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González AL, Merder J, Andraczek K, Brose U, Filipiak M, Harpole WS, Hillebrand H, Jackson MC, Jochum M, Leroux SJ, Nessel MP, Onstein RE, Paseka R, Perry GLW, Rugenski A, Sitters J, Sperfeld E, Striebel M, Zandona E, Aymes JC, Blanckaert A, Bluhm SL, Doi H, Eisenhauer N, Farjalla VF, Hood J, Kratina P, Labonne J, Lovelock CE, Moody EK, Mozsár A, Nash L, Pollierer MM, Potapov A, Romero GQ, Roussel JM, Scheu S, Scheunemann N, Seeber J, Steinwandter M, Susanti WI, Tiunov A, Dézerald O. StoichLife: A Global Dataset of Plant and Animal Elemental Content. Sci Data 2025; 12:569. [PMID: 40180992 PMCID: PMC11968889 DOI: 10.1038/s41597-025-04852-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Accepted: 03/18/2025] [Indexed: 04/05/2025] Open
Abstract
The elemental content of life is a key trait shaping ecology and evolution, yet organismal stoichiometry has largely been studied on a case-by-case basis. This limitation has hindered our ability to identify broad patterns and mechanisms across taxa and ecosystems. To address this, we present StoichLife, a global dataset of 28,049 records from 5,876 species spanning terrestrial, freshwater, and marine realms. Compiled from published and unpublished sources, StoichLife documents elemental content and stoichiometric ratios (%C, %N, %P, C:N, C:P, and N:P) for individual plants and animals. The dataset is standardized and, where available, includes information on taxonomy, habitat, body mass (for animals), geography, and environmental conditions such as temperature, solar radiation, and nutrient availability. By providing an unprecedented breadth of organismal stoichiometry, StoichLife enables the exploration of global patterns, ecological and evolutionary drivers, and context-dependent variations. This resource advances our understanding of the chemical makeup of life and its responses to environmental change, supporting progress in ecological stoichiometry and related fields.
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Affiliation(s)
- Angélica L González
- Department of Biology, Rutgers University, Camden, 08103, USA.
- Center for Computational and Integrative Biology, Rutgers University, Camden, 08103, USA.
| | - Julian Merder
- Department of Global Ecology, Carnegie Institution for Science, Stanford, 94305, USA
| | - Karl Andraczek
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Department of Life Sciences, Systematic Botany and Functional Biodiversity, University Leipzig, 04103, Leipzig, Germany
| | - Ulrich Brose
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biodiversity, Friedrich-Schiller-University Jena, Jena, 07743, Germany
| | - Michał Filipiak
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Kraków, 30-387, Poland
| | - W Stanley Harpole
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Helmholtz Center for Environmental Research - UFZ, Department of Physiological Diversity, Leipzig, 04318, Germany
- Martin Luther University Halle-Wittenberg, Halle (Saale), 06108, Germany
| | - Helmut Hillebrand
- Institute for Chemistry and Biology of the Marine Environment (ICBM), School of Mathematics and Science, Carl von Ossietzky Universität Oldenburg, Oldenburg, 26129, Germany
- Helmholtz-Institute for Functional Marine Biodiversity at the University of Oldenburg (HIFMB), Oldenburg, 26129, Germany
- Alfred Wegener Institute, Helmholtz-Centre for Polar and Marine Research (AWI), Bremerhaven, 27570, Germany
| | | | - Malte Jochum
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Department of Global Change Ecology, Biocenter, University of Würzburg, Würzburg, 97074, Germany
- Institute of Biology, Leipzig University, Leipzig, 04103, Germany
| | - Shawn J Leroux
- Department of Biology, Memorial University of Newfoundland, St. John's, NL A1B 3X9, Canada
| | - Mark P Nessel
- Center for Computational and Integrative Biology, Rutgers University, Camden, 08103, USA
- Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, Oklahoma, 74078, USA
| | - Renske E Onstein
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Naturalis Biodiversity Center, Leiden, 2333CR, The Netherlands
| | - Rachel Paseka
- ASRC Federal / NASA Headquarters, Washington, DC, 20546, USA
| | - George L W Perry
- School of Environment, University of Auckland, Auckland, 1142, New Zealand
| | - Amanda Rugenski
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Judith Sitters
- Department of Biology, Vrije Universiteit Brussel, Brussels, 1050, Belgium
- B-WARE Research Centre, Nijmegen, 6525 ED, The Netherlands
| | - Erik Sperfeld
- German Environment Agency, Section IV 2.5, Berlin, 12307, Germany
- University of Greifswald, Zoological Institute and Museum, Greifswald, 17489, Germany
| | - Maren Striebel
- Institute for Chemistry and Biology of the Marine Environment (ICBM), School of Mathematics and Science, Carl von Ossietzky Universität Oldenburg, Oldenburg, 26129, Germany
| | - Eugenia Zandona
- Department of Ecology, Rio de Janeiro State University, Rio de Janeiro, 20550-013, Brazil
| | - Jean-Christophe Aymes
- UMR INRAE-UPPA, ECOBIOP, Université de Pau et Des Pays De l'Adour, Saint-Pée-sur-Nivelle, Pau, 64310, France
| | - Alice Blanckaert
- School of Environment, The University of Queensland, St Lucia, QLD, 4072, Australia
| | - Sarah L Bluhm
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Hideyuki Doi
- Graduate School of Informatics, Kyoto University, Kyoto, 606-8501, Japan
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, 04103, Germany
| | - Vinicius F Farjalla
- Department of Ecology, Federal University of Rio de Janeiro, Rio de Janeiro, 21941-590, Brazil
| | - James Hood
- Aquatic Ecology Laboratory, Department of Evolution, Ecology, and Organismal Behavior, The Ohio State University, Columbus, OH, 43212, USA
- Translational Data Analytics Institute, The Ohio State University, Columbus, OH, 43212, USA
| | - Pavel Kratina
- Centre for Biodiversity and Sustainability, School of Biological and Behavioural Sciences, Queen Mary University of London, London, E1 4NS, UK
| | - Jacques Labonne
- UMR INRAE-UPPA, ECOBIOP, Université de Pau et Des Pays De l'Adour, Saint-Pée-sur-Nivelle, Pau, 64310, France
| | - Catherine E Lovelock
- School of Environment, The University of Queensland, St Lucia, QLD, 4072, Australia
| | - Eric K Moody
- Department of Biology, Middlebury College, Middlebury, VT, 05753, USA
| | - Attila Mozsár
- HUN-REN Balaton Limnological Research Institute, Tihany, 8237, Hungary
| | - Liam Nash
- Centre for Biodiversity and Sustainability, School of Biological and Behavioural Sciences, Queen Mary University of London, London, E1 4NS, UK
| | - Melanie M Pollierer
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Anton Potapov
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
- Soil Zoology Division, Senckenberg Museum of Natural History Gorlitz, Görlitz, Germany
| | - Gustavo Q Romero
- Laboratory of Multitrophic Interactions and Biodiversity, Department of Animal Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Sao Paulo, 13083-865, Brazil
| | | | - Stefan Scheu
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
- Centre of Biodiversity and Sustainable Land Use, University of Göttingen, Göttingen, 37077, Germany
| | - Nicole Scheunemann
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
- Department of Soil Zoology, Section Mesofauna, Senckenberg Museum for Natural History Goerlitz, Goerlitz, 02826, Germany
| | - Julia Seeber
- Institute for Alpine Environment, Eurac Research, Bozen/Bolzano, 39100, Italy
- Department of Ecology, Universität Innsbruck, Innsbruck, 6020, Austria
| | | | - Winda Ika Susanti
- Department of Animal Ecology, J.-F. Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, 37073, Germany
| | - Alexei Tiunov
- A.N. Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences, Moscow, 119071, Russia
- Southern Branch of the Joint Russian-Vietnamese Tropical Research and Technological Center, Ho Chi Minh City, 700000, Vietnam
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2
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Peller T, Altermatt F. Invasive species drive cross-ecosystem effects worldwide. Nat Ecol Evol 2024; 8:1087-1097. [PMID: 38503866 DOI: 10.1038/s41559-024-02380-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 02/13/2024] [Indexed: 03/21/2024]
Abstract
Invasive species are pervasive around the world and have profound impacts on the ecosystem they invade. Invasive species, however, can also have impacts beyond the ecosystem they invade by altering the flow of non-living materials (for example, nutrients or chemicals) or movement of organisms across the boundaries of the invaded ecosystem. Cross-ecosystem interactions via spatial flows are ubiquitous in nature, for example, connecting forests and lakes, grasslands and rivers, and coral reefs and the deep ocean. Yet, we have a limited understanding of the cross-ecosystem impacts invasive species have relative to their local effects. By synthesizing emerging evidence, here we demonstrate the cross-ecosystem impacts of invasive species as a ubiquitous phenomenon that influences biodiversity and ecosystem functioning around the world. We identify three primary ways by which invasive species have cross-ecosystem effects: first, by altering the magnitude of spatial flows across ecosystem boundaries; second, by altering the quality of spatial flows; and third, by introducing novel spatial flows. Ultimately, the strong impacts invasive species can drive across ecosystem boundaries suggests the need for a paradigm shift in how we study and manage invasive species around the world, expanding from a local to a cross-ecosystem perspective.
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Affiliation(s)
- Tianna Peller
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.
- Department of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.
| | - Florian Altermatt
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.
- Department of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.
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3
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Bollinger E, Zubrod JP, Englert D, Graf N, Weisner O, Kolb S, Schäfer RB, Entling MH, Schulz R. The influence of season, hunting mode, and habitat specialization on riparian spiders as key predators in the aquatic-terrestrial linkage. Sci Rep 2023; 13:22950. [PMID: 38135811 PMCID: PMC10746743 DOI: 10.1038/s41598-023-50420-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 12/19/2023] [Indexed: 12/24/2023] Open
Abstract
Freshwater ecosystems subsidize riparian zones with high-quality nutrients via the emergence of aquatic insects. Spiders are dominant consumers of these insect subsidies. However, little is known about the variation of aquatic insect consumption across spiders of different hunting modes, habitat specializations, seasons, and systems. To explore this, we assembled a large stable isotope dataset (n > 1000) of aquatic versus terrestrial sources and six spider species over four points in time adjacent to a lotic and a lentic system. The spiders represent three hunting modes each consisting of a wetland specialist and a habitat generalist. We expected that specialists would feed more on aquatic prey than their generalist counterparts. Mixing models showed that spiders' diet consisted of 17-99% of aquatic sources, with no clear effect of habitat specialization. Averaged over the whole study period, web builders (WB) showed the highest proportions (78%) followed by ground hunters (GH, 42%) and vegetation hunters (VH, 31%). Consumption of aquatic prey was highest in June and August, which is most pronounced in GH and WBs, with the latter feeding almost entirely on aquatic sources during this period. Additionally, the elevated importance of high-quality lipids from aquatic origin during fall is indicated by elemental analyses pointing to an accumulation of lipids in October, which represent critical energy reserves during winter. Consequently, this study underlines the importance of aquatic prey irrespective of the habitat specialization of spiders. Furthermore, it suggests that energy flows vary substantially between spider hunting modes and seasons.
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Affiliation(s)
- Eric Bollinger
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany.
| | - Jochen P Zubrod
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
- Zubrod Environmental Data Science, Ostring 24a, D-76829, Landau, Germany
| | - Dominic Englert
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Nadin Graf
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Oliver Weisner
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Sebastian Kolb
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Ralf B Schäfer
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Martin H Entling
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
| | - Ralf Schulz
- iES Landau, Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, Fortstraße 7, D-76829, Landau, Germany
- Eußerthal Ecosystem Research Station, RPTU Kaiserslautern-Landau, Birkenthalstraße 13, D-76857, Eußerthal, Germany
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4
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Britton JR. Contemporary perspectives on the ecological impacts of invasive freshwater fishes. JOURNAL OF FISH BIOLOGY 2023; 103:752-764. [PMID: 36207758 DOI: 10.1111/jfb.15240] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
Abstract
Introductions of non-native freshwater fish continue to increase globally, although only a small proportion of these introductions will result in an invasion. These invasive populations can cause ecological impacts in the receiving ecosystem through processes including increased competition and predation pressure, genetic introgression and the transmission of non-native pathogens. Definitions of ecological impact emphasize that shifts in the strength of these processes are insufficient for characterizing impact alone and, instead, must be associated with a quantifiable decline of biological and/or genetic diversity and lead to a measurable loss of diversity or change in ecosystem functioning. Assessments of ecological impact should thus consider the multiple processes and effects that potentially occur from invasive fish populations where, for example, impacts of invasive common carp Cyprinus carpio populations are through a combination of bottom-up and top-down processes that, in entirety, cause shifts in lake stable states and decreased species richness and/or abundances in the biotic communities. Such far-reaching ecological impacts also align to contemporary definitions of ecosystem collapse, given they involve substantial and persistent declines in biodiversity and ecosystem functions that cannot be recovered unaided. Thus, while not all introduced freshwater fishes will become invasive, those species that do develop invasive populations can cause substantial ecological impacts, where some of the impacts on biodiversity and ecosystem functioning might be sufficiently harmful to be considered as contributing to ecosystem collapse.
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Affiliation(s)
- John Robert Britton
- Department of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Poole, UK
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5
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Glassic HC, Guy CS, Tronstad LM, Lujan DR, Briggs MA, Albertson LK, Koel TM. Invasive predator diet plasticity has implications for native fish conservation and invasive species suppression. PLoS One 2023; 18:e0279099. [PMID: 36827303 PMCID: PMC9956068 DOI: 10.1371/journal.pone.0279099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 11/29/2022] [Indexed: 02/25/2023] Open
Abstract
Diet plasticity is a common behavior exhibited by piscivores to sustain predator biomass when preferred prey biomass is reduced. Invasive piscivore diet plasticity could complicate suppression success; thus, understanding invasive predator consumption is insightful to meeting conservation targets. Here, we determine if diet plasticity exists in an invasive apex piscivore and whether plasticity could influence native species recovery benchmarks and invasive species suppression goals. We compared diet and stable isotope signatures of invasive lake trout and native Yellowstone cutthroat trout (cutthroat trout) from Yellowstone Lake, Wyoming, U.S.A. as a function of no, low-, moderate-, and high-lake trout density states. Lake trout exhibited plasticity in relation to their density; consumption of cutthroat trout decreased 5-fold (diet proportion from 0.89 to 0.18) from low- to high-density state. During the high-density state, lake trout switched to amphipods, which were also consumed by cutthroat trout, resulting in high diet overlap (Schoener's index value, D = 0.68) between the species. As suppression reduced lake trout densities (moderate-density state), more cutthroat trout were consumed (proportion of cutthroat trout = 0.42), and diet overlap was released between the species (D = 0.30). A shift in lake trout δ13C signatures from the high- to the moderate-density state also corroborated increased consumption of cutthroat trout and lake trout diet plasticity. Observed declines in lake trout are not commensurate with expected cutthroat trout recovery due to lake trout diet plasticity. The abundance of the native species in need of conservation may take longer to recover due to the diet plasticity of the invasive species. The changes observed in diet, diet overlap, and isotopes associated with predator suppression provides more insight into conservation and suppression dynamics than using predator and prey biomass alone. By understanding these dynamics, we can better prepare conservation programs for potential feedbacks caused by invasive species suppression.
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Affiliation(s)
- Hayley C. Glassic
- Montana Cooperative Fishery Research Unit, Department of Ecology, Montana State University, Bozeman, Montana, United States of America,* E-mail:
| | - Christopher S. Guy
- Department of Ecology, U.S. Geological Survey, Montana Cooperative Fishery Research Unit, Montana State University, Bozeman, Montana, United States of America
| | - Lusha M. Tronstad
- Wyoming Natural Diversity Database, University of Wyoming, Laramie, Wyoming, United States of America
| | - Dominique R. Lujan
- Department of Zoology and Physiology, University of Wyoming, Laramie, Wyoming, United States of America
| | - Michelle A. Briggs
- Montana Cooperative Fishery Research Unit, Department of Ecology, Montana State University, Bozeman, Montana, United States of America,Department of Ecology, Montana State University, Bozeman, Montana, United States of America
| | - Lindsey K. Albertson
- Department of Ecology, Montana State University, Bozeman, Montana, United States of America
| | - Todd M. Koel
- U.S. National Park Service, Yellowstone Center for Resources, Native Fish Conservation Program, Yellowstone National Park, Wyoming, United States of America
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6
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Smith RA, Yurkowski DJ, Parkinson KJL, Fort J, Hennin HL, Gilchrist HG, Hobson KA, Mallory ML, Danielsen J, Garbus SE, Hanssen SA, Jónsson JE, Latty CJ, Magnúsdóttir E, Moe B, Parsons GJ, Sonne C, Tertitski G, Love OP. Environmental and life-history factors influence inter-colony multidimensional niche metrics of a breeding Arctic marine bird. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 796:148935. [PMID: 34274678 DOI: 10.1016/j.scitotenv.2021.148935] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 07/05/2021] [Accepted: 07/05/2021] [Indexed: 06/13/2023]
Abstract
Human industrialization has resulted in rapid climate change, leading to wide-scale environmental shifts. These shifts can modify food web dynamics by altering the abundance and distribution of primary producers (ice algae and phytoplankton), as well as animals at higher trophic levels. Methylmercury (MeHg) is a neuro-endocrine disrupting compound which biomagnifies in animals as a function of prey choice, and as such bioavailability is affected by altered food web dynamics and adds an important risk-based dimension in studies of foraging ecology. Multidimensional niche dynamics (MDND; δ13C, δ15N, THg; total mercury) were determined among breeding common eider (Somateria mollissima) ducks sampled from 10 breeding colonies distributed across the circumpolar Arctic and subarctic. Results showed high variation in MDND among colonies as indicated by niche size and ranges in δ13C, δ15N and THg values in relation to spatial differences in primary production inferred from sea-ice presence and colony migratory status. Colonies with higher sea-ice cover during the pre-incubation period had higher median colony THg, δ15N, and δ13C. Individuals at migratory colonies had relatively higher THg and δ15N, and lower δ13C, suggesting a higher trophic position and a greater reliance on phytoplankton-based prey. It was concluded that variation in MDND exists among eider colonies which influenced individual blood THg concentrations. Further exploration of spatial ecotoxicology and MDND at each individual site is important to examine the relationships between anthropogenic activities, foraging behaviour, and the related risks of contaminant exposure at even low, sub-lethal concentrations that may contribute to deleterious effects on population stability over time. Overall, multidimensional niche analysis that incorporates multiple isotopic and contaminant metrics could help identify those populations at risk to rapidly altered food web dynamics.
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Affiliation(s)
- Reyd A Smith
- University of Windsor, Windsor, Ontario N9B 3P4, Canada.
| | | | | | - Jérôme Fort
- Littoral, Environnement et Sociétés (LIENSs), UMR 7266 CNRS - La Rochelle University, La Rochelle FR-17000, France
| | - Holly L Hennin
- Environment and Climate Change Canada, Ottawa, Ontario K0A 1H0, Canada
| | - H Grant Gilchrist
- Environment and Climate Change Canada, Ottawa, Ontario K0A 1H0, Canada
| | | | - Mark L Mallory
- cadia University, Wolfville, Nova Scotia B4P 2R6, Canada
| | | | | | | | - Jón Einar Jónsson
- University of Iceland's Research Centre at Snæfellsnes, Hafnargata 3, 340 Stykkishólmur, Iceland
| | - Christopher J Latty
- Arctic National Wildlife Refuge, U.S. Fish and Wildlife Service, Fairbanks, AK 99701, United States
| | - Ellen Magnúsdóttir
- University of Iceland's Research Centre at Snæfellsnes, Hafnargata 3, 340 Stykkishólmur, Iceland
| | - Børge Moe
- Norwegian Institute for Nature Research, Tromsø N-9296, Norway
| | - Glen J Parsons
- Nova Scotia Department of Lands and Forestry, Kentville, Nova Scotia B4N 4E5, Canada
| | | | - Grigori Tertitski
- Institute of Geography of the Russian Academy of Sciences, Moscow 119017, Russia
| | - Oliver P Love
- University of Windsor, Windsor, Ontario N9B 3P4, Canada
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7
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Samraoui B, Samraoui F, Al-Misned FA, El-Serehy HA, Adler PH. Ecological determinants of black fly assemblages of relict mountain streams in northeastern Algeria, plus new records (Diptera: Simuliidae). Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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8
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Cetinić KA, Previšić A, Rožman M. Holo- and hemimetabolism of aquatic insects: Implications for a differential cross-ecosystem flux of metals. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 277:116798. [PMID: 33677367 DOI: 10.1016/j.envpol.2021.116798] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 01/27/2021] [Accepted: 02/17/2021] [Indexed: 06/12/2023]
Abstract
Increased metal concentrations in aquatic habitats come as a result of both anthropogenic and natural sources. Emerging aquatic insects that play an indispensable role in these environments, transferring resources and energy to higher trophic levels in both aquatic and terrestrial habitats, may inadvertently also act as biovectors for metals and other contaminants. This study measured levels of 22 different metals detected in biofilm, aquatic and terrestrial life stages of Trichoptera and Odonata, as well as riparian spiders, to examine the uptake and transfer from freshwater to terrestrial ecosystems. We show that emerging insects transfer metals from aquatic to terrestrial ecosystems, however with large losses observed on the boundary of these two environments. Significantly lower concentrations of most metals in adult insects were observed in both hemimetabolous (Odonata) and holometabolous insect orders (Trichoptera). In holometabolous Trichoptera, however, this difference was greater between aquatic life stages (larvae to pupae) compared to that between pupae and adults. Trophic transfer may have also played a role in decreasing metal concentrations, as metal concentrations generally adhered to the following pattern: biofilm > aquatic insects > terrestrial invertebrates. Exceptions to this observation were detected with a handful of essential (Cu, Zn, Se) and non-essential metals (Cd, Ag), which measured higher concentrations in adult aquatic insects compared to their larval counterparts, as well as in aquatic and terrestrial predators compared to their prey. Overall, all metals were found to be bioavailable and biotransferred from contaminated waters to terrestrial invertebrates to some degree, suggesting that risks associated with metal-contaminated freshwaters could extend to terrestrial systems through the emergence of these potential invertebrate biovectors.
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Affiliation(s)
| | - Ana Previšić
- Department of Biology, Zoology, Faculty of Science, University of Zagreb, Zagreb, Croatia
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9
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Dahmani S, Colotte V, Girard V, Ouni S. Learning emotions latent representation with CVAE for text-driven expressive audiovisual speech synthesis. Neural Netw 2021; 141:315-329. [PMID: 33957381 DOI: 10.1016/j.neunet.2021.04.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 03/21/2021] [Accepted: 04/15/2021] [Indexed: 10/21/2022]
Abstract
Great improvement has been made in the field of expressive audiovisual Text-to-Speech synthesis (EAVTTS) thanks to deep learning techniques. However, generating realistic speech is still an open issue and researchers in this area have been focusing lately on controlling the speech variability. In this paper, we use different neural architectures to synthesize emotional speech. We study the application of unsupervised learning techniques for emotional speech modeling as well as methods for restructuring emotions representation to make it continuous and more flexible. This manipulation of the emotional representation should allow us to generate new styles of speech by mixing emotions. We first present our expressive audiovisual corpus. We validate the emotional content of this corpus with three perceptual experiments using acoustic only, visual only and audiovisual stimuli. After that, we analyze the performance of a fully connected neural network in learning characteristics specific to different emotions for the phone duration aspect and the acoustic and visual modalities. We also study the contribution of a joint and separate training of the acoustic and visual modalities in the quality of the generated synthetic speech. In the second part of this paper, we use a conditional variational auto-encoder (CVAE) architecture to learn a latent representation of emotions. We applied this method in an unsupervised manner to generate features of expressive speech. We used a probabilistic metric to compute the overlapping degree between emotions latent clusters to choose the best parameters for the CVAE. By manipulating the latent vectors, we were able to generate nuances of a given emotion and to generate new emotions that do not exist in our database. For these new emotions, we obtain a coherent articulation. We conducted four perceptual experiments to evaluate our findings.
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Affiliation(s)
- Sara Dahmani
- Université de Lorraine, CNRS, Inria, LORIA, F-54000 Nancy, France.
| | - Vincent Colotte
- Université de Lorraine, CNRS, Inria, LORIA, F-54000 Nancy, France.
| | - Valérian Girard
- Université de Lorraine, CNRS, Inria, LORIA, F-54000 Nancy, France.
| | - Slim Ouni
- Université de Lorraine, CNRS, Inria, LORIA, F-54000 Nancy, France.
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10
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Parkinson E, Lawson J, Tiegs SD. Artificial light at night at the terrestrial-aquatic interface: Effects on predators and fluxes of insect prey. PLoS One 2020; 15:e0240138. [PMID: 33031444 PMCID: PMC7544032 DOI: 10.1371/journal.pone.0240138] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 09/21/2020] [Indexed: 11/30/2022] Open
Abstract
The outcomes of species interactions–such as those between predators and prey–increasingly depend on environmental conditions that are modified by human activities. Light is among the most fundamental environmental parameters, and humans have dramatically altered natural light regimes across much of the globe through the addition of artificial light at night (ALAN). The consequences for species interactions, communities and ecosystems are just beginning to be understood. Here we present findings from a replicated field experiment that simulated over-the-water lighting in the littoral zone of a small lake. We evaluated responses by emergent aquatic insects and terrestrial invertebrate communities, and riparian predators (tetragnathid spiders). On average ALAN plots had 51% more spiders than control plots that were not illuminated. Mean individual spider body mass was greater in ALAN plots relative to controls, an effect that was strongly sex-dependent; mean male body mass was 34% greater in ALAN plots while female body mass was 176% greater. The average number of prey items captured in spider webs was 139% greater on ALAN mesocosms, an effect attributed to emergent aquatic insects. Non-metric multidimensional scaling and a multiple response permutation procedure revealed significantly different invertebrate communities captured in pan traps positioned in ALAN plots and controls. Control plots had taxonomic-diversity values (as H’) that were 58% greater than ALAN plots, and communities that were 83% more-even. We attribute these differences to the aquatic family Caenidae which was the dominant family across both light treatments, but was 818% more abundant in ALAN plots. Our findings show that when ALAN is located in close proximity to freshwater it can concentrate fluxes of emergent aquatic insects, and that terrestrial predators in the littoral zone can compound this effect and intercept resource flows, preventing them from entering the terrestrial realm.
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Affiliation(s)
- Elizabeth Parkinson
- Department of Biological Sciences, Oakland University, Rochester, Michigan, United States of America
| | - Justine Lawson
- Department of Biological Sciences, Oakland University, Rochester, Michigan, United States of America
| | - Scott D. Tiegs
- Department of Biological Sciences, Oakland University, Rochester, Michigan, United States of America
- * E-mail:
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11
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Motta L, Barrios-Garcia MN, Ballari SA, Rodriguez-Cabal MA. Cross-ecosystem impacts of non-native ungulates on wetland communities. Biol Invasions 2020. [DOI: 10.1007/s10530-020-02323-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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12
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McCue MD, Javal M, Clusella‐Trullas S, Le Roux JJ, Jackson MC, Ellis AG, Richardson DM, Valentine AJ, Terblanche JS. Using stable isotope analysis to answer fundamental questions in invasion ecology: Progress and prospects. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13327] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Marshall D. McCue
- Sable Systems International Las Vegas NV USA
- Department of Conservation Ecology and Entomology Centre for Invasion Biology Stellenbosch University Stellenbosch South Africa
| | - Marion Javal
- Department of Conservation Ecology and Entomology Centre for Invasion Biology Stellenbosch University Stellenbosch South Africa
| | - Susana Clusella‐Trullas
- Centre for Invasion Biology Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
| | - Johannes J. Le Roux
- Centre for Invasion Biology Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
- Department of Biological Sciences Macquarie University NSW Australia
| | - Michelle C. Jackson
- Centre for Invasion Biology Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
- Department of Life Sciences Imperial College London Ascot UK
- Department of Zoology Oxford University Oxford UK
| | - Allan G. Ellis
- Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
| | - David M. Richardson
- Centre for Invasion Biology Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
| | - Alex J. Valentine
- Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
| | - John S. Terblanche
- Department of Conservation Ecology and Entomology Centre for Invasion Biology Stellenbosch University Stellenbosch South Africa
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13
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Bessey C, Jarman SN, Stat M, Rohner CA, Bunce M, Koziol A, Power M, Rambahiniarison JM, Ponzo A, Richardson AJ, Berry O. DNA metabarcoding assays reveal a diverse prey assemblage for Mobula rays in the Bohol Sea, Philippines. Ecol Evol 2019; 9:2459-2474. [PMID: 30891193 PMCID: PMC6405500 DOI: 10.1002/ece3.4858] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2018] [Revised: 12/04/2018] [Accepted: 12/04/2018] [Indexed: 12/29/2022] Open
Abstract
Diet studies provide base understanding of trophic structure and are a valuable initial step for many fields of marine ecology, including conservation and fisheries biology. Considerable complexity in marine trophic structure can exist due to the presence of highly mobile species with long life spans. Mobula rays are highly mobile, large, planktivorous elasmobranchs that are frequently caught either directly or as bycatch in fisheries, which, combined with their conservative life history strategy, makes their populations susceptible to decline in intensely fished regions. Effective management of these iconic and vulnerable species requires an understanding of the diets that sustain them, which can be difficult to determine using conventional sampling methods. We use three DNA metabarcode assays to identify 44 distinct taxa from the stomachs (n = 101) of four sympatric Mobula ray species (Mobula birostris, Mobula tarapacana, Mobula japanica, and Mobula thurstoni) caught over 3 years (2013-2015) in a direct fishery off Bohol in the Philippines. The diversity and incidence of bony fishes observed in ray diets were unprecedented. Nevertheless, rays showed dietary overlap, with krill (Euphausia) dominating their diet. Our results provide a more detailed assessment of sympatric ray diets than was previously described and reveal the complexity that can exist in food webs at critical foraging habitats.
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Affiliation(s)
- Cindy Bessey
- Indian Oceans Marine Research CentreCommonwealth Scientific and Industrial Research Organization, Oceans and AtmosphereCrawleyWestern AustraliaAustralia
- Trace and Environmental DNA Laboratory, School of Molecular and Life SciencesCurtin UniversityPerthWestern AustraliaAustralia
- School of Plant Biology and the Oceans InstituteUniversity of Western AustraliaCrawleyWestern AustraliaAustralia
- Environomics Future Science Platform, Indian Oceans Marine Research CentreCommonwealth Scientific and Industrial Research OrganizationCrawleyWestern AustraliaAustralia
| | - Simon N. Jarman
- Trace and Environmental DNA Laboratory, School of Molecular and Life SciencesCurtin UniversityPerthWestern AustraliaAustralia
- Environomics Future Science Platform, Indian Oceans Marine Research CentreCommonwealth Scientific and Industrial Research OrganizationCrawleyWestern AustraliaAustralia
| | - Michael Stat
- Department of Biological SciencesMacquarie UniversityNorth RydeNew South WalesAustralia
| | | | - Michael Bunce
- Trace and Environmental DNA Laboratory, School of Molecular and Life SciencesCurtin UniversityPerthWestern AustraliaAustralia
| | - Adam Koziol
- Trace and Environmental DNA Laboratory, School of Molecular and Life SciencesCurtin UniversityPerthWestern AustraliaAustralia
| | - Matthew Power
- Trace and Environmental DNA Laboratory, School of Molecular and Life SciencesCurtin UniversityPerthWestern AustraliaAustralia
| | | | - Alessandro Ponzo
- Large Marine Vertebrates Research Institute PhilippinesBoholPhilippines
| | - Anthony J. Richardson
- Commonwealth Scientific and Industrial Research Organization, Oceans and AtmospheresBrisbaneQueenslandAustralia
- Centre for Applications in Natural Resource Mathematics, School of Mathematics and PhysicsUniversity of QueenslandSt LuciaQueenslandAustralia
| | - Oliver Berry
- Environomics Future Science Platform, Indian Oceans Marine Research CentreCommonwealth Scientific and Industrial Research OrganizationCrawleyWestern AustraliaAustralia
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14
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Zengeya T, Ivey P, Woodford DJ, Weyl O, Novoa A, Shackleton R, Richardson D, Van Wilgen B. Managing conflict-generating invasive species in South Africa: Challenges and trade-offs. ACTA ACUST UNITED AC 2017. [DOI: 10.4102/abc.v47i2.2160] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Abstract
Background: This paper reviewed the benefits and negative impacts of alien species that are currently listed in the Alien and Invasive Species Regulations of the National Environmental Management: Biodiversity Act (Act no 10 of 2004) and certain alien species that are not yet listed in the regulations for which conflicts of interest complicate management. Objectives: Specifically, it identified conflict-generating species, evaluated the causes and driving forces of these conflicts and assessed how the conflicts have affected management. Method: A simple scoring system was used to classify the alien species according to their relative degree of benefits and negative impacts. Conflict-generating species were then identified and further evaluated using an integrated cognitive hierarchy theory and risk perception framework to identify the value systems (intrinsic and economic) and risk perceptions associated with each conflict. Results: A total of 552 alien species were assessed. Most of the species were classified as inconsequential (55%) or destructive (29%). Beneficial (10%) and conflict-generating (6%) species made a minor contribution. The majority (46%) of the conflict cases were associated with more than one value system or both values and risk perception. The other conflicts cases were based on intrinsic (40%) and utilitarian (14%) value systems. Conclusions: Conflicts based on value and risk perceptions are inherently difficult to resolve because authorities need to balance the needs of different stakeholders while meeting the mandate of conserving the environment, ecosystem services and human well-being. This paper uses the identified conflict-generating species to highlight the challenges and trade-offs of managing invasive species in South Africa.
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15
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Jackson M, Wasserman R, Grey J, Ricciardi A, Dick J, Alexander M. Novel and Disrupted Trophic Links Following Invasion in Freshwater Ecosystems. ADV ECOL RES 2017. [DOI: 10.1016/bs.aecr.2016.10.006] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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16
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Ellender BR, Rivers-Moore NA, Coppinger CR, Bellingan TA, Weyl OLF. Towards using thermal stress thresholds to predict salmonid invasion potential. Biol Invasions 2016. [DOI: 10.1007/s10530-016-1244-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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