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Bolivar JM, Woodley JM, Fernandez-Lafuente R. Is enzyme immobilization a mature discipline? Some critical considerations to capitalize on the benefits of immobilization. Chem Soc Rev 2022; 51:6251-6290. [PMID: 35838107 DOI: 10.1039/d2cs00083k] [Citation(s) in RCA: 105] [Impact Index Per Article: 52.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Enzyme immobilization has been developing since the 1960s and although many industrial biocatalytic processes use the technology to improve enzyme performance, still today we are far from full exploitation of the field. One clear reason is that many evaluate immobilization based on only a few experiments that are not always well-designed. In contrast to many other reviews on the subject, here we highlight the pitfalls of using incorrectly designed immobilization protocols and explain why in many cases sub-optimal results are obtained. We also describe solutions to overcome these challenges and come to the conclusion that recent developments in material science, bioprocess engineering and protein science continue to open new opportunities for the future. In this way, enzyme immobilization, far from being a mature discipline, remains as a subject of high interest and where intense research is still necessary to take full advantage of the possibilities.
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Affiliation(s)
- Juan M Bolivar
- FQPIMA group, Chemical and Materials Engineering Department, Faculty of Chemical Sciences, Complutense University of Madrid, Madrid, 28040, Spain
| | - John M Woodley
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.
| | - Roberto Fernandez-Lafuente
- Departamento de Biocatálisis. ICP-CSIC, C/Marie Curie 2, Campus UAM-CSIC Cantoblanco, Madrid 28049, Spain. .,Center of Excellence in Bionanoscience Research, External Scientific Advisory Academic, King Abdulaziz University, Jeddah 21589, Saudi Arabia
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2
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Carnero A, Martín-Nieves V, Sanghvi YS, Russel OO, Bassit L, Schinazi RF, Fernández S, Ferrero M. Novel 1′-homo-N-2′-deoxy-α-nucleosides: synthesis, characterization and biological activity. RSC Adv 2020; 10:15815-15824. [PMID: 34603689 PMCID: PMC8486263 DOI: 10.1039/d0ra03254a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
For the first time, a series of novel 1′-homo-N-2′-deoxy-α-nucleosides containing natural nucleobases as well as 5-fluoro and 5-iodopyrimidine analogs have been synthesized in an efficient manner. Additionally, a high yield protocol for the assembly of a dimeric scaffold containing two sugar moieties linked to the N-1 and N-3 positions of a single pyrimidine base has been accomplished. The structures of the novel homonucleosides were established by a single crystal X-ray structure of 1′-homo-N-2′-deoxy-α-adenosine and NMR studies. The biological activity of these 1′-homo-N-2′-deoxy-α-nucleosides as antiviral (HIV-1 and HBV) and cytotoxic studies was measured in multiple cell systems. The unique structure and easy accessibility of these compounds may allow their use in the design of new nucleoside analogs with potential biological activity and as a scaffold for combinatorial chemistry. Novel 1′-homo-N-2′-deoxy-α-nucleosides and dimers.![]()
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Affiliation(s)
- Alejandro Carnero
- Departamento de Química Orgánica e Inorgánica
- Universidad de Oviedo
- 33006-Oviedo
- Spain
| | | | | | - Olivia O. Russel
- Center for AIDS Research
- Laboratory of Biochemical Pharmacology
- Department of Pediatrics
- Emory University School of Medicine
- Atlanta
| | - Leda Bassit
- Center for AIDS Research
- Laboratory of Biochemical Pharmacology
- Department of Pediatrics
- Emory University School of Medicine
- Atlanta
| | - Raymond F. Schinazi
- Center for AIDS Research
- Laboratory of Biochemical Pharmacology
- Department of Pediatrics
- Emory University School of Medicine
- Atlanta
| | - Susana Fernández
- Departamento de Química Orgánica e Inorgánica
- Universidad de Oviedo
- 33006-Oviedo
- Spain
| | - Miguel Ferrero
- Departamento de Química Orgánica e Inorgánica
- Universidad de Oviedo
- 33006-Oviedo
- Spain
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Kumar R, Kumar V, Mathur D, Kumar R, Kumar A, Prasad AK. Biocatalyst CAL-B catalyzed synthesis of modified nucleosides: An overview. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2018.1554745] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Rajesh Kumar
- Department of Chemistry, R.D.S. College, B.R.A. Bihar University, Muzaffarpur, India
| | - Vijay Kumar
- Department of Chemistry, L.S. College, B.R.A. Bihar University, Muzaffarpur, India
| | - Divya Mathur
- Department of Chemistry, University of Delhi, Delhi, India
| | - Ram Kumar
- Department of Chemistry, R.D.S. College, B.R.A. Bihar University, Muzaffarpur, India
| | - Arbind Kumar
- Department of Chemistry, L.S. College, B.R.A. Bihar University, Muzaffarpur, India
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Hu YD, Zong MH, Li N. Enzymatic synthesis and anti-oxidative activities of plant oil-based ascorbyl esters in 2-methyltetrahydrofuran-containing mixtures. BIOCATAL BIOTRANSFOR 2016. [DOI: 10.1080/10242422.2016.1247820] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Ying-Dan Hu
- School of Food Science and Technology, South China University of Technology, Guangzhou, PR China
| | - Min-Hua Zong
- School of Food Science and Technology, South China University of Technology, Guangzhou, PR China
| | - Ning Li
- School of Food Science and Technology, South China University of Technology, Guangzhou, PR China
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Carnero A, Sanghvi YS, Gotor V, Fernández S, Ferrero M. Process Development of Biocatalytic Regioselective 5′-O-Levulinylation of 2′-Deoxynucleosides. Org Process Res Dev 2015. [DOI: 10.1021/acs.oprd.5b00152] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alejandro Carnero
- Departamento
de Química Orgánica e Inorgánica and Instituto
Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006 Oviedo, Asturias, Spain
| | - Yogesh S. Sanghvi
- Rasayan Inc., 2802 Crystal
Ridge Road, Encinitas, California 92024-6615, United States
| | - Vicente Gotor
- Departamento
de Química Orgánica e Inorgánica and Instituto
Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006 Oviedo, Asturias, Spain
| | - Susana Fernández
- Departamento
de Química Orgánica e Inorgánica and Instituto
Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006 Oviedo, Asturias, Spain
| | - Miguel Ferrero
- Departamento
de Química Orgánica e Inorgánica and Instituto
Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006 Oviedo, Asturias, Spain
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Iglesias LE, Lewkowicz ES, Medici R, Bianchi P, Iribarren AM. Biocatalytic approaches applied to the synthesis of nucleoside prodrugs. Biotechnol Adv 2015; 33:412-34. [PMID: 25795057 DOI: 10.1016/j.biotechadv.2015.03.009] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Revised: 03/01/2015] [Accepted: 03/04/2015] [Indexed: 10/23/2022]
Abstract
Nucleosides are valuable bioactive molecules, which display antiviral and antitumour activities. Diverse types of prodrugs are designed to enhance their therapeutic efficacy, however this strategy faces the troublesome selectivity issues of nucleoside chemistry. In this context, the aim of this review is to give an overview of the opportunities provided by biocatalytic procedures in the preparation of nucleoside prodrugs. The potential of biocatalysis in this research area will be presented through examples covering the different types of nucleoside prodrugs: nucleoside analogues as prodrugs, nucleoside lipophilic prodrugs and nucleoside hydrophilic prodrugs.
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Affiliation(s)
- Luis E Iglesias
- Laboratorio de Biocatálisis y Biotransformaciones, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, 1876 Bernal, Buenos Aires, Argentina
| | - Elizabeth S Lewkowicz
- Laboratorio de Biocatálisis y Biotransformaciones, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, 1876 Bernal, Buenos Aires, Argentina
| | - Rosario Medici
- Biocatalysis Group, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
| | - Paola Bianchi
- Laboratorio de Biocatálisis y Biotransformaciones, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, 1876 Bernal, Buenos Aires, Argentina
| | - Adolfo M Iribarren
- Laboratorio de Biocatálisis y Biotransformaciones, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, 1876 Bernal, Buenos Aires, Argentina; Laboratorio de Química de Ácidos Nucleicos, INGEBI-CONICET, Vuelta de Obligado 2490, 1428 Ciudad Autónoma de Buenos Aires, Argentina.
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Hu YD, Qin YZ, Li N, Zong MH. Highly efficient enzymatic synthesis of an ascorbyl unstaturated fatty acid ester with ecofriendly biomass-derived 2-methyltetrahydrofuran as cosolvent. Biotechnol Prog 2014; 30:1005-11. [DOI: 10.1002/btpr.1936] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2014] [Revised: 04/10/2014] [Indexed: 01/26/2023]
Affiliation(s)
- Ying-Dan Hu
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Sciences; South China University of Technology; Guangzhou 510640 China
- College of Biosciences and Bioengineering; South China University of Technology; Guangzhou 510006 China
| | - Ye-Zhi Qin
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Sciences; South China University of Technology; Guangzhou 510640 China
| | - Ning Li
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Sciences; South China University of Technology; Guangzhou 510640 China
| | - Min-Hua Zong
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Sciences; South China University of Technology; Guangzhou 510640 China
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Nagoya-Goldmedaille: B. L. Feringa / Nagoya-Silbermedaille: N. Chatani / MacArthur Fellowship: Phil S. Baran / Ehrendoktorwürde: R. Kniep / Herty Medal: D. G. Lynn / Premio de la Real Academia de Ciencias: V. Gotor / Akademiepreis für Chemie: M. Alcarazo. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201307536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Nagoya Gold Medal: B. L. Feringa / Nagoya Silver Medal: N. Chatani / MacArthur Fellowship: Phil S. Baran / Honorary Doctorate: R. Kniep / Herty Medal: D. G. Lynn / Premio de la Real Academia de Ciencias: V. Gotor / Akademiepreis für Chemie: M. Alcarazo /. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/anie.201307536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Lu X, Li L, Yang W, Jiang K, Yang KF, Zheng ZJ, Xu LW. Catalytic Synthesis of Functional Silicon-Stereogenic Silanes throughCandida antarcticaLipase B Catalyzed Remote Desymmetrization of Silicon-Centered Diols. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300932] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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