1
|
Wambulwa MC, Zhu GF, Luo YH, Wu ZY, Provan J, Cadotte MW, Jump AS, Wachira FN, Gao LM, Yi TS, Cai J, Wang H, Li DZ, Liu J. Incorporating Genetic Diversity to Optimize the Plant Conservation Network in the Third Pole. GLOBAL CHANGE BIOLOGY 2025; 31:e70122. [PMID: 40110964 PMCID: PMC11924320 DOI: 10.1111/gcb.70122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 12/24/2024] [Accepted: 02/19/2025] [Indexed: 03/22/2025]
Abstract
Climate change poses a significant threat to the survival of many species. Although protected areas can slow down biodiversity loss, they often lack systematic planning and do not integrate genetic diversity. Genetic diversity is a key prerequisite for species survival and the ability to tolerate new conditions. Using population genetic and distribution data from 96 plant species in the Third Pole (encompassing the Tibetan Plateau and adjacent mountains), we mapped patterns of genetic diversity, projected climate-driven range dynamics and future genetic erosion, and designed an optimal conservation framework for the region. We identified several patches of high haplotype diversity (HD), with a relatively high number of haplotypes in southeastern Third Pole. Regression models revealed that climate and topography have interacted to shape patterns of genetic diversity, with latitude and precipitation being the best predictors for HD of cpDNA and nrDNA, respectively. Ecological niche modeling predicted an approximate 43 km northwestward and 86 m upward shift in suitable habitats under future climate scenarios, likely leading to a significant loss of up to 13.19% and 15.49% of cpDNA and nrDNA genetic diversity, respectively. Alarmingly, 71.20% of the newly identified conservation priority areas fall outside of the existing protected areas and planned National Park Clusters. Therefore, we recommend expanding the network by 2.02 × 105 km2 (5.91%) in the Third Pole, increasing the total conserved area to 1.36 × 106 km2 (39.93%) to effectively preserve the evolutionary potential of plants. This study represents an innovative attempt to incorporate genetic diversity into biodiversity conservation efforts.
Collapse
Affiliation(s)
- Moses C Wambulwa
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Department of Life Sciences, School of Science and Computing, South Eastern Kenya University, Kitui, Kenya
| | - Guang-Fu Zhu
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Ya-Huang Luo
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, Yunnan, China
| | - Zeng-Yuan Wu
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Jim Provan
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK
| | - Marc W Cadotte
- Department of Biological Sciences, University of Toronto-Scarborough, Toronto, Ontario, Canada
| | - Alistair S Jump
- Biological and Environmental Sciences, University of Stirling, Stirling, UK
| | - Francis N Wachira
- Department of Life Sciences, School of Science and Computing, South Eastern Kenya University, Kitui, Kenya
| | - Lian-Ming Gao
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, Yunnan, China
| | - Ting-Shuang Yi
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Jie Cai
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Hong Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - De-Zhu Li
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, Yunnan, China
| | - Jie Liu
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- Department of Biological Sciences, University of Toronto-Scarborough, Toronto, Ontario, Canada
| |
Collapse
|
2
|
Johansson J, Arce AN, Gill RJ. How competition between overlapping generations can influence optimal egg-laying strategies in annual social insects. Oecologia 2023; 202:535-547. [PMID: 37428254 PMCID: PMC10386978 DOI: 10.1007/s00442-023-05411-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 06/15/2023] [Indexed: 07/11/2023]
Abstract
Annual social insects are an integral functional group of organisms, particularly in temperate environments. An emblematic part of their annual cycle is the social phase, during which the colony-founding queen rears workers that later assist her in rearing sexual progeny (gynes and drones). In many annual social insects, such as species of bees, wasps, and other groups, developing larvae are provisioned gradually as they develop (progressive provisioning) leading to multiple larval generations being reared simultaneously. We present a model for how the queen in such cases should optimize her egg-laying rate throughout the social phase depending on number-size trade-offs, colony age-structure, and energy balance. Complementing previous theory on optimal allocation between workers vs. sexuals in annual social insects and on temporal egg-laying patterns in solitary insects, we elucidate how resource competition among overlapping larval generations can influence optimal egg-laying strategies. With model parameters informed by knowledge of a common bumblebee species, the optimal egg-laying schedule consists of two temporally separated early broods followed by a more continuous rearing phase, matching empirical observations. However, eggs should initially be laid continuously at a gradually increasing rate when resources are scarce or mortality risks high and in cases where larvae are fully supplied with resources at the egg-laying stage (mass-provisioning). These factors, alongside sexual:worker body size ratios, further determine the overall trend in egg-laying rates over the colony cycle. Our analysis provides an inroad to study and mechanistically understand variation in colony development strategies within and across species of annual social insects.
Collapse
Affiliation(s)
- Jacob Johansson
- Department of Biology, Lund University, Sölvegatan 37, 22362, Lund, Sweden.
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire, SL5 7PY, UK.
| | - Andres N Arce
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire, SL5 7PY, UK
- School of Engineering, Arts, Science and Technology, University of Suffolk, 19 Neptune Quay, Ipswich, IP4 1QJ, UK
| | - Richard J Gill
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire, SL5 7PY, UK
| |
Collapse
|
3
|
Plastic energy allocation toward life-history functions in a consumer-resource interaction : Analyzing the temporal patterns of the consumer-resource dynamics. J Math Biol 2022; 85:68. [PMID: 36416949 DOI: 10.1007/s00285-022-01834-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 11/03/2022] [Accepted: 11/07/2022] [Indexed: 11/24/2022]
Abstract
Various environmental alterations resulting from the current global change compromise the persistence of species in their habitual environment. To cope with the obvious risk of extinction, plastic responses provide organisms with rapid acclimatization to new environments. The premise of plastic rescue has been theoretically studied from mathematical models in both deterministic and stochastic environments, focusing on analyzing the persistence and stability of the populations. Here, we evaluate this premise in the framework of a consumer-resource interaction considering the energy investment towards reproduction vs. maintenance as a plastic trait according to positive/negative variation of the available resource. A basic consumer-resource mathematical model is formulated based on the principle of biomass conversion that incorporates the energy allocation toward vital functions of the life-cycle of consumer individuals. Our mathematical approach is based on the impulsive differential equations at fixed moments considering two impulsive effects associated with the instants at which consumers obtain environmental information and when energy allocation strategy change occurs. From a preliminary analysis of the non-plastic temporal dynamics, namely when the energy allocation is constant over time and without experiencing changes concerning the variation of resources, both the persistence and stability of the consumer-resource dynamic are dependent on the energy allocation strategies belonging to a set termed stability range. We found that the plastic energy allocation can promote a stable dynamical pattern in the consumer-resource interaction depending on both the magnitude of the energy allocation change and the time lag between environmental sensibility instants and when the expression of the plastic trait occurs.
Collapse
|
4
|
Koshkin S, Zalles Z, Tobin MF, Toumbacaris N, Spiess C. Optimal allocation in annual plants with density-dependent fitness. Theory Biosci 2021; 140:177-196. [PMID: 33846896 DOI: 10.1007/s12064-021-00343-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 03/24/2021] [Indexed: 11/28/2022]
Abstract
We study optimal two-sector (vegetative and reproductive) allocation models of annual plants in temporally variable environments that incorporate effects of density-dependent lifetime variability and juvenile mortality in a fitness function whose expected value is maximized. Only special cases of arithmetic and geometric mean maximizers have previously been considered in the literature, and we also allow a wider range of production functions with diminishing returns. The model predicts that the time of maturity is pushed to an earlier date as the correlation between individual lifetimes increases, and while optimal schedules are bang-bang at the extremes, the transition is mediated by schedules where vegetative growth is mixed with reproduction for a wide intermediate range. The mixed growth lasts longer when the production function is less concave allowing for better leveraging of plant size when generating seeds. Analytic estimates are obtained for the power means that interpolate between arithmetic and geometric mean and correspond to partially correlated lifetime distributions.
Collapse
|
5
|
Frýdlová P, Mrzílková J, Šeremeta M, Křemen J, Dudák J, Žemlička J, Němec P, Velenský P, Moravec J, Koleška D, Zahradníčková V, Jirásek T, Kodym P, Frynta D, Zach P. Universality of indeterminate growth in lizards rejected: the micro-CT reveals contrasting timing of growth cartilage persistence in iguanas, agamas, and chameleons. Sci Rep 2019; 9:18913. [PMID: 31831851 PMCID: PMC6908584 DOI: 10.1038/s41598-019-54573-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 11/06/2019] [Indexed: 02/06/2023] Open
Abstract
Squamate reptiles are considered to exhibit indeterminate growth. Nevertheless, current literature disputes the available definitions of this growth type, presents new theoretical models, and questions its universality in cold-blooded vertebrates. We have followed up on our previous research employing micro-CT to explore growth plate cartilage (GPC) in the epiphysis of long bones, which is responsible for longitudinal skeletal growth by the endochondral ossification process. We focused on numerous and highly diversified group of the Iguania clade comprising Acrodonta (agamas and chameleons) and Pleurodonta ("iguanas"). We recorded the absence of GPC in most of the examined adult Pleurodonta specimens and interpret it as an irreversible arrest of skeletal growth. This finding clearly rejects the universality of indeterminate growth in lizards. On the other hand, we found apparent GPC preservation in most of the adult specimens belonging to Acrodonta. This suggests a preserved ability to continue body growth throughout most of their life. We discuss the uncovered disparity between Acrodonta and Pleurodonta and emphasize the importance of GPC degradation timing.
Collapse
Affiliation(s)
- Petra Frýdlová
- Department of Zoology, Faculty of Science, Charles University, Viničná 7, CZ-12844, Prague, Czech Republic
- Department of Anatomy, Third Faculty of Medicine, Charles University, Ruská 2411/87, CZ-10000, Prague, Czech Republic
| | - Jana Mrzílková
- Specialized laboratory of experimental imaging, Ruská 2411/87, CZ-10000, Prague, Czech Republic
- Department of Anatomy, Third Faculty of Medicine, Charles University, Ruská 2411/87, CZ-10000, Prague, Czech Republic
| | - Martin Šeremeta
- Specialized laboratory of experimental imaging, Ruská 2411/87, CZ-10000, Prague, Czech Republic
- Department of Anatomy, Third Faculty of Medicine, Charles University, Ruská 2411/87, CZ-10000, Prague, Czech Republic
| | - Jan Křemen
- Specialized laboratory of experimental imaging, Ruská 2411/87, CZ-10000, Prague, Czech Republic
- Department of Anatomy, Third Faculty of Medicine, Charles University, Ruská 2411/87, CZ-10000, Prague, Czech Republic
| | - Jan Dudák
- Institute of Experimental and Applied Physics, Czech Technical University in Prague, Husova 5, CZ-11000, Prague, Czech Republic
| | - Jan Žemlička
- Institute of Experimental and Applied Physics, Czech Technical University in Prague, Husova 5, CZ-11000, Prague, Czech Republic
| | - Pavel Němec
- Department of Zoology, Faculty of Science, Charles University, Viničná 7, CZ-12844, Prague, Czech Republic
| | - Petr Velenský
- Prague Zoo, U Trojského Zámku 3, CZ-17100, Prague, Czech Republic
| | - Jiří Moravec
- Department of Zoology, National Museum, Cirkusová 1740, CZ-19300, Prague, Czech Republic
| | - Daniel Koleška
- Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, CZ-16500, Prague, Czech Republic
| | - Veronika Zahradníčková
- Department of Zoology, Faculty of Science, Charles University, Viničná 7, CZ-12844, Prague, Czech Republic
| | - Tomáš Jirásek
- Zoological and Botanical Garden Pilsen, Pod Vinicemi 9, CZ-30116, Pilsen, Czech Republic
| | - Petr Kodym
- National Institute of Public Health, Šrobárova 48, CZ-10042, Prague, Czech Republic
| | - Daniel Frynta
- Department of Zoology, Faculty of Science, Charles University, Viničná 7, CZ-12844, Prague, Czech Republic.
| | - Petr Zach
- Specialized laboratory of experimental imaging, Ruská 2411/87, CZ-10000, Prague, Czech Republic
- Department of Anatomy, Third Faculty of Medicine, Charles University, Ruská 2411/87, CZ-10000, Prague, Czech Republic
| |
Collapse
|
6
|
Yoshioka H, Tanaka T, Aranishi F, Izumi T, Fujihara M. Stochastic optimal switching model for migrating population dynamics. JOURNAL OF BIOLOGICAL DYNAMICS 2019; 13:706-732. [PMID: 31701818 DOI: 10.1080/17513758.2019.1685134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Accepted: 10/18/2019] [Indexed: 06/10/2023]
Abstract
An optimal switching control formalism combined with the stochastic dynamic programming is, for the first time, applied to modelling life cycle of migrating population dynamics with non-overlapping generations. The migration behaviour between habitats is efficiently described as impulsive switching based on stochastic differential equations, which is a new standpoint for modelling the biological phenomenon. The population dynamics is assumed to occur so that the reproductive success is maximized under an expectation. Finding the optimal migration strategy ultimately reduces to solving an optimality equation of the quasi-variational type. We show an effective linkage between our optimality equation and the basic reproduction number. Our model is applied to numerical computation of optimal migration strategy and basic reproduction number of an amphidromous fish Plecoglossus altivelis altivelis in Japan as a target species.
Collapse
Affiliation(s)
- Hidekazu Yoshioka
- Graduate School of Natural Science and Technology, Shimane University, Matsue, Japan
- Fisheries Ecosystem Project Center, Shimane University, Matsue, Japan
| | - Tomomi Tanaka
- Fisheries Ecosystem Project Center, Shimane University, Matsue, Japan
| | - Futoshi Aranishi
- Graduate School of Natural Science and Technology, Shimane University, Matsue, Japan
- Fisheries Ecosystem Project Center, Shimane University, Matsue, Japan
| | - Tomoki Izumi
- Graduate School of Agriculture, Ehime University, Matsuyama, Japan
| | | |
Collapse
|
7
|
Ejsmond A, Kozłowski J, Ejsmond MJ. Probing of mortality rate by staying alive: The growth‐reproduction trade‐off in a spatially heterogeneous environment. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13442] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anna Ejsmond
- Department of Arctic Biology University Centre in Svalbard Longyearbyen Norway
- Department of Biological Sciences University of Bergen Bergen Norway
- Institute of Environmental Sciences Jagiellonian University Kraków Poland
| | - Jan Kozłowski
- Institute of Environmental Sciences Jagiellonian University Kraków Poland
| | - Maciej J. Ejsmond
- Institute of Environmental Sciences Jagiellonian University Kraków Poland
- Centre for Ecology and Evolution in Microbial Model Systems Linnaeus University Kalmar Sweden
| |
Collapse
|
8
|
Yoshioka H. A stochastic differential game approach toward animal migration. Theory Biosci 2019; 138:277-303. [PMID: 30972714 DOI: 10.1007/s12064-019-00292-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 03/04/2019] [Indexed: 10/27/2022]
Abstract
A stochastic differential game model for animal migration between two habitats under uncertain environment, a new population dynamics model, is formulated. Its novelty is the use of an impulse control formalism to naturally describe migrations with different timings and magnitudes that the conventional models could not handle. Uncertainty of the environment that the population faces with is formulated in the context of the multiplier robust control. The optimal migration strategy to give the maximized minimal profit is found through a Hamilton-Jacobi-Bellman quasi-variational inequality (HJBQVI). A key message from HJBQVI is that its free boundary determines the optimal migration strategy. Solving the HJBQVI is carried out with a specialized stable and convergent finite difference scheme. This paper theoretically suggests that the sub-additivity of the performance index, the index to be optimized through the migration, critically affects the resulting strategy. The computational results with the established scheme are consistent with the theoretical predictions and support importance of the sub-additivity property. Social interaction to reduce the net mortality rate is also quantified, suggesting a linkage between the present and existing population dynamics models.
Collapse
Affiliation(s)
- Hidekazu Yoshioka
- Faculty of Life and Environmental Science, Shimane University, Nishikawatsu-cho, Matsue, 1060, Japan.
| |
Collapse
|
9
|
Renzi JJ, Peachey WD, Gerst KL. A decade of flowering phenology of the keystone saguaro cactus (Carnegiea gigantea). AMERICAN JOURNAL OF BOTANY 2019; 106:199-210. [PMID: 30791093 DOI: 10.1002/ajb2.1231] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 11/26/2018] [Indexed: 06/09/2023]
Abstract
PREMISE OF THE STUDY Phenology is the study of biological life cycle events, such as flowering and migration. Climate patterns can alter these life history events, having ecosystem-wide ramifications. For example, warmer springs are associated with earlier leaf-out for many species, impacting species interactions and growing-season carbon dynamics. While phenological research has been conducted extensively in temperate regions, relatively little is known about the phenological responses in arid and semi-arid regions. METHODS In this study we looked at the flowering phenology of a keystone species in the Sonoran Desert, the saguaro cactus (Carnegiea gigantea). The timing and abundance of flowering was observed on 151 individuals for 10 years at a site near Tucson, Arizona, USA. Using six phenological traits, we explored the relationship between saguaro size and flowering and the climatic drivers of flowering. KEY RESULTS Our analyses demonstrated how the calculation of phenological traits at the individual versus the population level can yield differing responses to climate variability, suggesting that not all studies examining the same trait (e.g., first day of bloom) are directly comparable. We found that larger cacti began flowering earlier, flowered for longer, and produced more flowers. Warmer temperatures were correlated with advanced onset and higher bloom yields, while increased precipitation appeared to delay onset and reduce bloom yields. CONCLUSIONS Given that climate models predict that the Southwestern USA will become increasingly warmer with more variable precipitation, saguaros may begin flowering earlier in the season and flower more intensely, which could impact pollen availability and population dynamics.
Collapse
Affiliation(s)
- Julianna J Renzi
- USA National Phenology Network, National Coordinating Office, Tucson, Arizona, 85721
- Nicholas School of the Environment, Duke University, Durham, North Carolina, 27708
| | - William D Peachey
- Sonoran Science Solutions, 550 N. Avenida Venado, Tucson, Arizona, 85748
| | - Katharine L Gerst
- USA National Phenology Network, National Coordinating Office, Tucson, Arizona, 85721
- School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, 85721
| |
Collapse
|