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Karhan C, Sake SM, Gunesch AP, Grethe C, Hellwinkel B, Köhler NM, Kiefer AF, Hapko U, Kany AM, Pietschmann T, Hirsch AKH. Unlocking the antiviral arsenal: Structure-guided optimization of small-molecule inhibitors against RSV and hCoV-229E. Eur J Med Chem 2025; 291:117282. [PMID: 40199027 DOI: 10.1016/j.ejmech.2025.117282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 12/20/2024] [Accepted: 01/13/2025] [Indexed: 04/10/2025]
Abstract
Acute respiratory diseases in humans can be caused by various viral pathogens such as respiratory syncytial virus (RSV), human coronavirus 229E (hCoV-229E), and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To prevent severe cases by an early treatment, one effective strategy is to inhibit viral infection at the entry stage of the replication cycle. However, there is a lack of efficient, FDA-approved small-molecule drugs targeting these pathogens. Previously, we identified two dual RSV/hCoV-229E small-molecule inhibitors with activity in the single-digit micromolar range. In this study, we focused on a structure-guided optimization approach of the more promising prototype addressing activity, cell viability, selectivity, solubility and metabolic stability. We present valuable insights into the structure-activity relationship (SAR), and report the discovery of a sub-micromolar RSV entry inhibitor, a dual RSV/CoV-229E inhibitor and a highly potent compound against hCoV-229E.
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Affiliation(s)
- Christina Karhan
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123, Saarbrücken, Germany; Saarland University, Department of Pharmacy, Campus Building E8.1, 66123, Saarbrücken, Germany
| | - Svenja M Sake
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany
| | - Antonia P Gunesch
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany
| | - Christina Grethe
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany
| | - Benedikt Hellwinkel
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany
| | - Natalie M Köhler
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany
| | - Alexander F Kiefer
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123, Saarbrücken, Germany
| | - Uladzislau Hapko
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123, Saarbrücken, Germany; Saarland University, Department of Pharmacy, Campus Building E8.1, 66123, Saarbrücken, Germany
| | - Andreas M Kany
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123, Saarbrücken, Germany
| | - Thomas Pietschmann
- TWINCORE, Centre for Experimental and Clinical Infection Research, a Joint Venture Between the Helmholtz Centre for Infection Research and the Hannover Medical School, Feodor-Lynen-Str. 7, 30625, Hannover, Germany; German Centre for Infection Research (DZIF), Inhoffenstr. 7, 38124, Braunschweig, Germany; Helmholtz International Lab for Anti-Infectives, Campus E8.1, 66123, Saarbrücken, Germany; Cluster of Excellence RESIST (EXC 2155), Hanover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany
| | - Anna K H Hirsch
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123, Saarbrücken, Germany; Saarland University, Department of Pharmacy, Campus Building E8.1, 66123, Saarbrücken, Germany; Helmholtz International Lab for Anti-Infectives, Campus E8.1, 66123, Saarbrücken, Germany; Cluster of Excellence RESIST (EXC 2155), Hanover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany.
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Dimitrijević MŽ, Mladenović MZ, Nešić MD, Dekić MS, Raičević VN, Radulović NS. New Oxygenated Methoxy- p-Cymene Derivatives from Leopard's Bane ( Doronicum columnae Ten., Asteraceae) Essential Oil: Synthesis Facilitating the Identification of Isomeric Minor Constituents in Complex Matrices. Molecules 2025; 30:302. [PMID: 39860172 PMCID: PMC11767694 DOI: 10.3390/molecules30020302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 01/09/2025] [Accepted: 01/10/2025] [Indexed: 01/27/2025] Open
Abstract
Species of the genus Doronicum are known for their pharmacological properties and essential oils, the chemical composition of which remains inadequately studied. In this work, GC-MS analysis, synthesis, and spectral techniques (UV, IR, MS, and NMR) were employed to identify 83 constituents in the essential oil from D. columnae roots, which accounted for 98.1% of the total GC-peak area. The major components were thymyl isobutyrate (32.8%) and thymyl 2-methylbutyrate (22.8%), while the minor constituents were methoxy-p-cymene derivatives. Six new natural products were identified through synthesis, GC co-injection experiments and spectral characterization, including esters (isobutyrate, 2-methylbutyrate, and/or isovalerate) of 2-methoxycuminol, 6-methoxythymol, and 6-hydroxythymyl methyl ether, as well as methyl 3-methoxycuminate. Their identification was made possible by synthesis efforts, as isolating pure compounds was impracticable because of their low abundance and the overall structural similarity within the highly complex mixture that was the essential oil.
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Affiliation(s)
- Milan Ž. Dimitrijević
- Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33, 18000 Niš, Serbia; (M.Ž.D.); (M.Z.M.); (M.D.N.)
| | - Marko Z. Mladenović
- Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33, 18000 Niš, Serbia; (M.Ž.D.); (M.Z.M.); (M.D.N.)
- Department of Sciences and Mathematics, State University of Novi Pazar, Vuka Karadžića 9, 36300 Novi Pazar, Serbia;
| | - Milica D. Nešić
- Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33, 18000 Niš, Serbia; (M.Ž.D.); (M.Z.M.); (M.D.N.)
| | - Milan S. Dekić
- Department of Sciences and Mathematics, State University of Novi Pazar, Vuka Karadžića 9, 36300 Novi Pazar, Serbia;
| | - Vidak N. Raičević
- Faculty of Medicine, University of Novi Sad, Hajduk Veljkova 3, 21000 Novi Sad, Serbia;
| | - Niko S. Radulović
- Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33, 18000 Niš, Serbia; (M.Ž.D.); (M.Z.M.); (M.D.N.)
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Shirley HJ, Bray CD. A biomimetic approach towards phorone sesterterpenoids. Org Biomol Chem 2019; 17:6985-6988. [PMID: 31290533 DOI: 10.1039/c9ob00745h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report an investigation towards a unified total synthesis of the Korean sponge derived sesterterpenoids, phorones A (1) and B (2), via a biomimetic strategy. This work has established a new synthetic strategy to the parent ansellane sesterterpenoid skeleton with unanticipated diversion to a biogenetically related pathway.
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Affiliation(s)
- Harry J Shirley
- The School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
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A natural product from Cannabis sativa subsp. sativa inhibits homeodomain-interacting protein kinase 2 (HIPK2), attenuating MPP + -induced apoptosis in human neuroblastoma SH-SY5Y cells. Bioorg Chem 2017; 72:64-73. [DOI: 10.1016/j.bioorg.2017.03.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Revised: 03/09/2017] [Accepted: 03/21/2017] [Indexed: 12/27/2022]
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Diastereoselective hydrogenation of α,β-unsaturated but-2-enamides to access the chiral 3-(p-tolyl) butanoic acids. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2016.12.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Coffinier R, Assal ME, Peixoto PA, Bosset C, Miqueu K, Sotiropoulos JM, Pouységu L, Quideau S. Total Synthesis of (−)-Bacchopetiolone via an Asymmetric Hydroxylative Phenol Dearomatization/[4+2]-Dimerization Cascade Promoted by a Novel Salen-Type Chiral Iodane. Org Lett 2016; 18:1120-3. [DOI: 10.1021/acs.orglett.6b00224] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Romain Coffinier
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
| | - Mourad El Assal
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
| | - Philippe A. Peixoto
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
| | - Cyril Bosset
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
| | - Karinne Miqueu
- Univ. Pau et Pays de l’Adour, IPREM (CNRS-UMR
5254), Hélioparc,
2 avenue Pierre Angot, Pau F-64053 Cedex 09, France
| | - Jean-Marc Sotiropoulos
- Univ. Pau et Pays de l’Adour, IPREM (CNRS-UMR
5254), Hélioparc,
2 avenue Pierre Angot, Pau F-64053 Cedex 09, France
| | - Laurent Pouységu
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
| | - Stéphane Quideau
- Univ. Bordeaux, ISM (CNRS-UMR 5255), 351 cours de la Libération, Talence F-33405 Cedex, France
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Feng J, Zhu G, Liu B, Zhou X. Expedient Synthesis of (R)-Curcuphenol: A Chiral Pool Strategy. CHINESE J CHEM 2012. [DOI: 10.1002/cjoc.201201024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Shafioul ASM, Cheong CS. Lipase Catalyzed Kinetic Resolution of rac-2-(3-Methoxy-4-methylphenyl) propan-1-ol and rac-2-(3-Hydroxy-4-methylphenyl)propyl propanoate for S-(+)-Xanthorrhizol. B KOREAN CHEM SOC 2012. [DOI: 10.5012/bkcs.2012.33.2.409] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Plano MF, Labadie GR, Jacob MR, Tekwani BL, Cravero RM. An entry to curcuphenol/elvirol core structures via a retro-Aldol reaction. Chem Biodivers 2011; 8:1098-111. [PMID: 21674782 PMCID: PMC3691859 DOI: 10.1002/cbdv.201000160] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Analogs of curcuphenol/elvirol, naturally occurring bisabolane sesquiterpenes, were prepared in six steps from alkyl-α-tetralones employing an aromatization reaction of cyclic dienone precursors and olefination of the key aldehyde intermediates. The in vitro antifungal activities of 6a, 6b, 6d, and 6g are also reported.
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Affiliation(s)
- María F. Plano
- Instituto de Química Rosario (IQUIR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario. Suipacha 531, S2002LRK-Rosario, ARGENTINA
| | - Guillermo R. Labadie
- Instituto de Química Rosario (IQUIR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario. Suipacha 531, S2002LRK-Rosario, ARGENTINA
| | - Melissa R. Jacob
- National Center for Natural Products Research, School of Pharmacy, University of Mississippi, University, MS 38677, USA
| | - Babu L. Tekwani
- National Center for Natural Products Research, School of Pharmacy, University of Mississippi, University, MS 38677, USA
| | - Raquel M. Cravero
- Instituto de Química Rosario (IQUIR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario. Suipacha 531, S2002LRK-Rosario, ARGENTINA
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Abstract
A facile total synthesis of the bisabolane sesquiterpene, xanthorrhizol (1), has been achieved in 6 steps, in 48% overall yield. The starting material was 3-methoxy-4-methyl-phenoacetone (7), and a Claisen-Johnson rearrangement was used as the key step to construct the skeleton of the target molecule.
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Affiliation(s)
- Zhenting Du
- College of Science, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Talimu University, Alaer, Xinjiang, 843300, China
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