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For: Kejnovská I, Kypr J, Vorlícková M. Circular dichroism spectroscopy of conformers of (guanine + adenine) repeat strands of DNA. Chirality 2003;15:584-92. [PMID: 12840822 DOI: 10.1002/chir.10249] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Number Cited by Other Article(s)
1
Kudo K, Hori K, Asamitsu S, Maeda K, Aida Y, Hokimoto M, Matsuo K, Yabuki Y, Shioda N. Structural polymorphism of the nucleic acids in pentanucleotide repeats associated with the neurological disorder CANVAS. J Biol Chem 2024;300:107138. [PMID: 38447794 PMCID: PMC10999818 DOI: 10.1016/j.jbc.2024.107138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 02/15/2024] [Accepted: 02/27/2024] [Indexed: 03/08/2024]  Open
2
Abdi MH, Zamiri B, Pazuki G, Sardari S, Pearson CE. Pathogenic CANVAS-causing but not nonpathogenic RFC1 DNA/RNA repeat motifs form quadruplex or triplex structures. J Biol Chem 2023;299:105202. [PMID: 37660923 PMCID: PMC10563062 DOI: 10.1016/j.jbc.2023.105202] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 08/22/2023] [Accepted: 08/25/2023] [Indexed: 09/05/2023]  Open
3
Trizna L, Osif B, Víglaský V. G-QINDER Tool: Bioinformatically Predicted Formation of Different Four-Stranded DNA Motifs from (GT)n and (GA)n Repeats. Int J Mol Sci 2023;24:ijms24087565. [PMID: 37108727 DOI: 10.3390/ijms24087565] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 04/10/2023] [Accepted: 04/18/2023] [Indexed: 04/29/2023]  Open
4
Maksudov F, Kliuchnikov E, Pierson D, Ujwal M, Marx KA, Chanda A, Barsegov V. Therapeutic phosphorodiamidate morpholino oligonucleotides: Physical properties, solution structures, and folding thermodynamics. MOLECULAR THERAPY. NUCLEIC ACIDS 2023;31:631-647. [PMID: 36910708 PMCID: PMC9996446 DOI: 10.1016/j.omtn.2023.02.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 02/10/2023] [Indexed: 02/16/2023]
5
Ye M, Chen EV, Pfeil SH, Martin KN, Atrafi T, Yun S, Martinez Z, Yatsunyk LA. Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad. Bioorg Med Chem 2023;77:117112. [PMID: 36508994 PMCID: PMC9812923 DOI: 10.1016/j.bmc.2022.117112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/24/2022] [Accepted: 11/28/2022] [Indexed: 12/03/2022]
6
Yaşar P, Kars G, Yavuz K, Ayaz G, Oğuztüzün Ç, Bilgen E, Suvacı Z, Çetinkol ÖP, Can T, Muyan M. A CpG island promoter drives the CXXC5 gene expression. Sci Rep 2021;11:15655. [PMID: 34341443 PMCID: PMC8329181 DOI: 10.1038/s41598-021-95165-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 07/16/2021] [Indexed: 02/06/2023]  Open
7
Kufner CL, Zinth W, Bucher DB. UV-Induced Charge-Transfer States in Short Guanosine-Containing DNA Oligonucleotides. Chembiochem 2020;21:2306-2310. [PMID: 32239789 PMCID: PMC7496882 DOI: 10.1002/cbic.202000103] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Indexed: 11/24/2022]
8
Effect of Chromatographic Conditions on Supercoiled Plasmid DNA Stability and Bioactivity. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9235170] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
9
Zhu J, Yan Z, Zhou W, Liu C, Wang J, Wang E. Lighting Up the Thioflavin T by Parallel-Stranded TG(GA) n DNA Homoduplexes. ACS Sens 2018;3:1118-1125. [PMID: 29749724 DOI: 10.1021/acssensors.8b00141] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
10
Park Y, Kim KT, Kim BH. G-Quadruplex formation using fluorescent oligonucleotides as a detection method for discriminating AGG trinucleotide repeats. Chem Commun (Camb) 2018;52:12757-12760. [PMID: 27722273 DOI: 10.1039/c6cc06566j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
11
Sargsyan G, Balaz M. Porphyrin-DNA conjugates: porphyrin induced adenine-guanine homoduplex stabilization and interduplex assemblies. Org Biomol Chem 2012;10:5533-40. [PMID: 22692698 DOI: 10.1039/c2ob25710f] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
12
Cioffi MB, Kejnovsky E, Bertollo LAC. The chromosomal distribution of microsatellite repeats in the genome of the wolf fish Hoplias malabaricus, focusing on the sex chromosomes. Cytogenet Genome Res 2010;132:289-96. [PMID: 21099206 DOI: 10.1159/000322058] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/09/2010] [Indexed: 11/19/2022]  Open
13
Sousa A, Sousa F, Prazeres DMF, Queiroz JA. Histidine affinity chromatography of homo-oligonucleotides. Role of multiple interactions on retention. Biomed Chromatogr 2009;23:745-53. [PMID: 19296518 DOI: 10.1002/bmc.1179] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
14
Kubat Z, Hobza R, Vyskot B, Kejnovsky E. Microsatellite accumulation on the Y chromosome in Silene latifolia. Genome 2008;51:350-6. [PMID: 18438438 DOI: 10.1139/g08-024] [Citation(s) in RCA: 150] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
15
Paramasivam M, Cogoi S, Filichev VV, Bomholt N, Pedersen EB, Xodo LE. Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation. Nucleic Acids Res 2008;36:3494-507. [PMID: 18456705 PMCID: PMC2425464 DOI: 10.1093/nar/gkn242] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
16
Nový J, Böhm S, Králová J, Král V, Urbanová M. Formation and temperature stability of G-quadruplex structures studied by electronic and vibrational circular dichroism spectroscopy combined with ab initio calculations. Biopolymers 2008;89:144-52. [PMID: 17960602 DOI: 10.1002/bip.20875] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
17
Kypr J, Kejnovská I, Vorlícková M. Conformations of DNA strands containing GAGT, GACA, or GAGC tetranucleotide repeats. Biopolymers 2007;87:218-24. [PMID: 17680700 DOI: 10.1002/bip.20822] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
18
Sousa F, Prazeres D, Queiroz J. Circular dichroism investigation of the effect of plasmid DNA structure on retention in histidine chromatography. Arch Biochem Biophys 2007;467:154-62. [DOI: 10.1016/j.abb.2007.08.027] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2007] [Revised: 08/28/2007] [Accepted: 08/30/2007] [Indexed: 10/22/2022]
19
Vorlícková M, Bednárová K, Kejnovská I, Kypr J. Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions. Biopolymers 2007;86:1-10. [PMID: 17211886 DOI: 10.1002/bip.20672] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
20
Balaz M, Li BC, Jockusch S, Ellestad GA, Berova N. Tetraarylporphyrin as a selective molecular cap for non-Watson-Crick guanine-adenine base-pair sequences. Angew Chem Int Ed Engl 2007;45:3530-3. [PMID: 16625664 DOI: 10.1002/anie.200504431] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
21
Vorlícková M, Bednárová K, Kypr J. Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations. Biopolymers 2006;82:253-60. [PMID: 16506164 DOI: 10.1002/bip.20488] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
22
Balaz M, Li BC, Jockusch S, Ellestad GA, Berova N. Tetraarylporphyrin as a Selective Molecular Cap for Non-Watson–Crick Guanine–Adenine Base-Pair Sequences. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200504431] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
23
Kejnovská I, Kypr J, Vondrusková J, Vorlícková M. Towards a better understanding of the unusual conformations of the alternating guanine–adenine repeat strands of DNA. Biopolymers 2006;85:19-27. [PMID: 16958066 DOI: 10.1002/bip.20597] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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