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Ogiermann D, Perotti LE, Balzani D. A simple and efficient adaptive time stepping technique for low-order operator splitting schemes applied to cardiac electrophysiology. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2023; 39:e3670. [PMID: 36510350 DOI: 10.1002/cnm.3670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 10/25/2022] [Accepted: 12/04/2022] [Indexed: 06/17/2023]
Abstract
We present a simple, yet efficient adaptive time stepping scheme for cardiac electrophysiology (EP) simulations based on standard operator splitting techniques. The general idea is to exploit the relation between the splitting error and the reaction's magnitude-found in a previous one-dimensional analytical study by Spiteri and Ziaratgahi-to construct the new time step controller for three-dimensional problems. Accordingly, we propose to control the time step length of the operator splitting scheme as a function of the reaction magnitude, in addition to the common approach of adapting the reaction time step. This conforms with observations in numerical experiments supporting the need for a significantly smaller time step length during depolarization than during repolarization. The proposed scheme is compared with classical proportional-integral-differential controllers using state-of-the-art error estimators, which are also presented in details as they have not been previously applied in the context of cardiac EP with operator splitting techniques. Benchmarks show that choosing the time step as a sigmoidal function of the reaction magnitude is highly efficient and full cardiac cycles can be computed with precision even in a realistic biventricular setup. The proposed scheme outperforms common adaptive time stepping techniques, while depending on fewer tuning parameters.
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Affiliation(s)
- Dennis Ogiermann
- Chair of Continuum Mechanics, Ruhr University Bochum, Bochum, Germany
| | - Luigi E Perotti
- Mechanical and Aerospace Engineering Department, University of Central Florida, Orlando, Florida, USA
| | - Daniel Balzani
- Chair of Continuum Mechanics, Ruhr University Bochum, Bochum, Germany
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2
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Muench S, Roellig M, Balzani D. A new method for the in vivo identification of degenerated material property ranges of the human eye: feasibility analysis based on synthetic data. Biomech Model Mechanobiol 2022; 21:401-418. [PMID: 34928468 PMCID: PMC8940849 DOI: 10.1007/s10237-021-01541-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 11/24/2021] [Indexed: 11/25/2022]
Abstract
This paper proposes a new method for in vivo and almost real-time identification of biomechanical properties of the human cornea based on non-contact tonometer data. Further goal is to demonstrate the method's functionality based on synthetic data serving as reference. For this purpose, a finite element model of the human eye is constructed to synthetically generate full-field displacements from different data sets with keratoconus-like degradations. Then, a new approach based on the equilibrium gap method combined with a mechanical morphing approach is proposed and used to identify the material parameters from virtual test data sets. In a further step, random absolute noise is added to the virtual test data to investigate the sensitivity of the new approach to noise. As a result, the proposed method shows a relevant accuracy in identifying material parameters based on full-field displacements. At the same time, the method turns out to work almost in real time (order of a few minutes on a regular workstation) and is thus much faster than inverse problems solved by typical forward approaches. On the other hand, the method shows a noticeable sensitivity to rather small noise amplitudes rendering the method not accurate enough for the precise identification of individual parameter values. However, analysis show that the accuracy is sufficient for the identification of property ranges which might be related to diseased tissues. Thereby, the proposed approach turns out promising with view to diagnostic purposes.
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Affiliation(s)
- Stefan Muench
- Department of Testing of Electronics and Optical Methods, Fraunhofer Institute for Ceramic Technologies and Systems IKTS, Dresden, Germany
| | - Mike Roellig
- Department of Testing of Electronics and Optical Methods, Fraunhofer Institute for Ceramic Technologies and Systems IKTS, Dresden, Germany
| | - Daniel Balzani
- Chair of Continuum Mechanics, Ruhr University Bochum, Bochum, Germany.
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Rahman T, Moulin K, Perotti LE. Cardiac Diffusion Tensor Biomarkers of Chronic Infarction Based on In Vivo Data. APPLIED SCIENCES-BASEL 2022; 12. [PMID: 36032414 PMCID: PMC9408809 DOI: 10.3390/app12073512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
In vivo cardiac diffusion tensor imaging (cDTI) data were acquired in
swine subjects six to ten weeks post-myocardial infarction (MI) to identify
microstructural-based biomarkers of MI. Diffusion tensor invariants, diffusion
tensor eigenvalues, and radial diffusivity (RD) are evaluated in the infarct,
border, and remote myocardium, and compared with extracellular volume fraction
(ECV) and native T1 values. Additionally, to aid the interpretation of the
experimental results, the diffusion of water molecules was numerically simulated
as a function of ECV. Finally, findings based on in vivo measures were confirmed
using higher-resolution and higher signal-to-noise data acquired ex vivo in the
same subjects. Mean diffusivity, diffusion tensor eigenvalues, and RD increased
in the infarct and border regions compared to remote myocardium, while
fractional anisotropy decreased. Secondary (e2) and tertiary
(e3) eigenvalues increased more significantly than the primary
eigenvalue in the infarct and border regions. These findings were confirmed by
the diffusion simulations. Although ECV presented the largest increase in
infarct and border regions, e2, e3, and RD increased the
most among non-contrast-based biomarkers. RD is of special interest as it
summarizes the changes occurring in the radial direction and may be more robust
than e2 or e3 alone.
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Affiliation(s)
- Tanjib Rahman
- Department of Mechanical and Aerospace Engineering,
University of Central Florida, Orlando, FL 32816, USA
| | - Kévin Moulin
- CREATIS Laboratory, Univ. Lyon, UJM-Saint-Etienne, INSA,
CNRS UMR 5520, INSERM, 69100 Villeurbanne, France
- Department of Radiology, University Hospital Saint-Etienne,
42270 Saint-Priest-en-Jarez, France
| | - Luigi E. Perotti
- Department of Mechanical and Aerospace Engineering,
University of Central Florida, Orlando, FL 32816, USA
- Correspondence:
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Xu J, Wong TC, Simon MA, Brigham JC. A clinically applicable strategy to estimate the in vivo distribution of mechanical material properties of the right ventricular wall. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2022; 38:e3548. [PMID: 34724355 DOI: 10.1002/cnm.3548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 10/27/2021] [Indexed: 06/13/2023]
Abstract
A clinically applicable approach to estimate the in vivo mechanical material properties of the heart wall is presented. This optimization-based inverse estimation approach applies a shape-based objective functional combined with rigid body registration and incremental parameterization of heterogeneity to use standard clinical imaging data along with simplified representations of cardiac function to provide consistent and physically meaningful solution estimates. The capability of the inverse estimation algorithm is evaluated through application to two clinically obtained human datasets to estimate the passive elastic mechanical properties of the heart wall, with an emphasis on the right ventricle. One dataset corresponded to a subject with normal heart function, while the other corresponded to a subject with severe pulmonary hypertension, and therefore expected to have a substantially stiffer right ventricle. Patient-specific pressure-driven bi-ventricle finite element analysis was used as the forward model and the endocardial surface of the right ventricle was used as the target data for the inverse problem. By using the right ventricle alone as the target of the inverse problem the relative sensitivity of the objective function to the right ventricle properties is increased. The method was able to identify material properties to accurately match the corresponding shape of the simplified forward model to the clinically obtained target data, and the properties obtained for the example cases are consistent with the clinical expectation for the right ventricle. Additionally, the material property estimates indicate significant heterogeneity in the heart wall for both subjects, and more so for the subject with pulmonary hypertension.
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Affiliation(s)
- Jing Xu
- Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Timothy C Wong
- UPMC Cardiovascular Magnetic Resonance Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA
| | - Marc A Simon
- Department of Medicine, Division of Cardiology, University of California, San Francisco, California, USA
| | - John C Brigham
- Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Motevalli M, Uhlemann J, Stranghöner N, Balzani D. The Elastic Share of Inelastic Stress-Strain Paths of Woven Fabrics. MATERIALS (BASEL, SWITZERLAND) 2020; 13:ma13194243. [PMID: 32977638 PMCID: PMC7579112 DOI: 10.3390/ma13194243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 09/16/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
Manifold variations of the mechanical behavior of structural woven fabrics appear in the first load cycles. Nevertheless, invariable states, i.e., mechanically saturated states, can be approached by multiple monotonous load cycle biaxial tests. In a state acceptably close to the ideal saturated state, the stress-strain paths reveal the elastic share of the initially inelastic stress-strain paths of woven fabrics. In this paper, the mechanical saturation behavior of two types of PTFE-coated woven glass fiber fabrics is examined and compared to the recently reported saturation behavior of a PVC-coated polyester fabric. With the help of the saturation test data, an extrapolation function is developed that facilitates an estimation of late cycle stiffness behavior based on measured early cycle behavior. Furthermore, the considerable impact of late cycle properties on structural analyses is shown exemplarily in the numerical simulation of a prestressed fabric structure by comparing results achieved from late and early load cycle stiffness parameters.
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Affiliation(s)
- Mehran Motevalli
- Chair of Continuum Mechanics, Ruhr-University Bochum, D-44801 Bochum, Germany;
| | - Jörg Uhlemann
- Institute for Metal and Lightweight Structures, University of Duisburg-Essen, 45117 Essen, Germany; (J.U.); (N.S.)
| | - Natalie Stranghöner
- Institute for Metal and Lightweight Structures, University of Duisburg-Essen, 45117 Essen, Germany; (J.U.); (N.S.)
| | - Daniel Balzani
- Chair of Continuum Mechanics, Ruhr-University Bochum, D-44801 Bochum, Germany;
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Real-time 3T MRI-guided cardiovascular catheterization in a porcine model using a glass-fiber epoxy-based guidewire. PLoS One 2020; 15:e0229711. [PMID: 32102092 PMCID: PMC7043930 DOI: 10.1371/journal.pone.0229711] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 02/13/2020] [Indexed: 11/19/2022] Open
Abstract
PURPOSE Real-time magnetic resonance imaging (MRI) is a promising alternative to X-ray fluoroscopy for guiding cardiovascular catheterization procedures. Major challenges, however, include the lack of guidewires that are compatible with the MRI environment, not susceptible to radiofrequency-induced heating, and reliably visualized. Preclinical evaluation of new guidewire designs has been conducted at 1.5T. Here we further evaluate the safety (device heating), device visualization, and procedural feasibility of 3T MRI-guided cardiovascular catheterization using a novel MRI-visible glass-fiber epoxy-based guidewire in phantoms and porcine models. METHODS To evaluate device safety, guidewire tip heating (GTH) was measured in phantom experiments with different combinations of catheters and guidewires. In vivo cardiovascular catheterization procedures were performed in both healthy (N = 5) and infarcted (N = 5) porcine models under real-time 3T MRI guidance using a glass-fiber epoxy-based guidewire. The times for each procedural step were recorded separately. Guidewire visualization was assessed by measuring the dimensions of the guidewire-induced signal void and contrast-to-noise ratio (CNR) between the guidewire tip signal void and the blood signal in real-time gradient-echo MRI (specific absorption rate [SAR] = 0.04 W/kg). RESULTS In the phantom experiments, GTH did not exceed 0.35°C when using the real-time gradient-echo sequence (SAR = 0.04 W/kg), demonstrating the safety of the glass-fiber epoxy-based guidewire at 3T. The catheter was successfully placed in the left ventricle (LV) under real-time MRI for all five healthy subjects and three out of five infarcted subjects. Signal void dimensions and CNR values showed consistent visualization of the glass-fiber epoxy-based guidewire in real-time MRI. The average time (minutes:seconds) for the catheterization procedure in all subjects was 4:32, although the procedure time varied depending on the subject's specific anatomy (standard deviation = 4:41). CONCLUSIONS Real-time 3T MRI-guided cardiovascular catheterization using a new MRI-visible glass-fiber epoxy-based guidewire is feasible in terms of visualization and guidewire navigation, and safe in terms of radiofrequency-induced guidewire tip heating.
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Avazmohammadi R, Soares JS, Li DS, Raut SS, Gorman RC, Sacks MS. A Contemporary Look at Biomechanical Models of Myocardium. Annu Rev Biomed Eng 2019; 21:417-442. [PMID: 31167105 PMCID: PMC6626320 DOI: 10.1146/annurev-bioeng-062117-121129] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Understanding and predicting the mechanical behavior of myocardium under healthy and pathophysiological conditions are vital to developing novel cardiac therapies and promoting personalized interventions. Within the past 30 years, various constitutive models have been proposed for the passive mechanical behavior of myocardium. These models cover a broad range of mathematical forms, microstructural observations, and specific test conditions to which they are fitted. We present a critical review of these models, covering both phenomenological and structural approaches, and their relations to the underlying structure and function of myocardium. We further explore the experimental and numerical techniques used to identify the model parameters. Next, we provide a brief overview of continuum-level electromechanical models of myocardium, with a focus on the methods used to integrate the active and passive components of myocardial behavior. We conclude by pointing to future directions in the areas of optimal form as well as new approaches for constitutive modeling of myocardium.
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Affiliation(s)
- Reza Avazmohammadi
- James T. Willerson Center for Cardiovascular Modeling and Simulation, Oden Institute for Computational Engineering and Sciences, and Department of Biomedical Engineering, University of Texas, Austin, Texas 78712, USA;
| | - João S Soares
- James T. Willerson Center for Cardiovascular Modeling and Simulation, Oden Institute for Computational Engineering and Sciences, and Department of Biomedical Engineering, University of Texas, Austin, Texas 78712, USA;
- Department of Mechanical and Nuclear Engineering, Virginia Commonwealth University, Richmond, Virginia 23284, USA
| | - David S Li
- James T. Willerson Center for Cardiovascular Modeling and Simulation, Oden Institute for Computational Engineering and Sciences, and Department of Biomedical Engineering, University of Texas, Austin, Texas 78712, USA;
| | - Samarth S Raut
- James T. Willerson Center for Cardiovascular Modeling and Simulation, Oden Institute for Computational Engineering and Sciences, and Department of Biomedical Engineering, University of Texas, Austin, Texas 78712, USA;
| | - Robert C Gorman
- Gorman Cardiovascular Research Group, Smilow Center for Translational Research, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Michael S Sacks
- James T. Willerson Center for Cardiovascular Modeling and Simulation, Oden Institute for Computational Engineering and Sciences, and Department of Biomedical Engineering, University of Texas, Austin, Texas 78712, USA;
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Direct and inverse identification of constitutive parameters from the structure of soft tissues. Part 1: micro- and nanostructure of collagen fibers. Biomech Model Mechanobiol 2018; 17:1011-1036. [DOI: 10.1007/s10237-018-1009-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2017] [Accepted: 02/13/2018] [Indexed: 12/17/2022]
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9
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Perotti LE, Magrath P, Verzhbinsky IA, Aliotta E, Moulin K, Ennis DB. Microstructurally Anchored Cardiac Kinematics by Combining In Vivo DENSE MRI and cDTI. FUNCTIONAL IMAGING AND MODELING OF THE HEART : ... INTERNATIONAL WORKSHOP, FIMH ..., PROCEEDINGS. FIMH 2017; 10263:381-391. [PMID: 29450409 DOI: 10.1007/978-3-319-59448-4_36] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Metrics of regional myocardial function can detect the onset of cardiovascular disease, evaluate the response to therapy, and provide mechanistic insight into cardiac dysfunction. Knowledge of local myocardial microstructure is necessary to distinguish between isotropic and anisotropic contributions of local deformation and to quantify myofiber kinematics, a microstructurally anchored measure of cardiac function. Using a computational model we combine in vivo cardiac displacement and diffusion tensor data to evaluate pointwise the deformation gradient tensor and isotropic and anisotropic deformation invariants. In discussing the imaging methods and the model construction, we identify potential improvements to increase measurement accuracy. We conclude by demonstrating the applicability of our method to compute myofiber strain in five healthy volunteers.
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Affiliation(s)
- Luigi E Perotti
- Department of Radiological Sciences, University of California, Los Angeles, USA.,Department of Bioengineering, University of California, Los Angeles, USA
| | - Patrick Magrath
- Department of Radiological Sciences, University of California, Los Angeles, USA.,Department of Bioengineering, University of California, Los Angeles, USA
| | - Ilya A Verzhbinsky
- Department of Radiological Sciences, University of California, Los Angeles, USA
| | - Eric Aliotta
- Department of Radiological Sciences, University of California, Los Angeles, USA.,Department of Biomedical Physics IDP, University of California, Los Angeles, USA
| | - Kévin Moulin
- Department of Radiological Sciences, University of California, Los Angeles, USA
| | - Daniel B Ennis
- Department of Radiological Sciences, University of California, Los Angeles, USA.,Department of Bioengineering, University of California, Los Angeles, USA.,Department of Biomedical Physics IDP, University of California, Los Angeles, USA
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