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Continuous Detection of Increasing Concentrations of Thrombin Employing a Label-Free Photonic Crystal Aptasensor. MICROMACHINES 2020; 11:mi11050464. [PMID: 32354154 PMCID: PMC7281654 DOI: 10.3390/mi11050464] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 04/23/2020] [Accepted: 04/27/2020] [Indexed: 02/07/2023]
Abstract
Thrombin generation is a complex and finely regulated pathway that provokes dynamical changes of thrombin concentration in blood when a vascular injury occurs. In order to characterize the initiation phase of such process, when thrombin concentration is in the nM range, a label-free optical aptasensor is proposed here. This aptasensor combines a 1D photonic crystal structure consisting of a silicon corrugated waveguide with thrombin binding aptamers on its surface as bioreceptors. As a result, this aptasensor has been demonstrated to specifically detect thrombin concentrations ranging from 270 pM to 27 nM with an estimated detection limit of 33.5 pM and a response time of ~2 min. Furthermore, it has also been demonstrated that this aptasensor is able to continuously respond to consecutive increasing concentrations of thrombin and to detect binding events as they occur. All these features make this aptasensor a good candidate to continuously study how thrombin concentration progressively increases during the initiation phase of the coagulation cascade.
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Pastor-Navarro B, García-Flores M, Fernández-Serra A, Blanch-Tormo S, Martínez de Juan F, Martínez-Lapiedra C, Maia de Alcantara F, Peñalver JC, Cervera-Deval J, Rubio-Briones J, García-Rupérez J, López-Guerrero JA. A Tetra-Panel of Serum Circulating miRNAs for the Diagnosis of the Four Most Prevalent Tumor Types. Int J Mol Sci 2020; 21:ijms21082783. [PMID: 32316350 PMCID: PMC7215589 DOI: 10.3390/ijms21082783] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 04/09/2020] [Accepted: 04/15/2020] [Indexed: 12/18/2022] Open
Abstract
The purpose of this study is to clinically validate a series of circulating miRNAs that distinguish between the 4 most prevalent tumor types (lung cancer (LC); breast cancer (BC); colorectal cancer (CRC); and prostate cancer (PCa)) and healthy donors (HDs). A total of 18 miRNAs and 3 housekeeping miRNA genes were evaluated by qRT-PCR on RNA extracted from serum of cancer patients, 44 LC, 45 BC, 27 CRC, and 40 PCa, and on 45 HDs. The cancer detection performance of the miRNA expression levels was evaluated by studying the area under the curve (AUC) of receiver operating characteristic (ROC) curves at univariate and multivariate levels. miR-21 was significantly overexpressed in all cancer types compared with HDs, with accuracy of 67.5% (p = 0.001) for all 4 tumor types and of 80.8% (p < 0.0001) when PCa cases were removed from the analysis. For each tumor type, a panel of miRNAs was defined that provided cancer-detection accuracies of 91%, 94%, 89%, and 77%, respectively. In conclusion, we have described a series of circulating miRNAs that define different tumor types with a very high diagnostic performance. These panels of miRNAs would constitute the basis of different approaches of cancer-detection systems for which clinical utility should be validated in prospective cohorts.
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Affiliation(s)
- Belén Pastor-Navarro
- Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (B.P.-N.); (M.G.-F.); (A.F.-S.)
| | - María García-Flores
- Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (B.P.-N.); (M.G.-F.); (A.F.-S.)
- IVO-CIPF Joint Research Unit of Cancer, Príncipe Felipe Research Center (CIPF), 46012 Valencia, Spain
| | - Antonio Fernández-Serra
- Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (B.P.-N.); (M.G.-F.); (A.F.-S.)
- IVO-CIPF Joint Research Unit of Cancer, Príncipe Felipe Research Center (CIPF), 46012 Valencia, Spain
| | - Salvador Blanch-Tormo
- Department of Medical Oncology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain;
| | - Fernando Martínez de Juan
- Unit of Gastroenterology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (F.M.d.J.); (C.M.-L.); (F.M.d.A.)
| | - Carmen Martínez-Lapiedra
- Unit of Gastroenterology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (F.M.d.J.); (C.M.-L.); (F.M.d.A.)
| | - Fernanda Maia de Alcantara
- Unit of Gastroenterology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (F.M.d.J.); (C.M.-L.); (F.M.d.A.)
| | - Juan Carlos Peñalver
- Department of Thoracic Surgery, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain;
| | - José Cervera-Deval
- Department of Radiology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain;
| | - José Rubio-Briones
- Department of Urology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain;
| | - Jaime García-Rupérez
- Nanophotonics Technology Center, Universitat Politècnica de València, 46022 Valencia, Spain;
| | - José Antonio López-Guerrero
- Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, 46009 Valencia, Spain; (B.P.-N.); (M.G.-F.); (A.F.-S.)
- IVO-CIPF Joint Research Unit of Cancer, Príncipe Felipe Research Center (CIPF), 46012 Valencia, Spain
- Department of Pathology, School of Medicine, Catholic University of Valencia ‘San Vicente Mártir’, 46001 Valencia, Spain
- Correspondence: ; Tel.: +34-961114337; +34-961104039
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Ma Y, Dong B, Lee C. Progress of infrared guided-wave nanophotonic sensors and devices. NANO CONVERGENCE 2020; 7:12. [PMID: 32239361 PMCID: PMC7113365 DOI: 10.1186/s40580-020-00222-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 03/12/2020] [Indexed: 06/01/2023]
Abstract
Nanophotonics, manipulating light-matter interactions at the nanoscale, is an appealing technology for diversified biochemical and physical sensing applications. Guided-wave nanophotonics paves the way to miniaturize the sensors and realize on-chip integration of various photonic components, so as to realize chip-scale sensing systems for the future realization of the Internet of Things which requires the deployment of numerous sensor nodes. Starting from the popular CMOS-compatible silicon nanophotonics in the infrared, many infrared guided-wave nanophotonic sensors have been developed, showing the advantages of high sensitivity, low limit of detection, low crosstalk, strong detection multiplexing capability, immunity to electromagnetic interference, small footprint and low cost. In this review, we provide an overview of the recent progress of research on infrared guided-wave nanophotonic sensors. The sensor configurations, sensing mechanisms, sensing performances, performance improvement strategies, and system integrations are described. Future development directions are also proposed to overcome current technological obstacles toward industrialization.
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Affiliation(s)
- Yiming Ma
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, 117576 Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore, 117608 Singapore
- NUS Suzhou Research Institute (NUSRI), Suzhou Industrial Park, Suzhou, 215123 China
| | - Bowei Dong
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, 117576 Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore, 117608 Singapore
- NUS Graduate School for Integrative Science and Engineering (NGS), National University of Singapore, Singapore, 117456 Singapore
| | - Chengkuo Lee
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, 117576 Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore, 117608 Singapore
- NUS Suzhou Research Institute (NUSRI), Suzhou Industrial Park, Suzhou, 215123 China
- NUS Graduate School for Integrative Science and Engineering (NGS), National University of Singapore, Singapore, 117456 Singapore
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Martínez-Pérez P, García-Rupérez J. Commercial polycarbonate track-etched membranes as substrates for low-cost optical sensors. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2019; 10:677-683. [PMID: 30931209 PMCID: PMC6423561 DOI: 10.3762/bjnano.10.67] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2018] [Accepted: 02/14/2019] [Indexed: 05/21/2023]
Abstract
Porous materials have become one of the best options for the development of optical sensors, since they maximize the interaction between the optical field and the target substances, which boosts the sensitivity. In this work, we propose the use of a readily available mesoporous material for the development of such sensors: commercial polycarbonate track-etched membranes. In order to demonstrate their utility for this purpose, we firstly characterized their optical response in the near-infrared range. This response is an interference fringe pattern, characteristic of a Fabry-Pérot interferometer, which is an optical device typically used for sensing purposes. Afterwards, several refractive index sensing experiments were performed by placing different concentrations of ethanol solution on the polycarbonate track-etched membranes. As a result, a sensitivity value of around 56 nm/RIU was obtained and the reusability of the substrate was demonstrated. These results pave the way for the development of optical porous sensors with such easily available mesoporous material.
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Affiliation(s)
- Paula Martínez-Pérez
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - Jaime García-Rupérez
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
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Sabek J, Díaz-Fernández FJ, Torrijos-Morán L, Díaz-Betancor Z, Maquieira Á, Bañuls MJ, Pinilla-Cienfuegos E, García-Rupérez J. Experimental study of an evanescent-field biosensor based on 1D photonic bandgap structures. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2019; 10:967-974. [PMID: 31165023 PMCID: PMC6541322 DOI: 10.3762/bjnano.10.97] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Accepted: 04/18/2019] [Indexed: 05/03/2023]
Abstract
A photonic bandgap (PBG) biosensor has been developed for the label-free detection of proteins. As the sensing in this type of structures is governed by the interaction between the evanescent field going into the cladding and the target analytes, scanning near-field optical microscopy has been used to characterize the profile of that evanescent field. The study confirms the strong exponential decrease of the signal as it goes into the cladding. This means that biorecognition events must occur as close to the PBG structure surface as possible in order to obtain the maximum sensing response. Within this context, the PBG biosensor has been biofunctionalized with half-antibodies specific to bovine serum albumin (BSA) using a UV-induced immobilization procedure. The use of half-antibodies allows one to reduce the thickness of the biorecognition volume down to ca. 2.5 nm, thus leading to a higher interaction with the evanescent field, as well as a proper orientation of their binding sites towards the target sample. Then, the biofunctionalized PBG biosensor has been used to perform a direct and real-time detection of the target BSA antigen.
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Affiliation(s)
- Jad Sabek
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | | | - Luis Torrijos-Morán
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - Zeneida Díaz-Betancor
- Departamento de Química, Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico IDM, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - Ángel Maquieira
- Departamento de Química, Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico IDM, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - María-José Bañuls
- Departamento de Química, Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico IDM, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - Elena Pinilla-Cienfuegos
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
| | - Jaime García-Rupérez
- Nanophotonics Technology Center, Universitat Politècnica de València, Camino de Vera s/n, 46022 Valencia, Spain
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