Institut de Chimie Physique, UMR CNRS 8000, Bâtiment 350,
Université Paris Saclay, 91405 Orsay CEDEX, France
- Laboratoire de Physique des Solides, UMR CNRS 8502, Bâtiment 510, Université Paris-Sud, 91405 Orsay CEDEX, France
| | - Emmanuel Letavernier
- AP-HP, Hôpital Tenon, Explorations Fonctionnelles
Multidisciplinaires et INSERM UMRS 1155, Sorbonne Université, Hôpital Tenon, Paris, France
| | - Danielle Laurencin
- Institut Charles Gerhardt Montpellier, CNRS, ENSCM, Université de Montpellier, Montpellier, France
| | - Dinu Iuga
- Department of Physics, University of Warwick, Gibbet Hill Road,
Coventry CV4 7AL, United Kingdom
| | - John V. Hanna
- Department of Physics, University of Warwick, Gibbet Hill Road,
Coventry CV4 7AL, United Kingdom
| | - Mark E. Smith
- Department of Chemistry, University of Southampton, Southampton SO17 1BJ, United Kingdom
| | - Christian Bonhomme
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
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Abstract
AbstractRecent advances in our understanding of CaCO
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8
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Shedding light on the morphology of calcium oxalate monohydrate crystallites present in kidney biopsies in the case of hyperoxaluria. CR CHIM 2016. [DOI: 10.1016/j.crci.2016.02.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Affiliation(s)
- Eva Weber
- Department of Materials Science and Engineering and the Russell Berrie Nanotechnology Institute; Technion−Israel Institute of Technology; 32000 Haifa Israel
- INM - Leibniz Institute for New Materials; 66123 Saarbruecken Germany
| | - Andreas Verch
- INM - Leibniz Institute for New Materials; 66123 Saarbruecken Germany
| | - Davide Levy
- Department of Materials Science and Engineering and the Russell Berrie Nanotechnology Institute; Technion−Israel Institute of Technology; 32000 Haifa Israel
| | - Andy N. Fitch
- European Synchrotron Radiation Facility; B.P. 220 38043 Grenoble Cedex France
| | - Boaz Pokroy
- Department of Materials Science and Engineering and the Russell Berrie Nanotechnology Institute; Technion−Israel Institute of Technology; 32000 Haifa Israel
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