Characterization of patterns and variability in the dynamics of outdoor aquatic mesocosms: exploring the capabilities and challenges in data supporting aquatic system models

Aquatic mesocosms are complex test systems used within regulatory risk assessment of plant protection products. These model ecosystems allow researchers to capture interactions of multiple species under realistic environmental conditions. They enable assessment of direct and indirect effects of stressors at all trophic levels (i.e., from primary producers to secondary consumers) and impacts on ecosystem functions. Due to the limited ability to test the multitude of potential exposure scenarios, cross-linking aquatic mesocosm studies with virtual mesocosms, i.e., aquatic system models (ASMs), can serve to meet the demand for more environmental realism and ecological relevance in risk assessment. In this study, full control data sets from seven aquatic mesocosm studies conducted at a single test facility under GLP were analysed graphically and using descriptive statistics. Thereby, not only a comprehensive data base but also an insight into the species present, their dynamics over time, and variability in unchallenged mesocosms was observed. While consistency in dynamics could be discerned for physical and chemical parameters, variability was evident for several biological endpoints. This variability points to amplification of small differences over time as well as to stochastic processes. The outline of existing gaps and uncertainties in data leads to the estimation of what can be expected to be captured and predicted by ASMs.

Highway stormwater ponds as islands of Odonata diversity in an agricultural landscape

Stormwater management ponds, which are constructed to retain excess runoff and pollutants from traffic, play an important role in the freshwater biodiversity in highly modified areas. However, their roles in agricultural and semi-natural landscapes remain largely unexplored. In this study, we used Odonata as a bioindicator to compare a set of highway stormwater ponds and surrounding ponds within an agricultural and semi-natural landscape to examine the extent to which stormwater ponds act as biodiversity refuges. We analyzed the differences in environmental parameters and the richness, compositions, and conservation values of the odonate communities of stormwater and surrounding ponds. We also examined the factors controlling the differences in the communities of both pond types. The stormwater ponds were smaller, less eutrophicated, less shaded by trees, less stocked with fish, and less connected with other waterbodies than the surrounding ponds. However, they had a higher plant diversity and pH values and were more densely overgrown with vegetation. Compared with surrounding ponds, stormwater ponds had a higher Odonata richness and β-diversity, but their taxonomic distinctness was significantly lower. Therefore, stormwater ponds hosted more variable communities but their assemblages were taxonomically similar. Indicator species were only identified in stormwater ponds. Furthermore, stormwater ponds harbored more species with higher conservation values. The most important factors affecting the differences between stormwater and surrounding ponds were the trophic state, relative tree shading, and fish stocking intensity. With their increase, the richness and rarity decreased. Our results highlight the potential of stormwater ponds to enhance the biodiversity outside urban areas by providing specific habitat conditions that are unique to the surrounding agricultural landscape. In addition, we suggest management practices that can be used to enhance their biodiversity conservation function.

A Biodiversity Boost From the Eurasian Beaver (Castor fiber) in Germany’s Oldest National Park

Freshwater ecosystems are among the most threatened ecosystems on the planet. Beavers are important engineers in freshwater ecosystems and reintroduction programs have enabled the recovery of beaver populations in several European countries, but the impact on biodiversity conservation is still unclear. We studied the effects of beavers on the terrestrial biodiversity of eight taxonomic groups by comparing beaver ponds with river and forest habitats in a mountain forest ecosystem in Central Europe. Among the 1,166 collected species, 196 occurred exclusively at beaver ponds, 192 in plots at the river, and 156 in the forest plots. More species of conservation concern were found at the beaver ponds (76) than on the river (67) and forest (63) plots. Abundances of bats and birds were higher at the beaver ponds than at the river or forest sites. The number of bird species at the beaver ponds was higher than at the river. The community composition of birds, beetles, and true bugs differed significantly between the beaver ponds and river plots, and for seven taxonomic groups it differed significantly between the beaver ponds and forest plots. An indicator species analysis revealed eight indicator species for the beaver pond but none for the river and forest plots. Our results demonstrate that beavers, as ecological engineers, increase habitat heterogeneity in mountain forests and thereby promote biodiversity. The expansion of beaver populations into these ecosystems should thus be supported, as it may serve as a biotic restoration tool.

Species ethnobotanical values rather than regional species pool determine plant diversity in agroforestry systems

The conversion of natural systems into farms and agroecosystems is the main cause of biodiversity loss. In human-dominated landscapes, understanding the interactions between agroforestry systems and adjacent natural vegetation is fundamental to developing sustainable agricultural systems. Species can move between these two systems with natural systems providing the regional pool of species that shape the agricultural values and conservation value of the agroforestry systems. We investigated the influence of neighboring natural habitats on traditional agroforestry systems in the buffer zone of Pendjari Biosphere Reserve in Benin to understand the contribution of regional processes on the quality of agroforestry systems. We expected that agroforestry parklands adjacent to natural vegetation with high species diversity will also have higher plant species diversity. We found no similarity in plant species composition between agroforestry systems and adjacent natural habitats. A small proportion of species in adjacent natural habitats were found in agroforestry systems. The proportion of shared species was not significantly influenced by plant diversity in adjacent natural habitats or the distance from the agroforestry systems to the natural adjacent habitat. However, plant diversity in agroforestry systems was strongly associated with site ethnobotanical values indicating that farmers act as a supplemental but severe environmental filter of the regional species pool. Our study suggests that promoting the plantation of plants with high ethnobotanical use-value is a potentially viable strategy for sustainable agriculture and ecological restoration in Biosphere reserves.

Functional trait sorting increases over succession in metacommunity mosaics of fish assemblages

Metacommunity theory predicts that the relative importance of regional and local processes structuring communities will change over time since initiation of community assembly. Determining effects of these processes on species and trait diversity over succession remains largely unaddressed in metacommunity ecology to date, yet could confer an improved mechanistic understanding of community assembly. To test theoretical predictions of the increasing importance of local processes in structuring communities over successional stages in metacommunities, we evaluated fish species and trait diversity in three pond metacommunities undergoing secondary succession from beaver (Castor canadensis) disturbance. Processes influencing taxonomic and trait diversity were contrasted across pond communities of different ages and in reference streams. Counter to predictions, the local environment became less important in structuring communities over succession but did exert a stronger effect on trait sorting. Beta diversity and trait richness declined over succession while there was no influence on species richness or trait dispersion. The trait filtering in older habitats was likely a response to the larger and deeper pond ecosystems characteristic of late succession. In contrast to these observed effects in ponds, the local environment primarily structured species and trait diversity in streams. Analyses of the relative importance of regional and local processes in structuring fish assemblages within each pond metacommunity suggests that habitat age and connectivity were more important than the environment in structuring communities but contributions were region and scale-dependent. Together, these findings highlight that regional and local processes can differentially influence taxonomic and trait diversity in successional metacommunity mosaics.

Impact of different habitat parameters on carabid beetle assemblages in selected areas of a forest-field landscape in Poland – 10 years of data

Long-term data on carabid beetles assemblages on differently managed study sites in forests and open areas were analysed to study the impact of selected environmental factors on the carabid assemblages of both the individual study sites over the years and the set of all study sites in selected years.Ordination separated forest stands from open areas along with the first, and samples of 2011 from those of 2015 along the second axis. For study sites in forest stands in most cases, precipitation was a significant factor, especially precipitation in the year before the inventory. However, for the youngest forest site, the year of the study was most important, indicating a succession process. For study sites in open areas, both precipitation and temperature showed most often significant results. Analysing the impact of environmental factors on carabid assemblages in the full set of study sites in 2011 and 2015 revealed carbon content in the organic layer and distance from the nearest forest as significant factors. The results of the study extend our knowledge on the impact of environmental factors on the formation of carabid beetle assemblages in rural landscapes, which is essential in the framework of developing biodiversity conservation strategies.

Dispersal mitigates bacterial dominance over microalgal competitor in metacommunities

Ecological theory suggests that a combination of local and regional factors regulate biodiversity and community functioning in metacommunities. The relative importance of different factors structuring communities likely changes over successional time, but to date this concept is scarcely documented. In addition, the few studies describing successional dynamics in metacommunity regulation have only focused on a single group of organisms. Here, we report results of an experimental study testing the effect size of initial local community composition and dispersal between local patches on community dynamics of benthic microalgae and their associated bacteria over community succession. Our results show that over time dispersal outweighed initial effects of community composition on microalgal evenness and biomass, microalgal β-diversity, and the ratio of bacteria to microalgae. At the end of the experiment (ca. 20 microalgae generations), dispersal significantly decreased microalgal evenness and β-diversity by promoting one regionally superior competitor. Dispersal also decreased the ratio of bacteria to microalgae, while it significantly increased microalgal biomass. These results suggest that the dispersal-mediated establishment of a dominant and superior microalgae species prevented bacteria from gaining competitive advantage over the autotrophs in these metacommunities, ultimately maintaining the provision of autotrophic biomass. Our study emphasizes the importance of time for dispersal to be a relevant community-structuring mechanism. Moreover, we highlight the need for considering multiple competitors in complex metacommunity systems to properly pinpoint the consequences of local change in dominance through dispersal for metacommunity function.

Estimation of metapopulation colonization rates from disturbance history and occurrence-pattern data

Occurrence patterns of many sessile species in dynamic landscapes are not in equilibrium due to their slow rates of metapopulation colonization and extinction. Colonization-extinction data enable the estimation of colonization rates for such species, but collecting the necessary data may require long waiting times between sampling years. Methods for estimating colonization rates of nonequilibrium metapopulations from single occurrence-pattern data have so far relied on additional data on patch ages and on past patch connectivities. We present an approach where metapopulation colonization rates are estimated from occurrence-pattern data and from disturbance history data that inform of past patch dynamics and that can be collected together with occurrence-pattern data. We estimated parameter values regulating patch and metapopulation dynamics by simulating patch network and metapopulation histories that result in present-like patch network configurations and metapopulation occurrence patterns. We tested our approach using occurrence-pattern data of the epiphytic lichen Lobaria pulmonaria in Fennoscandian forests, and fire-scar data that inform of the 400-yr history of fires and host tree dynamics in the same landscapes. The estimated model parameters were similar to estimates obtained using colonization-extinction data. The projected L. pulmonaria occupancy into the future also agreed with the respective projections that were made using the model estimated from colonization-extinction data. Our approach accelerates the estimation of metapopulation colonization rates for sessile species that are not in metapopulation equilibrium with the current landscape structure.

Superior Dispersal Ability Can Lead to Persistent Ecological Dominance throughout Succession

Microbial communities are ubiquitous and occupy nearly every imaginable habitat and resource, including human-influenced habitats (e.g., fermenting food and hospital surfaces) and habitats with little human influence (e.g., aquatic communities living in carnivorous plant pitchers). We studied yeast communities living in pitchers of the carnivorous purple pitcher plant to understand how and why microbial communities change over time. We found that dispersal ability is not only important for fungal communities early in their existence, it can also determine which species is dominant (here, the yeast Candida pseudoglaebosa) long after the species and its competitors have arrived. These results contrast with observations from many human-influenced habitats, in which a good competitor eventually outcompetes good dispersers, since humans often design these habitats to favor a specific competitor. This study will help microbiologists understand the qualities of microbial species that enable takeover of new habitats in both natural and human-influenced environments.

A large number of descriptive surveys have shown that microbial communities experience successional changes over time and that ecological dominance is common in the microbial world. However, direct evidence for the ecological processes mediating succession or causing ecological dominance remains rare. Different dispersal abilities among species may be a key mechanism. We surveyed fungal diversity within a metacommunity of pitchers of the model carnivorous plant Sarracenia purpurea and discovered that the yeast Candida pseudoglaebosa was ecologically dominant. Its frequency in the metacommunity increased during the growing season, and it was not replaced by other taxa. We next measured its competitive ability in a manipulative laboratory experiment and tracked its dispersal over time in nature. Despite its dominance, C. pseudoglaebosa is not a superior competitor. Instead, it is a superior disperser: it arrives in pitchers earlier, and disperses into more pitchers, than other fungi. Differential dispersal across the spatially structured metacommunity of individual pitchers emerges as a key driver of the continuous dominance of C. pseudoglaebosa during succession.

IMPORTANCE Microbial communities are ubiquitous and occupy nearly every imaginable habitat and resource, including human-influenced habitats (e.g., fermenting food and hospital surfaces) and habitats with little human influence (e.g., aquatic communities living in carnivorous plant pitchers). We studied yeast communities living in pitchers of the carnivorous purple pitcher plant to understand how and why microbial communities change over time. We found that dispersal ability is not only important for fungal communities early in their existence, it can also determine which species is dominant (here, the yeast Candida pseudoglaebosa) long after the species and its competitors have arrived. These results contrast with observations from many human-influenced habitats, in which a good competitor eventually outcompetes good dispersers, since humans often design these habitats to favor a specific competitor. This study will help microbiologists understand the qualities of microbial species that enable takeover of new habitats in both natural and human-influenced environments.