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Li T, Wang X, Wang X, Huang J, Shen L. Mechanisms Driving the Distribution and Activity of Mineralization and Nitrification in the Reservoir Riparian Zone. MICROBIAL ECOLOGY 2023; 86:1829-1846. [PMID: 36702929 DOI: 10.1007/s00248-023-02180-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
Abstract
The riparian zone ecosystems have greater energy flow and elemental cycling than adjacent terrestrial and aquatic ecosystems. Mineralization and nitrification are important initiating processes in the nitrogen cycle, but their distribution and activity under different environmental conditions in the riparian zone and the driving mechanisms are still not clear. We investigated the effects of environmental and microbial factors on mineralization and nitrification activities by analyzing the community of alkaline (apr) and neutral (npr) metallopeptidase, ammonia-oxidizing archaea (AOA), and bacteria (AOB) in soils and sediments under different land-use types in the riparian zone of Miyun Reservoir, as well as measuring potential nitrogen mineralization and ammonia oxidation rates (AOR). The results showed that the mineralization and nitrification activities of soils were greater than those of sediments. AOA and AOB dominate the ammonia oxidation activity of soil and sediment, respectively. NH4+ content was a key factor influencing the ecological niche differentiation between AOA and AOB. The high carbon and nitrogen content of the woodland significantly increased mineralization and nitrification activity. Microbial communities were significantly clustered in the woodland. The land-use type, not the flooding condition, determined the distribution of microbial community structure. The diversity of npr was significantly correlated with potential N mineralization rates, while the transcript abundance of AOA was significantly correlated with ammonia oxidation rates. Our study suggests that environmental changes regulate the distribution and activity of mineralization and nitrification processes in the reservoir riparian zone by affecting the transcript abundance, diversity and community structure of the microbial functional genes.
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Affiliation(s)
- Tingting Li
- College of Resources, Environment and Tourism, Capital Normal University, No. 105, North West Third Ring Road, Haidian District, Beijing, 100048, China
| | - Xiaoyan Wang
- College of Resources, Environment and Tourism, Capital Normal University, No. 105, North West Third Ring Road, Haidian District, Beijing, 100048, China.
| | - Xia Wang
- College of Resources, Environment and Tourism, Capital Normal University, No. 105, North West Third Ring Road, Haidian District, Beijing, 100048, China
| | - Jingyu Huang
- College of Resources, Environment and Tourism, Capital Normal University, No. 105, North West Third Ring Road, Haidian District, Beijing, 100048, China
| | - Lei Shen
- College of Resources, Environment and Tourism, Capital Normal University, No. 105, North West Third Ring Road, Haidian District, Beijing, 100048, China
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Arce MI, Sánchez-García M, Martínez-López J, Cayuela ML, Sánchez-Monedero MÁ. Role of dry watercourses of an arid watershed in carbon and nitrogen processing along an agricultural impact gradient. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 333:117462. [PMID: 36758413 DOI: 10.1016/j.jenvman.2023.117462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/01/2023] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
In the Mediterranean arid region such as Southeast (SE) Spain, a considerable part of the fluvial network runs permanently dry. Here, many dry watercourses are embedded in catchments where agriculture has brought changes in carbon (C) and nitrogen (N) availability due to native riparian vegetation removal and the establishment of intensive agriculture. Despite their increasing scientific recognition and vulnerability, our knowledge about dry riverbeds biogeochemistry and environmental drivers is still limited, moreover for developing proper management plans at the whole catchment scale. We examined CO2 and N2O emissions in five riverbeds in SE Spain of variable agricultural impact under dry and simulated rewetted conditions. Sediment denitrifying capacity upon rewetting was also assessed. We found that, regardless of agricultural impact, all riverbeds can emit CO2 under dry and wet conditions. Emissions of N2O were only observed in our study when a long-term rewetting driving saturated sediments was conducted. Besides, most biogeochemical capabilities were enhanced in summer, reflecting the sensitiveness of microbial activity to temperature. Biogeochemical processing variation across rivers appeared to be more controlled by availability of sediment organic C, rather than by agriculturally derived nitrate. We found that the studied dry riverbeds, agriculturally affected or not, may be active sources of CO2 and contribute to transitory N2O emissions during rewetting phenomena, potentially through denitrification. We propose that management plans aiming to support ecosystem biogeochemistry through organic C from native vegetation rather than agricultural exudates would help to reduce anthropogenic greenhouse gases emissions and excess of nutrients in the watershed and to control the nitrate inputs to coastal ecosystems.
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Affiliation(s)
- María Isabel Arce
- Department of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Murcia, Spain.
| | - María Sánchez-García
- Department of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Murcia, Spain
| | - Javier Martínez-López
- Department of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Murcia, Spain; Department of Ecology, Faculty of Science, University of Granada, 18071, Granada, Spain; Instituto Interuniversitario de Investigación Del Sistema Tierra en Andalucía (IISTA), Universidad de Granada, Avda. Del Mediterráneo S/n, E-18006, Granada, Spain
| | - María Luz Cayuela
- Department of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Murcia, Spain
| | - Miguel Ángel Sánchez-Monedero
- Department of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Murcia, Spain
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Li S, Gang D, Zhao S, Qi W, Liu H. Response of ammonia oxidation activities to water-level fluctuations in riparian zones in a column experiment. CHEMOSPHERE 2021; 269:128702. [PMID: 33162161 DOI: 10.1016/j.chemosphere.2020.128702] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/29/2020] [Accepted: 10/19/2020] [Indexed: 06/11/2023]
Abstract
Biogeochemical hotspots of nitrogen cycling such as ammonia oxidation commonly occur in riparian ecosystems. However, the responses of ammonia-oxidizing archaea (AOA) and bacteria (AOB) to water-level fluctuations (WLF) in riparian zones remain unclear. In this study, two patterns of WLF (gradual waterlogging and drying) were investigated in a 9-month column experiment, and the abundances and activities of AOA and AOB were investigated. The recovery evaluation revealed AOB abundance had not returned to the initial level at the end of the experiment, while AOA abundance had recovered nearly completely. AOA outnumbered AOB at almost all depths, and AOA showed higher resistance and adaptation to WLF than AOB. However, higher microbial abundance was not always linked to the larger contribution to nitrification. Changes in environmental parameters such as moisture and dissolved oxygen caused by WLF instead of ammonia-oxidizing microorganism (AOM) abundance might play a key role in regulating the expression of amoA gene and thus the activity of ammonia oxidizers. In addition, the community structure of AOM evolved over the incubation period. The composition of AOA species in sediment changed in the same way as that in soil, and the Nitrosopumilus cluster showed strong resistance to WLF. Conversely, waterlogging changed the community structure of AOB in soil while drying had no significant effect on the AOB community structure in sediment. This study suggests that the ammonia oxidizers will respond to WLF and eventually affect N fate in riparian ecosystems considering the coupling with other N transformation processes.
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Affiliation(s)
- Siling Li
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Diga Gang
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Shuangju Zhao
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Weixiao Qi
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China; Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.
| | - Huijuan Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China; Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
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Pinto R, Weigelhofer G, Brito AG, Hein T. Effects of dry-wet cycles on nitrous oxide emissions in freshwater sediments: a synthesis. PeerJ 2021; 9:e10767. [PMID: 33614277 PMCID: PMC7883693 DOI: 10.7717/peerj.10767] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/22/2020] [Indexed: 11/20/2022] Open
Abstract
Background Sediments frequently exposed to dry-wet cycles are potential biogeochemical hotspots for greenhouse gas (GHG) emissions during dry, wet and transitional phases. While the effects of drying and rewetting on carbon fluxes have been studied extensively in terrestrial and aquatic systems, less is known about the effects of dry-wet cycles on N2O emissions from aquatic systems. As a notable part of lotic systems are temporary, and small lentic systems can substantially contribute to GHG emissions, dry-wet cycles in these ecosystems can play a major role on N2O emissions. Methodology This study compiles literature focusing on the effects of drying, rewetting, flooding, and water level fluctuations on N2O emissions and related biogeochemical processes in sediments of lentic and lotic ecosystems. Results N2O pulses were observed following sediment drying and rewetting events. Moreover, exposed sediments during dry phases can be active spots for N2O emissions. The general mechanisms behind N2O emissions during dry-wet cycles are comparable to those of soils and are mainly related to physical mechanisms and enhanced microbial processing in lotic and lentic systems. Physical processes driving N2O emissions are mainly regulated by water fluctuations in the sediment. The period of enhanced microbial activity is driven by increased nutrient availability. Higher processing rates and N2O fluxes have been mainly observed when nitrification and denitrification are coupled, under conditions largely determined by O2 availability. Conclusions The studies evidence the driving role of dry-wet cycles leading to temporarily high N2O emissions in sediments from a wide array of aquatic habitats. Peak fluxes appear to be of short duration, however, their relevance for global emission estimates as well as N2O emissions from dry inland waters has not been quantified. Future research should address the temporal development during drying-rewetting phases in more detail, capturing rapid flux changes at early stages, and further explore the functional impacts of the frequency and intensity of dry-wet cycles.
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Affiliation(s)
- Renata Pinto
- Instituto Superior de Agronomia, University of Lisbon, LEAF - Linking Landscape, Environment, Agriculture and Food, Lisbon, Portugal.,University of Natural Resources and Life Sciences, Institute of Hydrobiology and Aquatic Ecosystem Management, Vienna, Austria.,WasserCluster Lunz GmbH -Inter-university Center for Aquatic Ecosystem Research, Lunz am See, Austria
| | - Gabriele Weigelhofer
- University of Natural Resources and Life Sciences, Institute of Hydrobiology and Aquatic Ecosystem Management, Vienna, Austria.,WasserCluster Lunz GmbH -Inter-university Center for Aquatic Ecosystem Research, Lunz am See, Austria
| | - António Guerreiro Brito
- Instituto Superior de Agronomia, University of Lisbon, LEAF - Linking Landscape, Environment, Agriculture and Food, Lisbon, Portugal
| | - Thomas Hein
- University of Natural Resources and Life Sciences, Institute of Hydrobiology and Aquatic Ecosystem Management, Vienna, Austria.,WasserCluster Lunz GmbH -Inter-university Center for Aquatic Ecosystem Research, Lunz am See, Austria
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Defining Dry Rivers as the Most Extreme Type of Non-Perennial Fluvial Ecosystems. SUSTAINABILITY 2020. [DOI: 10.3390/su12177202] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
We define Dry Rivers as those whose usual habitat in space and time are dry channels where surface water may interrupt dry conditions for hours or a few days, primarily after heavy rainfall events that are variable in time and that usually lead to flash floods, disconnected from groundwater and thereby unable to harbor aquatic life. Conceptually, Dry Rivers would represent the extreme of the hydrological continuum of increased flow interruption that typically characterizes the non-perennial rivers, thus being preceded by intermittent and ephemeral rivers that usually support longer wet phases, respectively. This paper aims to show that Dry Rivers are ecosystems in their own right given their distinct structural and functional characteristics compared to other non-perennial rivers due to prevalence of terrestrial conditions. We firstly reviewed the variety of definitions used to refer to these non-perennial rivers featured by a predominant dry phase with the aim of contextualizing Dry Rivers. Secondly, we analyzed existing knowledge on distribution, geophysical and hydrological features, biota and biogeochemical attributes that characterize Dry Rivers. We explored the capacity of Dry Rivers to provide ecosystem services and described main aspects of anthropogenic threats, management challenges and the conservation of these ecosystems. We applied an integrative approach that incorporates to the limnological perspective the terrestrial view, useful to gain a better understanding of Dry Rivers. Finally, we drew main conclusions where major knowledge gaps and research needs are also outlined. With this paper, we ultimately expect to put value in Dry Rivers as non-perennial rivers with their own ecological identity with significant roles in the landscape, biodiversity and nutrient cycles, and society; thus worthy to be considered, especially in the face of exacerbated hydrological drying in many rivers across the world.
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Stubbington R, Acreman M, Acuña V, Boon PJ, Boulton AJ, England J, Gilvear D, Sykes T, Wood PJ. Ecosystem services of temporary streams differ between wet and dry phases in regions with contrasting climates and economies. PEOPLE AND NATURE 2020. [DOI: 10.1002/pan3.10113] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Affiliation(s)
- Rachel Stubbington
- School of Science and Technology Nottingham Trent University Nottingham UK
| | | | - Vicenç Acuña
- Catalan Institute for Water Research (ICRA) Girona Spain
- University of Girona Girona Spain
| | | | - Andrew J. Boulton
- School of Environmental and Rural Science University of New England Armidale NSW Australia
| | - Judy England
- Research, Analysis and Evaluation Environment Agency Wallingford UK
| | - David Gilvear
- School of Geography, Earth and Environmental Sciences University of Plymouth Plymouth UK
| | - Tim Sykes
- Romsey District Office Environment Agency Romsey UK
| | - Paul J. Wood
- Geography and Environment Loughborough University Loughborough UK
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Distinct responses from bacterial, archaeal and fungal streambed communities to severe hydrological disturbances. Sci Rep 2019; 9:13506. [PMID: 31534180 PMCID: PMC6751160 DOI: 10.1038/s41598-019-49832-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 08/24/2019] [Indexed: 11/08/2022] Open
Abstract
Stream microbes that occur in the Mediterranean Basin have been shown to possess heightened sensitivity to intensified water stress attributed to climate change. Here, we investigate the effects of long-term drought (150 days), storms and rewetting (7 days) on the diversity and composition of archaea, bacteria and fungi inhabiting intermittent streambed sediment (surface and hyporheic) and buried leaves. Hydrological alterations modified the archaeal community composition more than the bacterial community composition, whereas fungi were the least affected. Throughout the experiment, archaeal communities colonizing sediments showed greater phylogenetic distances compared to those of bacteria and fungi, suggesting considerable adaptation to severe hydrological disturbances. The increase in the class abundances, such as those of Thermoplasmata within archaea and of Actinobacteria and Bacilli within bacteria, revealed signs of transitioning to a drought-favoured and soil-like community composition. Strikingly, we found that in comparison to the drying phase, water return (as sporadic storms and rewetting) led to larger shifts in the surface microbial community composition and diversity. In addition, microhabitat characteristics, such as the greater capacity of the hyporheic zone to maintain/conserve moisture, tended to modulate the ability of certain microbes (e.g., bacteria) to cope with severe hydrological disturbances.
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Shumilova O, Zak D, Datry T, von Schiller D, Corti R, Foulquier A, Obrador B, Tockner K, Allan DC, Altermatt F, Arce MI, Arnon S, Banas D, Banegas‐Medina A, Beller E, Blanchette ML, Blanco‐Libreros JF, Blessing J, Boëchat IG, Boersma K, Bogan MT, Bonada N, Bond NR, Brintrup K, Bruder A, Burrows R, Cancellario T, Carlson SM, Cauvy‐Fraunié S, Cid N, Danger M, de Freitas Terra B, Girolamo AMD, del Campo R, Dyer F, Elosegi A, Faye E, Febria C, Figueroa R, Four B, Gessner MO, Gnohossou P, Cerezo RG, Gomez‐Gener L, Graça MA, Guareschi S, Gücker B, Hwan JL, Kubheka S, Langhans SD, Leigh C, Little CJ, Lorenz S, Marshall J, McIntosh A, Mendoza‐Lera C, Meyer EI, Miliša M, Mlambo MC, Moleón M, Negus P, Niyogi D, Papatheodoulou A, Pardo I, Paril P, Pešić V, Rodriguez‐Lozano P, Rolls RJ, Sanchez‐Montoya MM, Savić A, Steward A, Stubbington R, Taleb A, Vorste RV, Waltham N, Zoppini A, Zarfl C. Simulating rewetting events in intermittent rivers and ephemeral streams: A global analysis of leached nutrients and organic matter. GLOBAL CHANGE BIOLOGY 2019; 25:1591-1611. [PMID: 30628191 PMCID: PMC6850495 DOI: 10.1111/gcb.14537] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Accepted: 10/07/2018] [Indexed: 06/01/2023]
Abstract
Climate change and human pressures are changing the global distribution and the extent of intermittent rivers and ephemeral streams (IRES), which comprise half of the global river network area. IRES are characterized by periods of flow cessation, during which channel substrates accumulate and undergo physico-chemical changes (preconditioning), and periods of flow resumption, when these substrates are rewetted and release pulses of dissolved nutrients and organic matter (OM). However, there are no estimates of the amounts and quality of leached substances, nor is there information on the underlying environmental constraints operating at the global scale. We experimentally simulated, under standard laboratory conditions, rewetting of leaves, riverbed sediments, and epilithic biofilms collected during the dry phase across 205 IRES from five major climate zones. We determined the amounts and qualitative characteristics of the leached nutrients and OM, and estimated their areal fluxes from riverbeds. In addition, we evaluated the variance in leachate characteristics in relation to selected environmental variables and substrate characteristics. We found that sediments, due to their large quantities within riverbeds, contribute most to the overall flux of dissolved substances during rewetting events (56%-98%), and that flux rates distinctly differ among climate zones. Dissolved organic carbon, phenolics, and nitrate contributed most to the areal fluxes. The largest amounts of leached substances were found in the continental climate zone, coinciding with the lowest potential bioavailability of the leached OM. The opposite pattern was found in the arid zone. Environmental variables expected to be modified under climate change (i.e. potential evapotranspiration, aridity, dry period duration, land use) were correlated with the amount of leached substances, with the strongest relationship found for sediments. These results show that the role of IRES should be accounted for in global biogeochemical cycles, especially because prevalence of IRES will increase due to increasing severity of drying events.
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Affiliation(s)
- Oleksandra Shumilova
- Leibniz‐Institute of Freshwater Ecology and Inland Fisheries (IGB)BerlinGermany
- Institute of BiologyFreie Universität Berlin (FU)BerlinGermany
- Department of CivilEnvironmental and Mechanical EngineeringTrento UniversityTrentoItaly
| | - Dominik Zak
- Institute of BiologyFreie Universität Berlin (FU)BerlinGermany
- Institute of Landscape Ecology and Site EvaluationUniversity of RostockRostockGermany
- Department of BioscienceAarhus UniversitySilkeborgDenmark
| | - Thibault Datry
- IRSTEAUR RIVERLYCentre de Lyon‐VilleurbanneVilleurbanne CedexFrance
| | - Daniel von Schiller
- Department of Plant Biology and EcologyFaculty of Science and TechnologyUniversity of the Basque Country (UPV/EHU)BilbaoSpain
| | - Roland Corti
- IRSTEAUR RIVERLYCentre de Lyon‐VilleurbanneVilleurbanne CedexFrance
| | - Arnaud Foulquier
- Laboratoire d’Écologie Alpine (LECA)UMR CNRS‐UGA‐USMB 5553Université Grenoble AlpesGrenobleFrance
| | - Biel Obrador
- Department of Evolutionary Biology, Ecology and Environmental SciencesFaculty of BiologyBiodiversity Research Institute (IRBIO)University of BarcelonaBarcelonaSpain
| | - Klement Tockner
- Leibniz‐Institute of Freshwater Ecology and Inland Fisheries (IGB)BerlinGermany
- Institute of BiologyFreie Universität Berlin (FU)BerlinGermany
- Austrian Science Fund (FWF)ViennaAustria
| | | | - Florian Altermatt
- Department of Evolutionary Biology and Environmental StudiesUniversity of ZurichZürichSwitzerland
| | - María Isabel Arce
- Leibniz‐Institute of Freshwater Ecology and Inland Fisheries (IGB)BerlinGermany
- Centre of Edaphology and Applied Biology of Segura (CEBAS‐CSIC)MurciaSpain
| | - Shai Arnon
- Zuckerberg Institute for Water ResearchThe Jacob Blaustein Institutes for Desert ResearchBen‐Gurion University of the NegevBeershebaIsrael
| | - Damien Banas
- Université de Lorraine ‐ UR AFPAVandoeuvre‐Les‐NancyFrance
| | - Andy Banegas‐Medina
- Faculty of Environmental Science and EULA‐Chile CenterUniversidad de ConcepciónConcepciónChile
| | - Erin Beller
- Department of GeographyUniversity of CaliforniaBerkeleyCalifornia
| | - Melanie L. Blanchette
- Mine Water and Environment Research Centre (MiWER)School of ScienceEdith Cowan UniversityPerthAustralia
| | | | - Joanna Blessing
- Department of Environment and ScienceQueensland GovernmentBrisbaneQldAustralia
| | | | - Kate Boersma
- Department of BiologyUniversity of San DiegoSan DiegoCalifornia
| | - Michael T. Bogan
- School of Natural Resources and the EnvironmentUniversity of ArizonaTucsonArizona
| | - Núria Bonada
- Grup de Recerca Freshwater Ecology, Hydrology and Management (FEHM)Departament de Biologia EvolutivaEcologia i Ciències AmbientalsInstitut de Recerca de la Biodiversitat (IRBio)Universitat de BarcelonaBarcelonaSpain
| | - Nick R. Bond
- Centre for Freshwater EcosystemsLa Trobe UniversityWodongaVic.Australia
| | - Kate Brintrup
- Faculty of Environmental Science and EULA‐Chile CenterUniversidad de ConcepciónConcepciónChile
| | - Andreas Bruder
- Laboratory of Applied MicrobiologyUniversity of Applied Sciences and Arts of Southern SwitzerlandBellinzonaSwitzerland
| | - Ryan Burrows
- Australian Rivers InstituteGriffith UniversityNathanQldAustralia
| | - Tommaso Cancellario
- Department of Environmental BiologyBiodiversity Data Analytics and Environmental Quality GroupUniversity of NavarraPamplonaSpain
| | - Stephanie M. Carlson
- Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCalifornia
| | | | - Núria Cid
- Grup de Recerca Freshwater Ecology, Hydrology and Management (FEHM)Departament de Biologia EvolutivaEcologia i Ciències AmbientalsInstitut de Recerca de la Biodiversitat (IRBio)Universitat de BarcelonaBarcelonaSpain
| | | | | | - Anna Maria De Girolamo
- Water Research Institute – National Research Council (IRSA‐CNR)Montelibretti (Rome)Italy
| | - Ruben del Campo
- Leibniz‐Institute of Freshwater Ecology and Inland Fisheries (IGB)BerlinGermany
- Department of Ecology and HydrologyRegional Campus of International Excellence ‘Campus Mare Nostrum’ – University of MurciaMurciaSpain
| | - Fiona Dyer
- Institute for Applied EcologyUniversity of CanberraBruceCanberra ACTAustralia
| | - Arturo Elosegi
- Department of Plant Biology and EcologyFaculty of Science and TechnologyUniversity of the Basque Country (UPV/EHU)BilbaoSpain
| | - Emile Faye
- Centre International de Recherche en Agronomie pour le DéveloppementCIRADUPR HortSysMontpellierFrance
| | - Catherine Febria
- School of Biological SciencesUniversity of CanterburyChristchurchNew Zealand
- Great Lakes Institute for Environmental ResearchUniversity of WindsorWindsorCanada
| | - Ricardo Figueroa
- Faculty of Environmental Science and EULA‐Chile CenterUniversidad de ConcepciónConcepciónChile
| | - Brian Four
- INRAUAR 1275 DEPT EFPACentre de recherche de NancyChampenouxFrance
| | - Mark O. Gessner
- Leibniz‐Institute of Freshwater Ecology and Inland Fisheries (IGB)BerlinGermany
- Department of EcologyBerlin Institute of Technology (TU Berlin)BerlinGermany
| | - Pierre Gnohossou
- Faculté d'AgronomieDépartement d'Aménagement et de Gestion des Ressources NaturellesUniversité de ParakouParakouBenin
| | - Rosa Gómez Cerezo
- Department of Ecology and HydrologyRegional Campus of International Excellence ‘Campus Mare Nostrum’ – University of MurciaMurciaSpain
| | - Lluís Gomez‐Gener
- Department of Ecology and Environmental ScienceUmeå UniversityUmeåSweden
| | - Manuel A.S. Graça
- MARE – Marine and Environmental Sciences CentreDepartment of Life SciencesUniversity of CoimbraCoimbraPortugal
| | - Simone Guareschi
- Department of Ecology and HydrologyRegional Campus of International Excellence ‘Campus Mare Nostrum’ – University of MurciaMurciaSpain
| | - Björn Gücker
- Department of GeosciencesFederal University of São João del‐ReiSão João del‐ReiBrazil
| | - Jason L. Hwan
- Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCalifornia
| | | | - Simone Daniela Langhans
- Department of ZoologyUniversity of OtagoDunedinNew Zealand
- BC3‐Basque Centre for Climate ChangeLeioaSpain
| | - Catherine Leigh
- Australian Rivers InstituteGriffith UniversityNathanQldAustralia
- ARC Centre of Excellence for Mathematical & Statistical Frontiers (ACEMS) and Institute for Future EnvironmentsSchool of Mathematical SciencesQueensland University of TechnologyBrisbaneQldAustralia
| | - Chelsea J. Little
- Department of Evolutionary Biology and Environmental StudiesUniversity of ZurichZürichSwitzerland
- Department of Aquatic Ecology, EawagThe Swiss Federal Institute of Aquatic Science and TechnologyDübendorfSwitzerland
| | - Stefan Lorenz
- Institute for Ecological ChemistryPlant Analysis and Stored Product ProtectionJulius‐Kuehn‐InstituteBerlinGermany
| | - Jonathan Marshall
- Department of Environment and ScienceQueensland GovernmentBrisbaneQldAustralia
- Australian Rivers InstituteGriffith UniversityNathanQldAustralia
| | - Angus McIntosh
- School of Biological SciencesUniversity of CanterburyChristchurchNew Zealand
| | - Clara Mendoza‐Lera
- IRSTEAUR RIVERLYCentre de Lyon‐VilleurbanneVilleurbanne CedexFrance
- Department of Freshwater ConservationBTU Cottbus‐SenftenbergBad SaarowGermany
| | | | - Marko Miliša
- Department of BiologyFaculty of ScienceUniversity of ZagrebZagrebCroatia
| | - Musa C. Mlambo
- Department of Freshwater InvertebratesAlbany MuseumAffiliated Research Institute of Rhodes UniversityGrahamstownSouth Africa
| | - Marcos Moleón
- Department of ZoologyUniversity of GranadaGranadaSpain
| | - Peter Negus
- Department of Environment and ScienceQueensland GovernmentBrisbaneQldAustralia
| | - Dev Niyogi
- Missouri University of Science and TechnologyRollaMissouri
| | | | - Isabel Pardo
- Departamento de Ecología y Biología AnimalUniversidad de VigoVigoSpain
| | - Petr Paril
- Department of Botany and ZoologyFaculty of ScienceMasaryk UniversityBrnoCzech Republic
| | - Vladimir Pešić
- Department of BiologyUniversity of MontenegroPodgoricaMontenegro
| | - Pablo Rodriguez‐Lozano
- Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCalifornia
| | - Robert J. Rolls
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNSWAustralia
| | - Maria Mar Sanchez‐Montoya
- Department of Ecology and HydrologyRegional Campus of International Excellence ‘Campus Mare Nostrum’ – University of MurciaMurciaSpain
| | - Ana Savić
- Department of Biology and EcologyFaculty of Sciences and MathematicsUniversity of NišNišSerbia
| | - Alisha Steward
- Department of Environment and ScienceQueensland GovernmentBrisbaneQldAustralia
- Australian Rivers InstituteGriffith UniversityNathanQldAustralia
| | | | - Amina Taleb
- Laboratoire d’Écologie et Gestion des Ecosystèmes Naturels (LECGEN)University of TlemcenTlemcenAlgeria
| | - Ross Vander Vorste
- Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCalifornia
| | - Nathan Waltham
- TropWATER (Centre for Tropical Water and Aquatic Ecosystem Research)College of Science and EngineeringJames Cook UniversityTownsvilleQldAustralia
| | - Annamaria Zoppini
- Water Research Institute – National Research Council (IRSA‐CNR)Montelibretti (Rome)Italy
| | - Christiane Zarfl
- Center for Applied GeosciencesEberhard Karls Universität TübingenTübingenGermany
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9
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Oprei A, Zlatanović S, Mutz M. Grazers superimpose humidity effect on stream biofilm resistance and resilience to dry-rewet stress. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 659:841-850. [PMID: 31096414 DOI: 10.1016/j.scitotenv.2018.12.316] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Revised: 12/17/2018] [Accepted: 12/21/2018] [Indexed: 06/09/2023]
Abstract
Temperate low order streams increasingly experience intermittency and drying due to climate change. In comparison to well-studied Mediterranean streams, drying events in canopied temperate streams occur under higher ambient humidity which probably affects the metabolic response to drying. Previous work on drying sediments (in temperate streams) did not consider the interactions of trophic levels. We hypothesized that preservation of sediment moisture due to high humidity increases resistance to drying in temperate streambed biofilms and fast resilience of biofilm activity after flow resumption. We also expected the presence of macroinvertebrate grazers to modulate the biofilm response to dry-rewet stress. Following a two-level factorial design in 24 microcosms, we tested the effect of drying intensity (moderate and intense) and grazer presence and absence (P. antipodarum) on the activity of biofilm colonizing shallow hyporheic sediment. We measured the community respiration over a drying period of 27 days, a single rewetting event and a follow-up of three days. Grazer presence stimulated biofilm community respiration (CRmic) in the permanently wet control, but decreased biofilm resistance to desiccation (<0.2% of pre-disturbed activity), regardless of drying intensity. In the absence of grazers, higher atmospheric humidity in moderately drying microcosms resulted in maintaining a film of adhesive water and low CRmic (29% of pre-disturbed respiration) until the end of the drying period. After flow resumption, the CRmic increased within 8 h, achieving 79-83% of pre-disturbed respiration (no grazers) and 15-41% (with grazers), respectively. Results show that short dry periods in temperate streams, even under high humidity, impact the streambed biofilm community negatively. The complex response and strong effect of grazer presence indicates that experiments including interactions of trophic levels and settings mimicking environmental factors during dry-rewet stress are needed.
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Affiliation(s)
- Anna Oprei
- Department of Freshwater Conservation, BTU-Cottbus Senftenberg, 15526 Bad Saarow, Germany.
| | - Sanja Zlatanović
- Department of Freshwater Conservation, BTU-Cottbus Senftenberg, 15526 Bad Saarow, Germany
| | - Michael Mutz
- Department of Freshwater Conservation, BTU-Cottbus Senftenberg, 15526 Bad Saarow, Germany
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10
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Arce MI, von Schiller D, Bengtsson MM, Hinze C, Jung H, Alves RJE, Urich T, Singer G. Drying and Rainfall Shape the Structure and Functioning of Nitrifying Microbial Communities in Riverbed Sediments. Front Microbiol 2018; 9:2794. [PMID: 30519221 PMCID: PMC6250940 DOI: 10.3389/fmicb.2018.02794] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 10/30/2018] [Indexed: 11/13/2022] Open
Abstract
Non-flow periods in fluvial ecosystems are a global phenomenon. Streambed drying and rewetting by sporadic rainfalls could drive considerable changes in the microbial communities that govern stream nitrogen (N) availability at different temporal and spatial scales. We performed a microcosm-based experiment to investigate how dry period duration (DPD) (0, 3, 6, and 9 weeks) and magnitude of sporadic rewetting by rainfall (0, 4, and 21 mm applied at end of dry period) affected stocks of N in riverbed sediments, ammonia-oxidizing bacteria (AOB) and archaea (AOA) and rates of ammonia oxidation (AO), and emissions of nitrous oxide (N2O) to the atmosphere. While ammonium (NH4 +) pool size decreased, nitrate (NO3 -) pool size increased in sediments with progressive drying. Concomitantly, the relative and absolute abundance of AOB and, especially, AOA (assessed by 16S rRNA gene sequencing and quantitative PCR of ammonia monooxygenase genes) increased, despite an apparent decrease of AO rates with drying. An increase of N2O emissions occurred at early drying before substantially dropping until the end of the experiment. Strong rainfall of 21 mm increased AO rates and NH4 + in sediments, whereas modest rainfall of 4 mm triggered a notable increase of N2O fluxes. Interestingly, such responses were detected only after 6 and 9 weeks of drying. Our results demonstrate that progressive drying drives considerable changes in in-stream N cycling and the associated nitrifying microbial communities, and that sporadic rainfall can modulate these effects. Our findings are particularly relevant for N processing and transport in rivers with alternating dry and wet phases - a hydrological scenario expected to become more important in the future.
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Affiliation(s)
- Maria Isabel Arce
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - Daniel von Schiller
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - Mia M. Bengtsson
- Institute of Microbiology, University of Greifswald, Greifswald, Germany
| | - Christian Hinze
- Institute of Microbiology, University of Greifswald, Greifswald, Germany
| | - Hoseung Jung
- Integrative Research Institute on Transformations of Human-Environment Systems (IRI THESys), Humboldt University of Berlin, Berlin, Germany
| | - Ricardo J. Eloy Alves
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Tim Urich
- Institute of Microbiology, University of Greifswald, Greifswald, Germany
| | - Gabriel Singer
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
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11
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Skoulikidis NT, Vardakas L, Amaxidis Y, Michalopoulos P. Biogeochemical processes controlling aquatic quality during drying and rewetting events in a Mediterranean non-perennial river reach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 575:378-389. [PMID: 27750134 DOI: 10.1016/j.scitotenv.2016.10.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Revised: 09/30/2016] [Accepted: 10/01/2016] [Indexed: 06/06/2023]
Abstract
Desiccation and re-flooding processes play a key role on hydrological features of non-perennial rivers. This study addresses the effects of these processes on the aquatic quality and unravels underlying biogeochemical processes of an intermittent river reach in southern Greece containing a spring-fed pool. Combined spatio-temporal sampling for physicochemical parameters, major ions and nutrients and high frequency automatic monitoring during a hydrological year (2010-2011) indicate that during the dry period, solute variation was controlled by "concentration" processes (i.e. evaporative concentration and high dissolved ion input from base flow sources). Metabolic and "concentration" processes appear intensified during desiccation and water temperature rise. Photosynthesis induced carbonate precipitation, while respiration increased with gradual desiccation, but did not cause carbonate dissolution. In certain cases, photosynthesis and respiration may have occurred simultaneously as a result of differing microhabitat metabolism within the same water body. However, during the entire desiccation cycle, autotrophic production exceeded respiration resulting in relatively high oxygen concentrations, even during the night. With increasing desiccation, a rise in nutrient assimilation occurred as well as ammonification and/or desorption of ammonium from sediments, with simultaneous loss of nitrate. During initial floods, flushing of carbonate phases was not significant. In contrast, initial flood events were characterized by the dissolution of very soluble salts, i.e. epsomite-type (MgSO4∗7H2O) and gypsum (CaSO4∗2H2O). Regarding sediment transport and nutrients, a 1000-times increase of suspended sediments was observed during re-flooding, while the nutrient quality degraded, particularly for N-species. Results of the current research may serve to better understand the links of hydrological and biogeochemical processes in non-perennial rivers and streams towards their efficient management and conservation.
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Affiliation(s)
- Nikolaos Th Skoulikidis
- Institute of Marine Biological Resources & Inland Waters, Hellenic Centre for Marine Research, 46.7km Athens-Souniou Av., P.O. 19013, Anavissos, Attica, Greece
| | - Leonidas Vardakas
- Institute of Marine Biological Resources & Inland Waters, Hellenic Centre for Marine Research, 46.7km Athens-Souniou Av., P.O. 19013, Anavissos, Attica, Greece.
| | - Yorgos Amaxidis
- Institute of Marine Biological Resources & Inland Waters, Hellenic Centre for Marine Research, 46.7km Athens-Souniou Av., P.O. 19013, Anavissos, Attica, Greece
| | - Panagiotis Michalopoulos
- Institute of Oceanography, Hellenic Centre for Marine Research, 46.7km Athens-Souniou Av., P.O. 19013, Anavissos, Attica, Greece
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