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Jiao C, Ye J, Liao J, Li J, Liang J, He S. Measuring the severity of knee osteoarthritis with an aberration-free fast line scanning Raman imaging system. Anal Chim Acta 2025; 1351:343900. [PMID: 40187878 DOI: 10.1016/j.aca.2025.343900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2024] [Revised: 02/02/2025] [Accepted: 03/04/2025] [Indexed: 04/07/2025]
Abstract
Osteoarthritis (OA) is a major cause of disability worldwide, with symptoms like joint pain, limited functionality, and decreased quality of life, potentially leading to deformity and irreversible damage. Chemical changes in joint tissues precede imaging alterations, making early diagnosis challenging for conventional methods like X-rays. Although Raman imaging provides detailed chemical information, it is time-consuming. This paper aims to achieve rapid osteoarthritis diagnosis and grading using a self-developed Raman imaging system combined with deep learning denoising and acceleration algorithms. Our self-developed aberration-corrected line-scanning confocal Raman imaging device acquires a line of Raman spectra (hundreds of points) per scan using a galvanometer or displacement stage, achieving spatial and spectral resolutions of 2 μm and 0.2 nm, respectively. Deep learning algorithms enhance the imaging speed by over 4 times through effective spectrum denoising and signal-to-noise ratio (SNR) improvement. By leveraging the denoising capabilities of deep learning, we are able to acquire high-quality Raman spectral data with a reduced integration time, thereby accelerating the imaging process. Experiments on the tibial plateau of osteoarthritis patients compared three excitation wavelengths (532, 671, and 785 nm), with 671 nm chosen for optimal SNR and minimal fluorescence. Machine learning algorithms achieved a 98 % accuracy in distinguishing articular from calcified cartilage and a 97 % accuracy in differentiating osteoarthritis grades I to IV. Our fast Raman imaging system, combining an aberration-corrected line-scanning confocal Raman imager with deep learning denoising, offers improved imaging speed and enhanced spectral and spatial resolutions. It enables rapid, label-free detection of osteoarthritis severity and can identify early compositional changes before clinical imaging, allowing precise grading and tailored treatment, thus advancing orthopedic diagnostics and improving patient outcomes.
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Affiliation(s)
- Changwei Jiao
- Centre for Optical and Electromagnetic Research, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310058, China; Zhejiang Engineering Research Center for Intelligent Medical Imaging, Sensing and Non-invasive Rapid Testing, Taizhou Hospital, Zhejiang University, Taizhou, China
| | - Jiajing Ye
- Zhejiang Engineering Research Center for Intelligent Medical Imaging, Sensing and Non-invasive Rapid Testing, Taizhou Hospital, Zhejiang University, Taizhou, China
| | - Jiaqi Liao
- Centre for Optical and Electromagnetic Research, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310058, China
| | - Jialun Li
- Centre for Optical and Electromagnetic Research, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310058, China
| | - Junbo Liang
- Zhejiang Engineering Research Center for Intelligent Medical Imaging, Sensing and Non-invasive Rapid Testing, Taizhou Hospital, Zhejiang University, Taizhou, China.
| | - Sailing He
- Zhejiang Engineering Research Center for Intelligent Medical Imaging, Sensing and Non-invasive Rapid Testing, Taizhou Hospital, Zhejiang University, Taizhou, China; National Engineering Research Center for Optical Instruments, Zhejiang University, Hangzhou, 310058, China; Department of Electromagnetic Engineering, School of Electrical Engineering, Royal Institute of Technology, 100 44 Stockholm, Sweden.
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Williams AA, Asay JL, Asare D, Desai AD, Gold GE, Hargreaves BA, Chaudhari AS, Chu CR. Reproducibility of Quantitative Double-Echo Steady-State T 2 Mapping of Knee Cartilage. J Magn Reson Imaging 2025; 61:784-795. [PMID: 38703134 PMCID: PMC11532423 DOI: 10.1002/jmri.29431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 04/18/2024] [Accepted: 04/19/2024] [Indexed: 05/06/2024] Open
Abstract
BACKGROUND Cartilage T2 can detect joints at risk of developing osteoarthritis. The quantitative double-echo steady state (qDESS) sequence is attractive for knee cartilage T2 mapping because of its acquisition time of under 5 minutes. Understanding the reproducibility errors associated with qDESS T2 is essential to profiling the technical performance of this biomarker. PURPOSE To examine the combined acquisition and segmentation reproducibility of knee cartilage qDESS T2 using two different regional analysis schemes: 1) manual segmentation of subregions loaded during common activities and 2) automatic subregional segmentation. STUDY TYPE Prospective. SUBJECTS 11 uninjured participants (age: 28 ± 3 years; 8 (73%) female). FIELD STRENGTH/SEQUENCE 3-T, qDESS. ASSESSMENT Test-retest T2 maps were acquired twice on the same day and with a 1-week interval between scans. For each acquisition, average cartilage T2 was calculated in four manually segmented regions encompassing tibiofemoral contact areas during common activities and 12 automatically segmented regions from the deep-learning open-source framework for musculoskeletal MRI analysis (DOSMA) encompassing medial and lateral anterior, central, and posterior tibiofemoral regions. Test-retest T2 values from matching regions were used to evaluate reproducibility. STATISTICAL TESTS Coefficients of variation (%CV), root-mean-square-average-CV (%RMSA-CV), and intraclass correlation coefficients (ICCs) assessed test-retest T2 reproducibility. The median of test-retest standard deviations was used for T2 precision. Bland-Altman (BA) analyses examined test-retest biases. The smallest detectable difference (SDD) was defined as the BA limit of agreement of largest magnitude. Significance was accepted for P < 0.05. RESULTS All cartilage regions across both segmentation schemes demonstrated intraday and interday qDESS T2 CVs and RMSA-CVs of ≤5%. T2 ICC values >0.75 were observed in the majority of regions but were more variable in interday tibial comparisons. Test-retest T2 precision was <1.3 msec. The T2 SDD was 3.8 msec. DATA CONCLUSION Excellent CV and RMSA-CV reproducibility may suggest that qDESS T2 increases or decreases >5% (3.8 msec) could represent changes to cartilage composition. LEVEL OF EVIDENCE: 2 TECHNICAL EFFICACY Stage 2.
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Affiliation(s)
- Ashley A. Williams
- Department of Orthopaedic Surgery, Stanford University, Stanford, CA
- VA Palo Alto Health Care System, Palo Alto, CA
| | | | | | - Arjun D. Desai
- Department of Radiology, Stanford University, Stanford, CA
- Department of Electrical Engineering, Stanford University, Stanford, CA
| | - Garry E. Gold
- Department of Radiology, Stanford University, Stanford, CA
- Department of Bioengineering, Stanford University, Stanford, CA
| | - Brian A. Hargreaves
- Department of Radiology, Stanford University, Stanford, CA
- Department of Electrical Engineering, Stanford University, Stanford, CA
- Department of Bioengineering, Stanford University, Stanford, CA
| | - Akshay S. Chaudhari
- Department of Radiology, Stanford University, Stanford, CA
- Department of Biomedical Data Science, Stanford University, Stanford, CA
| | - Constance R. Chu
- Department of Orthopaedic Surgery, Stanford University, Stanford, CA
- VA Palo Alto Health Care System, Palo Alto, CA
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Herrera D, Almhdie-Imjabbar A, Toumi H, Lespessailles E. Magnetic resonance imaging-based biomarkers for knee osteoarthritis outcomes: A narrative review of prediction but not association studies. Eur J Radiol 2024; 181:111731. [PMID: 39276401 DOI: 10.1016/j.ejrad.2024.111731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 08/13/2024] [Accepted: 09/05/2024] [Indexed: 09/17/2024]
Abstract
BACKGROUND Magnetic Resonance Imaging (MRI) is frequently used in recent studies on knee osteoarthritis (KOA), focusing on developing innovative MRI-based biomarkers to predict KOA outcomes. The growing volume of publications devoted to this subject highlights the need for an up-to-date review. METHODS In this narrative review, we utilized the PubMed database to identify studies examining MRI-based biomarkers for the prediction of knee osteoarthritis (KOA), focusing on those reporting relevant prediction, not association, metrics. The identified articles were subsequently categorized into three distinct outcomes: Prediction of KOA incidence (KOAi), KOA progression (KOAp) and total knee arthroplasty risk (TKAr). Within each category, results were organized by the nature of biomarker(s) used, as either quantitative, semi-quantitative or compound. RESULTS Due to the lack of predictive metrics such as the area under the ROC curve (AUC) scores, sensitivity or specificity, 27 studies were excluded. A final set of 23 studies were deemed eligible for our analysis. The mean AUC scores reported ranged from 0.67 to 0.83 for predicting KOAi, 0.54 to 0.84 for KOAp and 0.55 to 0.94 for TKAr. Excellent predictive performance (AUC>0.8) was observed for the prediction of radiographic KOAi, KOAp and TKAr when using cartilage and meniscal-based measures, osteophyte scores and infrapatellar fat pad texture, and bone marrow lesions, respectively. CONCLUSION The results showed that numerous studies highlighted the importance of MRI-based biomarkers as promising predictors of the three key outcomes. In addition, this narrative review also emphasized the necessity for KOA prediction studies to include adequate reporting of predictive metrics.
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Affiliation(s)
- Daniela Herrera
- Translational Medicine Research Platform, PRIMMO, University Hospital Centre of Orleans, 45100 Orleans, France
| | - Ahmad Almhdie-Imjabbar
- Translational Medicine Research Platform, PRIMMO, University Hospital Centre of Orleans, 45100 Orleans, France
| | - Hechmi Toumi
- Translational Medicine Research Platform, PRIMMO, University Hospital Centre of Orleans, 45100 Orleans, France; Department of Rheumatology, University Hospital Centre of Orleans, 45100 Orleans, France
| | - Eric Lespessailles
- Translational Medicine Research Platform, PRIMMO, University Hospital Centre of Orleans, 45100 Orleans, France; Department of Rheumatology, University Hospital Centre of Orleans, 45100 Orleans, France.
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Kust SJ, Meadows KD, Voinier D, Hong JA, Elliott DM, White DK, Moore AC. Walking recovers cartilage compressive strain in vivo. OSTEOARTHRITIS AND CARTILAGE OPEN 2024; 6:100526. [PMID: 39524477 PMCID: PMC11550359 DOI: 10.1016/j.ocarto.2024.100526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Accepted: 10/01/2024] [Indexed: 11/16/2024] Open
Abstract
Background Articular cartilage is a fiber reinforced hydrated solid that serves a largely mechanical role of supporting load and enabling low friction joint articulation. Daily activities that load cartilage, lead to fluid exudation and compressive axial strain. To date, the only mechanism shown to recover this cartilage strain in vivo is unloading (e.g., lying supine). Based on recent work in cartilage explants, we hypothesized that loaded joint activity (walking) would also be capable of strain recovery in cartilage. Methods Eight asymptomatic young adults performed a fixed series of tasks, each of which was followed by magnetic resonance imaging to track changes in their knee cartilage thickness. The order of tasks was as follows: 1) stand for 30 min, 2) walk for 10 min, 3) stand for 30 min, and 4) lie supine for 50 min. The change in cartilage thickness was used to compute the axial cartilage strain. Results Standing produced an average axial strain of -5.1 % (compressive) in the tibiofemoral knee cartilage, while lying supine led to strain recovery. In agreement with our hypothesis, walking also led to cartilage strain recovery. Interestingly, the recovery rate during walking (0.19 % strain/min) was nearly 3-fold faster than lying supine (0.07 % strain/min). Conclusions This study represents the first in vivo demonstration that joint activity is capable of recovering compressive strain in cartilage. These findings indicate that joint activities such as walking may play a key role in maintaining and recovering cartilage strain, with implications for maintaining cartilage health and preventing or delaying cartilage degeneration.
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Affiliation(s)
- Shu-Jin Kust
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
| | - Kyle D. Meadows
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
| | - Dana Voinier
- Department of Physical Therapy, University of Delaware, Newark, DE, USA
| | - JiYeon A. Hong
- Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Dawn M. Elliott
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
| | - Daniel K. White
- Department of Physical Therapy, University of Delaware, Newark, DE, USA
| | - Axel C. Moore
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
- Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA
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Gao S, Peng C, Wang G, Deng C, Zhang Z, Liu X. Cartilage T2 mapping-based radiomics in knee osteoarthritis research: Status, progress and future outlook. Eur J Radiol 2024; 181:111826. [PMID: 39522425 DOI: 10.1016/j.ejrad.2024.111826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 10/09/2024] [Accepted: 11/06/2024] [Indexed: 11/16/2024]
Abstract
Osteoarthritis (OA) affects more than 500 millions people worldwide and places an enormous economic and medical burden on patients and healthcare systems. The knee is the most commonly affected joint. However, there is no effective early diagnostic method for OA. The main pathological feature of OA is cartilage degeneration. Owing to the poor regenerative ability of chondrocytes, early detection of OA and prompt intervention are extremely important. The T2 relaxation time indicates changes in cartilage composition and responds to alterations in the early cartilage matrix. T2 mapping does not require contrast agents or special equipment, so it is widely used. Radiomics analysis methods are used to construct diagnostic or predictive models based on information extracted from clinical images. Owing to the development of artificial intelligence methods, radiomics has made excellent progress in segmentation and model construction. In this review, we summarize the progress of T2 mapping radiomics research methods in terms of T2 map acquisition, image postprocessing, and OA diagnosis or predictive model construction.
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Affiliation(s)
- Shi Gao
- Department of Rehabilitation, Shengjing Hospital of China Medical University, Shenyang, China
| | - Chengbao Peng
- Platform Engineering Research Center, Neusoft Research Institute of Healthcare Technology, Shenyang, Liaoning Province, China
| | - Guan Wang
- Platform Engineering Research Center, Neusoft Research Institute of Healthcare Technology, Shenyang, Liaoning Province, China
| | - Chunbo Deng
- Department of Orthopedics, Central Hospital of Shenyang Medical College, Shenyang, China
| | - Zhan Zhang
- Department of Orthopedics, Shengjing Hospital of China Medical University, Shenyang, China
| | - Xueyong Liu
- Department of Rehabilitation, Shengjing Hospital of China Medical University, Shenyang, China.
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Eckstein F, Walter-Rittel TC, Chaudhari AS, Brisson NM, Maleitzke T, Duda GN, Wisser A, Wirth W, Winkler T. The design of a sample rapid magnetic resonance imaging (MRI) acquisition protocol supporting assessment of multiple articular tissues and pathologies in knee osteoarthritis. OSTEOARTHRITIS AND CARTILAGE OPEN 2024; 6:100505. [PMID: 39183946 PMCID: PMC11342198 DOI: 10.1016/j.ocarto.2024.100505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 07/21/2024] [Indexed: 08/27/2024] Open
Abstract
Objective This expert opinion paper proposes a design for a state-of-the-art magnetic resonance image (MRI) acquisition protocol for knee osteoarthritis clinical trials in early and advanced disease. Semi-quantitative and quantitative imaging endpoints are supported, partly amendable to automated analysis. Several (peri-) articular tissues and pathologies are covered, including synovitis. Method A PubMed literature search was conducted, with focus on the past 5 years. Further, osteoarthritis imaging experts provided input. Specific MRI sequences, orientations, spatial resolutions and parameter settings were identified to align with study goals. We strived for implementation on standard clinical scanner hardware, with a net acquisition time ≤30 min. Results Short- and long-term longitudinal MRIs should be obtained at ≥1.5T, if possible without hardware changes during the study. We suggest a series of gradient- and spin-echo-sequences, supporting MOAKS, quantitative analysis of cartilage morphology and T2, and non-contrast-enhanced depiction of synovitis. These sequences should be properly aligned and positioned using localizer images. One of the sequences may be repeated in each participant (re-test), optimally at baseline and follow-up, to estimate within-study precision. All images should be checked for quality and protocol-adherence as soon as possible after acquisition. Alternative approaches are suggested that expand on the structural endpoints presented. Conclusions We aim to bridge the gap between technical MRI acquisition guides and the wealth of imaging literature, proposing a balance between image acquisition efficiency (time), safety, and technical/methodological diversity. This approach may entertain scientific innovation on tissue structure and composition assessment in clinical trials on disease modification of knee osteoarthritis.
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Affiliation(s)
- Felix Eckstein
- Research Program for Musculoskeletal Imaging, Center for Anatomy & Cell Biology, Paracelsus Medical University, Salzburg, Austria
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation (LBIAR), Paracelsus Medical University, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Thula Cannon Walter-Rittel
- Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Radiology, Berlin, Germany
| | | | - Nicholas M. Brisson
- Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Julius Wolff Institute, Berlin, Germany
- Berlin Movement Diagnostics (BeMoveD), Center for Musculoskeletal Surgery, Charité – Universitätsmedizin Berlin, Berlin, Germany
| | - Tazio Maleitzke
- Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Julius Wolff Institute, Berlin, Germany
- Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Center for Musculoskeletal Surgery, Berlin, Germany
- Trauma Orthopaedic Research Copenhagen Hvidovre (TORCH), Department of Orthopaedic Surgery, Copenhagen University Hospital - Amager and Hvidovre, Hvidovre, Denmark
- Department of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark
| | - Georg N. Duda
- Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Julius Wolff Institute, Berlin, Germany
- Berlin Movement Diagnostics (BeMoveD), Center for Musculoskeletal Surgery, Charité – Universitätsmedizin Berlin, Berlin, Germany
- Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Berlin Institute of Health Center for Regenerative Therapies, Berlin, Germany
| | - Anna Wisser
- Research Program for Musculoskeletal Imaging, Center for Anatomy & Cell Biology, Paracelsus Medical University, Salzburg, Austria
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation (LBIAR), Paracelsus Medical University, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Wolfgang Wirth
- Research Program for Musculoskeletal Imaging, Center for Anatomy & Cell Biology, Paracelsus Medical University, Salzburg, Austria
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation (LBIAR), Paracelsus Medical University, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Tobias Winkler
- Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Julius Wolff Institute, Berlin, Germany
- Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Center for Musculoskeletal Surgery, Berlin, Germany
- Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Berlin Institute of Health Center for Regenerative Therapies, Berlin, Germany
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Luo P, Lu L, Xu R, Jiang L, Li G. Gaining Insight into Updated MR Imaging for Quantitative Assessment of Cartilage Injury in Knee Osteoarthritis. Curr Rheumatol Rep 2024; 26:311-320. [PMID: 38809506 DOI: 10.1007/s11926-024-01152-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/24/2024] [Indexed: 05/30/2024]
Abstract
PURPOSE OF THE REVIEW Knee Osteoarthritis (KOA) entails progressive cartilage degradation, reviewed via MRI for morphology, biochemical composition, and microtissue alterations, discussing clinical advantages, limitations, and research applicability. RECENT FINDINGS Compositional MRI, like T2/T2* mapping, T1rho mapping, gagCEST, dGEMRIC, sodium imaging, diffusion-weighted imaging, and diffusion-tensor imaging, provide insights into cartilage injury in KOA. These methods quantitatively measure collagen, glycosaminoglycans, and water content, revealing important information about biochemical compositional and microstructural alterations. Innovative techniques like hybrid multi-dimensional MRI and diffusion-relaxation correlation spectrum imaging show potential in depicting initial cartilage changes at a sub-voxel level. Integration of automated image analysis tools addressed limitations in manual cartilage segmentation, ensuring robust and reproducible assessments of KOA cartilage. Compositional MRI techniques reveal microstructural changes in cartilage. Multi-dimensional MR imaging assesses biochemical alterations in KOA-afflicted cartilage, aiding early degeneration identification. Integrating artificial intelligence enhances cartilage analysis, optimal diagnostic accuracy for early KOA detection and monitoring.
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Affiliation(s)
- Peng Luo
- Department of Radiology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, 110 Ganhe Rd, Shanghai, 200437, China
| | - Li Lu
- Department of Radiology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, 110 Ganhe Rd, Shanghai, 200437, China
| | - Run Xu
- Department of Radiology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, 110 Ganhe Rd, Shanghai, 200437, China
| | - Lei Jiang
- Department of Radiology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, 110 Ganhe Rd, Shanghai, 200437, China
| | - Guanwu Li
- Department of Radiology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, 110 Ganhe Rd, Shanghai, 200437, China.
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Heckel R, Jacob M, Chaudhari A, Perlman O, Shimron E. Deep learning for accelerated and robust MRI reconstruction. MAGMA (NEW YORK, N.Y.) 2024; 37:335-368. [PMID: 39042206 DOI: 10.1007/s10334-024-01173-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 05/24/2024] [Accepted: 05/28/2024] [Indexed: 07/24/2024]
Abstract
Deep learning (DL) has recently emerged as a pivotal technology for enhancing magnetic resonance imaging (MRI), a critical tool in diagnostic radiology. This review paper provides a comprehensive overview of recent advances in DL for MRI reconstruction, and focuses on various DL approaches and architectures designed to improve image quality, accelerate scans, and address data-related challenges. It explores end-to-end neural networks, pre-trained and generative models, and self-supervised methods, and highlights their contributions to overcoming traditional MRI limitations. It also discusses the role of DL in optimizing acquisition protocols, enhancing robustness against distribution shifts, and tackling biases. Drawing on the extensive literature and practical insights, it outlines current successes, limitations, and future directions for leveraging DL in MRI reconstruction, while emphasizing the potential of DL to significantly impact clinical imaging practices.
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Affiliation(s)
- Reinhard Heckel
- Department of computer engineering, Technical University of Munich, Munich, Germany
| | - Mathews Jacob
- Department of Electrical and Computer Engineering, University of Iowa, Iowa, 52242, IA, USA
| | - Akshay Chaudhari
- Department of Radiology, Stanford University, Stanford, 94305, CA, USA
- Department of Biomedical Data Science, Stanford University, Stanford, 94305, CA, USA
| | - Or Perlman
- Department of Biomedical Engineering, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Efrat Shimron
- Department of Electrical and Computer Engineering, Technion-Israel Institute of Technology, Haifa, 3200004, Israel.
- Department of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, 3200004, Israel.
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Narahashi É, Guimarães JB, Filho AGO, Nico MAC, Silva FD. Measurement of tibial slope using biplanar stereoradiography (EOS®). Skeletal Radiol 2024; 53:1091-1101. [PMID: 38051424 DOI: 10.1007/s00256-023-04528-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 11/20/2023] [Accepted: 11/21/2023] [Indexed: 12/07/2023]
Abstract
OBJECTIVES Posterior tibial slope (PTS) is an important anatomic parameter of the knee related to anteroposterior instability. Biplanar stereoradiography allows for simultaneous low-dose acquisition of anteroposterior and lateral views with 3D capability, enabling separate lateral and medial plateau analyses. We aimed to evaluate the possibility and compare the reproducibility of measuring medial and lateral PTS on EOS® images with two different patient positionings and compare it with CT of the knees as the gold standard. METHODS This is a retrospective study including volunteers who underwent lower limb stereoradiography and knee CT from 01/08/2016 to 07/31/2019. Sixty legs from 30 patients were studied. PTS were measured using stereoradiography and CT by two radiologists. Intraclass correlation was used to calculate intrarater and interrater reproducibilities. Pearson's correlation coefficients were used to calculate the correlation between stereoradiography and CT. We also compared the reproducibility of the stereoradiography of volunteers with 2 different positionings. RESULTS The mean stereoradiography PTS values for right and left knees were as follows: lateral, 12.2° (SD: 4.1) and 10.1° (SD: 3.5); medial,12.2° (SD: 4.4) and 11.6° (SD: 3.9). CT PTS mean values for right and left knee are as follows: lateral, 10.3° (SD:2.5) and 10.6° (SD: 2.8); medial: 8.7° (SD: 3.7) and 10.4° (SD: 3.5). Agreement between CT and EOS for angles between lateral and medial PTS was good (right, 0.874; left, 0.871). Regarding patient positioning on stereoradiography, interrater and intrarater reproducibilities were greater for patients with nonparallel feet (0.738-0.883 and 0.870-0.975). CONCLUSIONS Stereoradiography allows for appropriate delineation of tibial plateaus, especially in patients with nonparallel feet, for the purpose of measuring PTS. The main advantage is lower radiation doses compared to radiography and CT.
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Affiliation(s)
- Érica Narahashi
- Department of Musculoskeletal Radiology, Fleury Medicine and Health, Rua Mato Grosso, 306, 1o andar, Higienópolis, São Paulo, São Paulo, 01239-040, Brazil.
| | - Júlio Brandão Guimarães
- Department of Musculoskeletal Radiology, Fleury Medicine and Health, Rua Mato Grosso, 306, 1o andar, Higienópolis, São Paulo, São Paulo, 01239-040, Brazil
| | - Alípio Gomes Ormond Filho
- Department of Musculoskeletal Radiology, Fleury Medicine and Health, Rua Mato Grosso, 306, 1o andar, Higienópolis, São Paulo, São Paulo, 01239-040, Brazil
| | - Marcelo Astolfi Caetano Nico
- Department of Musculoskeletal Radiology, Fleury Medicine and Health, Rua Mato Grosso, 306, 1o andar, Higienópolis, São Paulo, São Paulo, 01239-040, Brazil
| | - Flávio Duarte Silva
- Department of Musculoskeletal Radiology, Fleury Medicine and Health, Rua Mato Grosso, 306, 1o andar, Higienópolis, São Paulo, São Paulo, 01239-040, Brazil
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Botnari A, Kadar M, Patrascu JM. A Comprehensive Evaluation of Deep Learning Models on Knee MRIs for the Diagnosis and Classification of Meniscal Tears: A Systematic Review and Meta-Analysis. Diagnostics (Basel) 2024; 14:1090. [PMID: 38893617 PMCID: PMC11172202 DOI: 10.3390/diagnostics14111090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/19/2024] [Accepted: 05/21/2024] [Indexed: 06/21/2024] Open
Abstract
OBJECTIVES This study delves into the cutting-edge field of deep learning techniques, particularly deep convolutional neural networks (DCNNs), which have demonstrated unprecedented potential in assisting radiologists and orthopedic surgeons in precisely identifying meniscal tears. This research aims to evaluate the effectiveness of deep learning models in recognizing, localizing, describing, and categorizing meniscal tears in magnetic resonance images (MRIs). MATERIALS AND METHODS This systematic review was rigorously conducted, strictly following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Extensive searches were conducted on MEDLINE (PubMed), Web of Science, Cochrane Library, and Google Scholar. All identified articles underwent a comprehensive risk of bias analysis. Predictive performance values were either extracted or calculated for quantitative analysis, including sensitivity and specificity. The meta-analysis was performed for all prediction models that identified the presence and location of meniscus tears. RESULTS This study's findings underscore that a range of deep learning models exhibit robust performance in detecting and classifying meniscal tears, in one case surpassing the expertise of musculoskeletal radiologists. Most studies in this review concentrated on identifying tears in the medial or lateral meniscus and even precisely locating tears-whether in the anterior or posterior horn-with exceptional accuracy, as demonstrated by AUC values ranging from 0.83 to 0.94. CONCLUSIONS Based on these findings, deep learning models have showcased significant potential in analyzing knee MR images by learning intricate details within images. They offer precise outcomes across diverse tasks, including segmenting specific anatomical structures and identifying pathological regions. Contributions: This study focused exclusively on DL models for identifying and localizing meniscus tears. It presents a meta-analysis that includes eight studies for detecting the presence of a torn meniscus and a meta-analysis of three studies with low heterogeneity that localize and classify the menisci. Another novelty is the analysis of arthroscopic surgery as ground truth. The quality of the studies was assessed against the CLAIM checklist, and the risk of bias was determined using the QUADAS-2 tool.
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Affiliation(s)
- Alexei Botnari
- Department of Orthopedics, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
| | - Manuella Kadar
- Department of Computer Science, Faculty of Informatics and Engineering, “1 Decembrie 1918” University of Alba Iulia, 510009 Alba Iulia, Romania
| | - Jenel Marian Patrascu
- Department of Orthopedics-Traumatology, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania;
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Yang T, Ma H, Lai H, Lu Y, Ni K, Hu X, Zhou Y, Zhou Z, Li W, Fang J, Zhang Y, Chen Z, He D. Nitisinone attenuates cartilage degeneration and subchondral osteoclastogenesis in osteoarthritis and concomitantly inhibits the cGAS/STING/NF-κB pathway. Eur J Pharmacol 2024; 965:176326. [PMID: 38220141 DOI: 10.1016/j.ejphar.2024.176326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 12/20/2023] [Accepted: 01/09/2024] [Indexed: 01/16/2024]
Abstract
Osteoarthritis (OA) is a chronic degenerative joint disease characterized by cartilage degeneration and subchondral bone remodelling. Currently, conservative treatment strategies cannot effectively alleviate the progression of OA. In this study, we used computer network analysis to show that Nitisinone (NTBC) is closely related to extracellular matrix degradation in OA and mainly interferes with the TNF-α signaling pathway. NTBC is an orphan drug used to treat hereditary type I tyrosinemia by altering phenylalanine/tyrosine metabolic flow. In this study, we found that NTBC effectively reduced chondrocyte inflammation and extracellular matrix degradation induced by TNF-α. Mechanistically, NTBC inhibited the cGAS/STING signaling pathway and reduced activation of the STING-dependent NF-κB pathway to alleviate inflammation. In addition, NTBC inhibited osteoclastogenesis and delayed the occurrence of subchondral bone remodelling. In mice with ACLT-induced osteoarthritis, intra-articular injection of NTBC significantly reduced cartilage degradation and subchondral bone remodelling. NTBC showed impressive therapeutic efficacy as a potential pharmaceutical intervention for the treatment of OA.
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Affiliation(s)
- Tao Yang
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Haiwei Ma
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Hehuan Lai
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Yahong Lu
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Kainan Ni
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Xingyu Hu
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Yang Zhou
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Zhiguo Zhou
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Weiqing Li
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Jiawei Fang
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Yejin Zhang
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000
| | - Zhenzhong Chen
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000.
| | - Dengwei He
- The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui Municipal Central Hospital, 289 Kuocang Road, Lishui, Zhejiang, PR China, 323000.
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Pătraşcu JM, Florescu S, Brad S, Andor BC, Ilia I, Stănciugelu ŞI, Cristina RT. Magnetic resonance imaging combined with histological evaluation of repair process using the microfracture technique in an association of osteocartilaginous and meniscal surgically induced lesions of the knee. In vivo experiment on a rabbit model. ROMANIAN JOURNAL OF MORPHOLOGY AND EMBRYOLOGY = REVUE ROUMAINE DE MORPHOLOGIE ET EMBRYOLOGIE 2024; 65:89-97. [PMID: 38527988 PMCID: PMC11146455 DOI: 10.47162/rjme.65.1.11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/18/2024] [Indexed: 03/27/2024]
Abstract
The present research study aimed to assess magnetic resonance imaging (MRI) changes and histological findings in the therapeutic effects of microfractures in the treatment of complex animal knee lesions resulting from osteochondral and meniscal defects resulting from non-total meniscectomies. The anterior cruciate ligament lesions are also proven to facilitate the development of osteoarthritis in the knee and worsen the prognosis. Surgery was performed on the right knee joint of 22 male rabbits in order to partially remove the anterior horn of the internal meniscus and to induce an osteochondral defect at the level of the internal femoral condyle. The induced lesion complex was aimed to simulate a clinical situation that occurs frequently in orthopedic practice when young adults undergo partial meniscectomy and at the time of surgery, an osteochondral defect is diagnosed. Rabbits were separated into two study groups: the control (C1) group and the microfractures (MF2) group. After the induced cartilage defect and partial meniscectomy, both groups were followed-up for six months using detailed MRI. Also, anatomical specimens were histologically analyzed to show modifications and signs of healing process, along with complications, in the study group. The results showed that the microfracture group had better results concerning articular surface defect healing in comparison to the control group. Our results suggest that microfractures do improve results concerning surface contact healing and serial MRI studies can be useful in observing the remodeling process in dynamics.
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Affiliation(s)
- Jenel Marian Pătraşcu
- Department of Orthopedics and Traumatology, Faculty of Medicine, Professor Teodor Şora Research Center, Victor Babeş University of Medicine and Pharmacy, Timişoara, Romania; ,
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13
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Wirth W, Ladel C, Maschek S, Wisser A, Eckstein F, Roemer F. Quantitative measurement of cartilage morphology in osteoarthritis: current knowledge and future directions. Skeletal Radiol 2023; 52:2107-2122. [PMID: 36380243 PMCID: PMC10509082 DOI: 10.1007/s00256-022-04228-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 10/29/2022] [Accepted: 10/31/2022] [Indexed: 11/16/2022]
Abstract
Quantitative measures of cartilage morphology ("cartilage morphometry") extracted from high resolution 3D magnetic resonance imaging (MRI) sequences have been shown to be sensitive to osteoarthritis (OA)-related change and also to treatment interventions. Cartilage morphometry is therefore nowadays widely used as outcome measure for observational studies and randomized interventional clinical trials. The objective of this narrative review is to summarize the current status of cartilage morphometry in OA research, to provide insights into aspects relevant for the design of future studies and clinical trials, and to give an outlook on future developments. It covers the aspects related to the acquisition of MRIs suitable for cartilage morphometry, the analysis techniques needed for deriving quantitative measures from the MRIs, the quality assurance required for providing reliable cartilage measures, and the appropriate participant recruitment criteria for the enrichment of study cohorts with knees likely to show structural progression. Finally, it provides an overview over recent clinical trials that relied on cartilage morphometry as a structural outcome measure for evaluating the efficacy of disease-modifying OA drugs (DMOAD).
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Affiliation(s)
- Wolfgang Wirth
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy & Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020 Salzburg, Austria
- Ludwig Boltzmann Inst. for Arthritis and Rehabilitation, Paracelsus Medical University Salzburg & Nuremberg, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | | | - Susanne Maschek
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy & Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020 Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Anna Wisser
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy & Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020 Salzburg, Austria
- Ludwig Boltzmann Inst. for Arthritis and Rehabilitation, Paracelsus Medical University Salzburg & Nuremberg, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Felix Eckstein
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy & Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020 Salzburg, Austria
- Ludwig Boltzmann Inst. for Arthritis and Rehabilitation, Paracelsus Medical University Salzburg & Nuremberg, Salzburg, Austria
- Chondrometrics GmbH, Freilassing, Germany
| | - Frank Roemer
- Quantitative Imaging Center, Department of Radiology, Boston University School of Medicine, Boston, MA USA
- Department of Radiology, Universitätsklinikum Erlangen and Friedrich-Alexander-University Erlangen-Nürnberg (FAU), Erlangen, Germany
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Link TM, Joseph GB, Li X. MRI-based T 1rho and T 2 cartilage compositional imaging in osteoarthritis: what have we learned and what is needed to apply it clinically and in a trial setting? Skeletal Radiol 2023; 52:2137-2147. [PMID: 37000230 PMCID: PMC11409322 DOI: 10.1007/s00256-023-04310-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 02/20/2023] [Accepted: 02/21/2023] [Indexed: 04/01/2023]
Abstract
Cartilage MRI-based T1rho and T2 compositional measurements have been developed to characterize cartilage matrix quality and diagnose cartilage damage before irreversible defects are found, allowing intervention at an early, potentially reversible disease stage. Over the last 2 decades, this technology was investigated in numerous studies and was validated using specimen studies and arthroscopy; and longitudinal studies documented its ability to predict progression of degenerative disease and radiographic osteoarthritis (OA). While T1rho and T2 measurements have shown promise in early disease stages, several hurdles have been encountered to apply this technology clinically. These include (i) challenges with cartilage segmentation, (ii) long image acquisition times, (iii) a lack of standardization of imaging, and (iv) an absence of reference databases and definitions of abnormal cut-off values. Progress has been made by developing deep-learning based automatic cartilage segmentation and faster imaging methods, enabling the feasibility of T1rho and T2 imaging for clinical and scientific trial applications. Also, the Radiological Society of North America (RSNA) Quantitative Imaging Biomarker Alliance mechanism was used to establish standardized profiles for compositional T1rho and T2 imaging, and multi-center feasibility testing is work in progress. The last hurdles are the development of reference databases and establishing a definition of normal versus abnormal cartilage T1rho and T2 values. Finally, effective treatments for prevention and slowing progression of OA are required in order to establish T1rho and T2 as imaging biomarkers for initiating and monitoring therapies, analogous to the role of dual X-ray absorptiometry (DXA) bone mineral density measurements in the management of osteoporosis. KEY POINTS: • T1rho and T2 cartilage measurements have been validated in characterizing cartilage degenerative change using histology and arthroscopy as a reference. • They have also been shown to predict progression of cartilage degeneration and incidence of radiographic OA. • Advances have been made to facilitate clinical and trial application of T1rho and T2 by improved standardization of imaging and by establishing deep learning-based automatic cartilage segmentation. • Effective treatments with disease-modifying OA specific drugs may establish T1rho and T2 cartilage compositional measurements as biomarkers to initiate and monitor treatment.
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Affiliation(s)
- Thomas M Link
- Department of Radiology and Biomedical Imaging, University of California, 400 Parnassus Ave, A-367, San Francisco, CA, 94143, USA.
| | - Gabby B Joseph
- Department of Radiology and Biomedical Imaging, University of California, 400 Parnassus Ave, A-367, San Francisco, CA, 94143, USA
| | - Xiaojuan Li
- Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA
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Zibetti MVW, Menon RG, de Moura HL, Zhang X, Kijowski R, Regatte RR. Updates on Compositional MRI Mapping of the Cartilage: Emerging Techniques and Applications. J Magn Reson Imaging 2023; 58:44-60. [PMID: 37010113 PMCID: PMC10323700 DOI: 10.1002/jmri.28689] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 03/06/2023] [Accepted: 03/06/2023] [Indexed: 04/04/2023] Open
Abstract
Osteoarthritis (OA) is a widely occurring degenerative joint disease that is severely debilitating and causes significant socioeconomic burdens to society. Magnetic resonance imaging (MRI) is the preferred imaging modality for the morphological evaluation of cartilage due to its excellent soft tissue contrast and high spatial resolution. However, its utilization typically involves subjective qualitative assessment of cartilage. Compositional MRI, which refers to the quantitative characterization of cartilage using a variety of MRI methods, can provide important information regarding underlying compositional and ultrastructural changes that occur during early OA. Cartilage compositional MRI could serve as early imaging biomarkers for the objective evaluation of cartilage and help drive diagnostics, disease characterization, and response to novel therapies. This review will summarize current and ongoing state-of-the-art cartilage compositional MRI techniques and highlight emerging methods for cartilage compositional MRI including MR fingerprinting, compressed sensing, multiexponential relaxometry, improved and robust radio-frequency pulse sequences, and deep learning-based acquisition, reconstruction, and segmentation. The review will also briefly discuss the current challenges and future directions for adopting these emerging cartilage compositional MRI techniques for use in clinical practice and translational OA research studies. EVIDENCE LEVEL: 2 TECHNICAL EFFICACY: Stage 2.
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Affiliation(s)
- Marcelo V. W. Zibetti
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Rajiv G. Menon
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Hector L. de Moura
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Xiaoxia Zhang
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Richard Kijowski
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Ravinder R. Regatte
- Center of Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
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Wu J, Xia Y, Wang X, Wei Y, Liu A, Innanje A, Zheng M, Chen L, Shi J, Wang L, Zhan Y, Zhou XS, Xue Z, Shi F, Shen D. uRP: An integrated research platform for one-stop analysis of medical images. FRONTIERS IN RADIOLOGY 2023; 3:1153784. [PMID: 37492386 PMCID: PMC10365282 DOI: 10.3389/fradi.2023.1153784] [Citation(s) in RCA: 52] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 03/31/2023] [Indexed: 07/27/2023]
Abstract
Introduction Medical image analysis is of tremendous importance in serving clinical diagnosis, treatment planning, as well as prognosis assessment. However, the image analysis process usually involves multiple modality-specific software and relies on rigorous manual operations, which is time-consuming and potentially low reproducible. Methods We present an integrated platform - uAI Research Portal (uRP), to achieve one-stop analyses of multimodal images such as CT, MRI, and PET for clinical research applications. The proposed uRP adopts a modularized architecture to be multifunctional, extensible, and customizable. Results and Discussion The uRP shows 3 advantages, as it 1) spans a wealth of algorithms for image processing including semi-automatic delineation, automatic segmentation, registration, classification, quantitative analysis, and image visualization, to realize a one-stop analytic pipeline, 2) integrates a variety of functional modules, which can be directly applied, combined, or customized for specific application domains, such as brain, pneumonia, and knee joint analyses, 3) enables full-stack analysis of one disease, including diagnosis, treatment planning, and prognosis assessment, as well as full-spectrum coverage for multiple disease applications. With the continuous development and inclusion of advanced algorithms, we expect this platform to largely simplify the clinical scientific research process and promote more and better discoveries.
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Affiliation(s)
- Jiaojiao Wu
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Yuwei Xia
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Xuechun Wang
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Ying Wei
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Aie Liu
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Arun Innanje
- Department of Research and Development, United Imaging Intelligence Co., Ltd., Cambridge, MA, United States
| | - Meng Zheng
- Department of Research and Development, United Imaging Intelligence Co., Ltd., Cambridge, MA, United States
| | - Lei Chen
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Jing Shi
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Liye Wang
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Yiqiang Zhan
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Xiang Sean Zhou
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Zhong Xue
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Feng Shi
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Dinggang Shen
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
- School of Biomedical Engineering, ShanghaiTech University, Shanghai, China
- Shanghai Clinical Research and Trial Center, Shanghai, China
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Schmidt AM, Desai AD, Watkins LE, Crowder HA, Black MS, Mazzoli V, Rubin EB, Lu Q, MacKay JW, Boutin RD, Kogan F, Gold GE, Hargreaves BA, Chaudhari AS. Generalizability of Deep Learning Segmentation Algorithms for Automated Assessment of Cartilage Morphology and MRI Relaxometry. J Magn Reson Imaging 2023; 57:1029-1039. [PMID: 35852498 PMCID: PMC9849481 DOI: 10.1002/jmri.28365] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 07/06/2022] [Accepted: 07/07/2022] [Indexed: 01/21/2023] Open
Abstract
BACKGROUND Deep learning (DL)-based automatic segmentation models can expedite manual segmentation yet require resource-intensive fine-tuning before deployment on new datasets. The generalizability of DL methods to new datasets without fine-tuning is not well characterized. PURPOSE Evaluate the generalizability of DL-based models by deploying pretrained models on independent datasets varying by MR scanner, acquisition parameters, and subject population. STUDY TYPE Retrospective based on prospectively acquired data. POPULATION Overall test dataset: 59 subjects (26 females); Study 1: 5 healthy subjects (zero females), Study 2: 8 healthy subjects (eight females), Study 3: 10 subjects with osteoarthritis (eight females), Study 4: 36 subjects with various knee pathology (10 females). FIELD STRENGTH/SEQUENCE A 3-T, quantitative double-echo steady state (qDESS). ASSESSMENT Four annotators manually segmented knee cartilage. Each reader segmented one of four qDESS datasets in the test dataset. Two DL models, one trained on qDESS data and another on Osteoarthritis Initiative (OAI)-DESS data, were assessed. Manual and automatic segmentations were compared by quantifying variations in segmentation accuracy, volume, and T2 relaxation times for superficial and deep cartilage. STATISTICAL TESTS Dice similarity coefficient (DSC) for segmentation accuracy. Lin's concordance correlation coefficient (CCC), Wilcoxon rank-sum tests, root-mean-squared error-coefficient-of-variation to quantify manual vs. automatic T2 and volume variations. Bland-Altman plots for manual vs. automatic T2 agreement. A P value < 0.05 was considered statistically significant. RESULTS DSCs for the qDESS-trained model, 0.79-0.93, were higher than those for the OAI-DESS-trained model, 0.59-0.79. T2 and volume CCCs for the qDESS-trained model, 0.75-0.98 and 0.47-0.95, were higher than respective CCCs for the OAI-DESS-trained model, 0.35-0.90 and 0.13-0.84. Bland-Altman 95% limits of agreement for superficial and deep cartilage T2 were lower for the qDESS-trained model, ±2.4 msec and ±4.0 msec, than the OAI-DESS-trained model, ±4.4 msec and ±5.2 msec. DATA CONCLUSION The qDESS-trained model may generalize well to independent qDESS datasets regardless of MR scanner, acquisition parameters, and subject population. EVIDENCE LEVEL 1 TECHNICAL EFFICACY: Stage 1.
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Affiliation(s)
- Andrew M Schmidt
- Department of Radiology, Stanford University, Palo Alto, California, USA
| | - Arjun D Desai
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Electrical Engineering, Stanford University, Palo Alto, California, USA
| | - Lauren E Watkins
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Bioengineering, Stanford University, Palo Alto, California, USA
| | - Hollis A Crowder
- Mechanical Engineering, Stanford University, Palo Alto, California, USA
| | - Marianne S Black
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Mechanical Engineering, Stanford University, Palo Alto, California, USA
| | - Valentina Mazzoli
- Department of Radiology, Stanford University, Palo Alto, California, USA
| | - Elka B Rubin
- Department of Radiology, Stanford University, Palo Alto, California, USA
| | - Quin Lu
- Philips Healthcare North America, Gainesville, Florida, USA
| | - James W MacKay
- Department of Radiology, University of Cambridge, Cambridge, UK
- Norwich Medical School, University of East Anglia, Norwich, UK
| | - Robert D Boutin
- Department of Radiology, Stanford University, Palo Alto, California, USA
| | - Feliks Kogan
- Department of Radiology, Stanford University, Palo Alto, California, USA
| | - Garry E Gold
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Bioengineering, Stanford University, Palo Alto, California, USA
| | - Brian A Hargreaves
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Electrical Engineering, Stanford University, Palo Alto, California, USA
- Bioengineering, Stanford University, Palo Alto, California, USA
| | - Akshay S Chaudhari
- Department of Radiology, Stanford University, Palo Alto, California, USA
- Biomedical Data Science, Stanford University, Palo Alto, California, USA
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Jang H, Athertya J, Jerban S, Ma Y, Lombardi AF, Chung CB, Chang EY, Du J. Correction of B 0 and linear eddy currents: Impact on morphological and quantitative ultrashort echo time double echo steady state (UTE-DESS) imaging. NMR IN BIOMEDICINE 2023; 36:e4939. [PMID: 36965076 PMCID: PMC10518369 DOI: 10.1002/nbm.4939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 03/17/2023] [Accepted: 03/20/2023] [Indexed: 05/10/2023]
Abstract
The purpose of the current study was to investigate the effects of B0 and linear eddy currents on ultrashort echo time double echo steady state (UTE-DESS) imaging and to determine whether eddy current correction (ECC) effectively resolves imaging artifacts caused by eddy currents. 3D UTE-DESS sequences based on either projection radial or spiral cones trajectories were implemented on a 3-T clinical MR scanner. An off-isocentered thin-slice excitation approach was used to measure eddy currents. The measurements were repeated four times using two sets of tested gradient waveforms with opposite polarities and two different slice locations to measure B0 and linear eddy currents simultaneously. Computer simulation was performed to investigate the eddy current effect. Finally, a phantom experiment, an ex vivo experiment with human synovium and ankle samples, and an in vivo experiment with human knee joints, were performed to demonstrate the effects of eddy currents and ECC in UTE-DESS imaging. In a computer simulation, the two echoes (S+ and S-) in UTE-DESS imaging exhibited strong distortion at different orientations in the presence of B0 and linear eddy currents, resulting in both image degradation as well as misalignment of pixel location between the two echoes. The same phenomenon was observed in the phantom, ex vivo, and in vivo experiments, where the presence of eddy currents degraded S+, S-, echo subtraction images, and T2 maps. The implementation of ECC dramatically improved both the image quality and image registration between the S+ and S- echoes. It was concluded that ECC is crucial for reliable morphological and quantitative UTE-DESS imaging.
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Affiliation(s)
- Hyungseok Jang
- Department of Radiology, University of California, San Diego, USA
| | - Jiyo Athertya
- Department of Radiology, University of California, San Diego, USA
| | - Saeed Jerban
- Department of Radiology, University of California, San Diego, USA
| | - Yajun Ma
- Department of Radiology, University of California, San Diego, USA
| | | | - Christine B Chung
- Department of Radiology, University of California, San Diego, USA
- Radiology Service, Veterans Affairs San Diego Healthcare System, San Diego, USA
| | - Eric Y Chang
- Department of Radiology, University of California, San Diego, USA
- Radiology Service, Veterans Affairs San Diego Healthcare System, San Diego, USA
| | - Jiang Du
- Department of Radiology, University of California, San Diego, USA
- Radiology Service, Veterans Affairs San Diego Healthcare System, San Diego, USA
- Department of Bioengineering, University of California, San Diego, USA
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Dam EB, Desai AD, Deniz CM, Rajamohan HR, Regatte R, Iriondo C, Pedoia V, Majumdar S, Perslev M, Igel C, Pai A, Gaj S, Yang M, Nakamura K, Li X, Maqbool H, Irmakci I, Song SE, Bagci U, Hargreaves B, Gold G, Chaudhari A. Towards Automatic Cartilage Quantification in Clinical Trials - Continuing from the 2019 IWOAI Knee Segmentation Challenge. OSTEOARTHRITIS IMAGING 2023; 3:100087. [PMID: 39036792 PMCID: PMC11258861 DOI: 10.1016/j.ostima.2023.100087] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/23/2024]
Abstract
Objective To evaluate whether the deep learning (DL) segmentation methods from the six teams that participated in the IWOAI 2019 Knee Cartilage Segmentation Challenge are appropriate for quantifying cartilage loss in longitudinal clinical trials. Design We included 556 subjects from the Osteoarthritis Initiative study with manually read cartilage volume scores for the baseline and 1-year visits. The teams used their methods originally trained for the IWOAI 2019 challenge to segment the 1130 knee MRIs. These scans were anonymized and the teams were blinded to any subject or visit identifiers. Two teams also submitted updated methods. The resulting 9,040 segmentations are available online.The segmentations included tibial, femoral, and patellar compartments. In post-processing, we extracted medial and lateral tibial compartments and geometrically defined central medial and lateral femoral sub-compartments. The primary study outcome was the sensitivity to measure cartilage loss as defined by the standardized response mean (SRM). Results For the tibial compartments, several of the DL segmentation methods had SRMs similar to the gold standard manual method. The highest DL SRM was for the lateral tibial compartment at 0.38 (the gold standard had 0.34). For the femoral compartments, the gold standard had higher SRMs than the automatic methods at 0.31/0.30 for medial/lateral compartments. Conclusion The lower SRMs for the DL methods in the femoral compartments at 0.2 were possibly due to the simple sub-compartment extraction done during post-processing. The study demonstrated that state-of-the-art DL segmentation methods may be used in standardized longitudinal single-scanner clinical trials for well-defined cartilage compartments.
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Affiliation(s)
- Erik B Dam
- University of Copenhagen, Copenhagen, Denmark
| | | | - Cem M Deniz
- New York University, Langone Health, New York, NY USA
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Ulas Bagci
- Northwestern University, Evanston, IL USA
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20
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Arnold KM, Sicard D, Tschumperlin DJ, Westendorf JJ. Atomic Force Microscopy Micro-Indentation Methods for Determining the Elastic Modulus of Murine Articular Cartilage. SENSORS (BASEL, SWITZERLAND) 2023; 23:1835. [PMID: 36850434 PMCID: PMC9967621 DOI: 10.3390/s23041835] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 01/20/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
The mechanical properties of biological tissues influence their function and can predict degenerative conditions before gross histological or physiological changes are detectable. This is especially true for structural tissues such as articular cartilage, which has a primarily mechanical function that declines after injury and in the early stages of osteoarthritis. While atomic force microscopy (AFM) has been used to test the elastic modulus of articular cartilage before, there is no agreement or consistency in methodologies reported. For murine articular cartilage, methods differ in two major ways: experimental parameter selection and sample preparation. Experimental parameters that affect AFM results include indentation force and cantilever stiffness; these are dependent on the tip, sample, and instrument used. The aim of this project was to optimize these experimental parameters to measure murine articular cartilage elastic modulus by AFM micro-indentation. We first investigated the effects of experimental parameters on a control material, polydimethylsiloxane gel (PDMS), which has an elastic modulus on the same order of magnitude as articular cartilage. Experimental parameters were narrowed on this control material, and then finalized on wildtype C57BL/6J murine articular cartilage samples that were prepared with a novel technique that allows for cryosectioning of epiphyseal segments of articular cartilage and long bones without decalcification. This technique facilitates precise localization of AFM measurements on the murine articular cartilage matrix and eliminates the need to separate cartilage from underlying bone tissues, which can be challenging in murine bones because of their small size. Together, the new sample preparation method and optimized experimental parameters provide a reliable standard operating procedure to measure microscale variations in the elastic modulus of murine articular cartilage.
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Affiliation(s)
- Katherine M. Arnold
- Mayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic, Rochester, MN 55905, USA
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN 55905, USA
- Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN 55905, USA
| | - Delphine Sicard
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN 55905, USA
| | - Daniel J. Tschumperlin
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN 55905, USA
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21
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Dominic J, Bhaskhar N, Desai AD, Schmidt A, Rubin E, Gunel B, Gold GE, Hargreaves BA, Lenchik L, Boutin R, Chaudhari AS. Improving Data-Efficiency and Robustness of Medical Imaging Segmentation Using Inpainting-Based Self-Supervised Learning. Bioengineering (Basel) 2023; 10:207. [PMID: 36829701 PMCID: PMC9951871 DOI: 10.3390/bioengineering10020207] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/16/2023] [Accepted: 01/23/2023] [Indexed: 02/09/2023] Open
Abstract
We systematically evaluate the training methodology and efficacy of two inpainting-based pretext tasks of context prediction and context restoration for medical image segmentation using self-supervised learning (SSL). Multiple versions of self-supervised U-Net models were trained to segment MRI and CT datasets, each using a different combination of design choices and pretext tasks to determine the effect of these design choices on segmentation performance. The optimal design choices were used to train SSL models that were then compared with baseline supervised models for computing clinically-relevant metrics in label-limited scenarios. We observed that SSL pretraining with context restoration using 32 × 32 patches and Poission-disc sampling, transferring only the pretrained encoder weights, and fine-tuning immediately with an initial learning rate of 1 × 10-3 provided the most benefit over supervised learning for MRI and CT tissue segmentation accuracy (p < 0.001). For both datasets and most label-limited scenarios, scaling the size of unlabeled pretraining data resulted in improved segmentation performance. SSL models pretrained with this amount of data outperformed baseline supervised models in the computation of clinically-relevant metrics, especially when the performance of supervised learning was low. Our results demonstrate that SSL pretraining using inpainting-based pretext tasks can help increase the robustness of models in label-limited scenarios and reduce worst-case errors that occur with supervised learning.
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Affiliation(s)
- Jeffrey Dominic
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
| | - Nandita Bhaskhar
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Arjun D. Desai
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Andrew Schmidt
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
| | - Elka Rubin
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
| | - Beliz Gunel
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Garry E. Gold
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
| | - Brian A. Hargreaves
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - Leon Lenchik
- Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27101, USA
| | - Robert Boutin
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
| | - Akshay S. Chaudhari
- Department of Radiology, Stanford University, Stanford, CA 94305, USA
- Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA
- Stanford Cardiovascular Institute, Stanford University, Stanford, CA 94305, USA
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22
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Oeding JF, Williams RJ, Nwachukwu BU, Martin RK, Kelly BT, Karlsson J, Camp CL, Pearle AD, Ranawat AS, Pareek A. A practical guide to the development and deployment of deep learning models for the Orthopedic surgeon: part I. Knee Surg Sports Traumatol Arthrosc 2023; 31:382-389. [PMID: 36427077 DOI: 10.1007/s00167-022-07239-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 11/15/2022] [Indexed: 11/26/2022]
Abstract
Deep learning has a profound impact on daily life. As Orthopedics makes use of this rapid escalation in technology, Orthopedic surgeons will need to take leadership roles on deep learning projects. Moreover, surgeons must possess an understanding of what is necessary to design and implement deep learning-based project pipelines. This review provides a practical guide for the Orthopedic surgeon to understand the steps needed to design, develop, and deploy a deep learning pipeline for clinical applications. A detailed description of the processes involved in defining the problem, building the team, acquiring and curating the data, labeling the data, establishing the ground truth, pre-processing and augmenting the data, and selecting the required hardware is provided. In addition, an overview of unique considerations involved in the training and evaluation of deep learning models is provided. This review strives to provide surgeons with the groundwork needed to identify gaps in the clinical landscape that deep learning models may be able to fill and equips them with the knowledge needed to lead an interdisciplinary team through the process of creating novel deep-learning-based solutions to fill those gaps.
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Affiliation(s)
- Jacob F Oeding
- School of Medicine, Mayo Clinic Alix School of Medicine, Rochester, MN, USA
| | - Riley J Williams
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA
| | - Benedict U Nwachukwu
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA
| | - R Kyle Martin
- Department of Orthopedic Surgery, University of Minnesota, Minneapolis, MN, USA
| | - Bryan T Kelly
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA
| | - Jón Karlsson
- Department of Orthopaedics, Sahlgrenska University Hospital, Sahlgrenska Academy, Gothenburg University, Gothenburg, Sweden
| | - Christopher L Camp
- Department of Orthopedic Surgery and Sports Medicine, Rochester, MN, USA
| | - Andrew D Pearle
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA
| | - Anil S Ranawat
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA
| | - Ayoosh Pareek
- Sports Medicine and Shoulder Service, Hospital for Special Surgery, 535 East 70th Street, New York, NY, 10021, USA.
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23
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Barbieri M, Chaudhari AS, Moran CJ, Gold GE, Hargreaves BA, Kogan F. A method for measuring B 0 field inhomogeneity using quantitative double-echo in steady-state. Magn Reson Med 2023; 89:577-593. [PMID: 36161727 PMCID: PMC9712261 DOI: 10.1002/mrm.29465] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 08/31/2022] [Accepted: 09/01/2022] [Indexed: 12/13/2022]
Abstract
PURPOSE To develop and validate a method forB 0 $$ {B}_0 $$ mapping for knee imaging using the quantitative Double-Echo in Steady-State (qDESS) exploiting the phase difference (Δ θ $$ \Delta \theta $$ ) between the two echoes acquired. Contrary to a two-gradient-echo (2-GRE) method,Δ θ $$ \Delta \theta $$ depends only on the first echo time. METHODS Bloch simulations were applied to investigate robustness to noise of the proposed methodology and all imaging studies were validated with phantoms and in vivo simultaneous bilateral knee acquisitions. Two phantoms and five healthy subjects were scanned using qDESS, water saturation shift referencing (WASSR), and multi-GRE sequences.Δ B 0 $$ \Delta {B}_0 $$ maps were calculated with the qDESS and the 2-GRE methods and compared against those obtained with WASSR. The comparison was quantitatively assessed exploiting pixel-wise difference maps, Bland-Altman (BA) analysis, and Lin's concordance coefficient (ρ c $$ {\rho}_c $$ ). For in vivo subjects, the comparison was assessed in cartilage using average values in six subregions. RESULTS The proposed method for measuringΔ B 0 $$ \Delta {B}_0 $$ inhomogeneities from a qDESS acquisition providedΔ B 0 $$ \Delta {B}_0 $$ maps that were in good agreement with those obtained using WASSR.Δ B 0 $$ \Delta {B}_0 $$ ρ c $$ {\rho}_c $$ values were≥ $$ \ge $$ 0.98 and 0.90 in phantoms and in vivo, respectively. The agreement between qDESS and WASSR was comparable to that of a 2-GRE method. CONCLUSION The proposed method may allow B0 correction for qDESST 2 $$ {T}_2 $$ mapping using an inherently co-registeredΔ B 0 $$ \Delta {B}_0 $$ map without requiring an additional B0 measurement sequence. More generally, the method may help shorten knee imaging protocols that require an auxiliaryΔ B 0 $$ \Delta {B}_0 $$ map by exploiting a qDESS acquisition that also providesT 2 $$ {T}_2 $$ measurements and high-quality morphological imaging.
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Affiliation(s)
- Marco Barbieri
- Department of Radiology, Stanford University, Stanford, CA, U.S.A
| | - Akshay S. Chaudhari
- Department of Radiology, Stanford University, Stanford, CA, U.S.A
- Department of Biomedical Data Science, Stanford University, Stanford, CA, U.S.A
| | | | - Garry E. Gold
- Department of Radiology, Stanford University, Stanford, CA, U.S.A
- Department of Bioengineering, Stanford University, Stanford, CA, U.S.A
| | - Brian A. Hargreaves
- Department of Radiology, Stanford University, Stanford, CA, U.S.A
- Department of Bioengineering, Stanford University, Stanford, CA, U.S.A
- Department of Electrical Engineering, Stanford University, Stanford, CA, U.S.A
| | - Feliks Kogan
- Department of Radiology, Stanford University, Stanford, CA, U.S.A
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24
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Hayashi D, Roemer FW, Link T, Li X, Kogan F, Segal NA, Omoumi P, Guermazi A. Latest advancements in imaging techniques in OA. Ther Adv Musculoskelet Dis 2022; 14:1759720X221146621. [PMID: 36601087 PMCID: PMC9806406 DOI: 10.1177/1759720x221146621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 12/05/2022] [Indexed: 12/28/2022] Open
Abstract
The osteoarthritis (OA) research community has been advocating a shift from radiography-based screening criteria and outcome measures in OA clinical trials to a magnetic resonance imaging (MRI)-based definition of eligibility and endpoint. For conventional morphological MRI, various semiquantitative evaluation tools are available. We have lately witnessed a remarkable technological advance in MRI techniques, including compositional/physiologic imaging and automated quantitative analyses of articular and periarticular structures. More recently, additional technologies were introduced, including positron emission tomography (PET)-MRI, weight-bearing computed tomography (CT), photon-counting spectral CT, shear wave elastography, contrast-enhanced ultrasound, multiscale X-ray phase contrast imaging, and spectroscopic photoacoustic imaging of cartilage. On top of these, we now live in an era in which artificial intelligence is increasingly utilized in medicine. Osteoarthritis imaging is no exception. Successful implementation of artificial intelligence (AI) will hopefully improve the workflow of radiologists, as well as the level of precision and reproducibility in the interpretation of images.
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Affiliation(s)
- Daichi Hayashi
- Department of Radiology, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA
- Department of Radiology, Chobanian & Avedisian School of Medicine, Boston University, Boston, MA, USA
| | - Frank W. Roemer
- Department of Radiology, Chobanian & Avedisian School of Medicine, Boston University, Boston, MA, USA
- Department of Radiology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany
| | - Thomas Link
- Department of Radiology, University of California San Francisco, San Franciso, CA, USA
| | - Xiaojuan Li
- Department of Radiology, Cleveland Clinic Lerner College of Medicine, Cleveland, OH, USA
| | - Feliks Kogan
- Department of Radiology, Stanford University, Stanford, CA, USA
| | - Neil A. Segal
- Department of Rehabilitation Medicine, The University of Kansas, Kansas City, KS, USA
| | - Patrick Omoumi
- Department of Radiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland
| | - Ali Guermazi
- Department of Radiology, Chobanian & Avedisian School of Medicine, Boston University, Boston, MA 02132, USA
- Department of Radiology, VA Boston Healthcare System, U.S. Department of Veterans Affairs, West Roxbury, MA 02132, USA
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25
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Advanced MR Imaging for Knee Osteoarthritis: A Review on Local and Brain Effects. Diagnostics (Basel) 2022; 13:diagnostics13010054. [PMID: 36611346 PMCID: PMC9818324 DOI: 10.3390/diagnostics13010054] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 12/13/2022] [Accepted: 12/20/2022] [Indexed: 12/28/2022] Open
Abstract
Knee osteoarthritis is one of the leading causes of chronic disability worldwide and is a significant social and economic burden on healthcare systems; hence it has become essential to develop methods to identify patients at risk for developing knee osteoarthritis at an early stage. Standard morphological MRI sequences are focused mostly on alterations seen in advanced stages of osteoarthritis. However, they possess low sensitivity for early, subtle, and potentially reversible changes of the degenerative process. In this review, we have summarized the state of the art with regard to innovative quantitative MRI techniques that exploit objective and quantifiable biomarkers to identify subtle alterations that occur in early stages of osteoarthritis in knee cartilage before any morphological alteration occurs and to capture potential effects on the brain. These novel MRI imaging tools are believed to have great potential for improving the current standard of care, but further research is needed to address limitations before these compositional techniques can be robustly applied in research and clinical settings.
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26
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Tolpadi AA, Han M, Calivà F, Pedoia V, Majumdar S. Region of interest-specific loss functions improve T 2 quantification with ultrafast T 2 mapping MRI sequences in knee, hip and lumbar spine. Sci Rep 2022; 12:22208. [PMID: 36564430 PMCID: PMC9789075 DOI: 10.1038/s41598-022-26266-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022] Open
Abstract
MRI T2 mapping sequences quantitatively assess tissue health and depict early degenerative changes in musculoskeletal (MSK) tissues like cartilage and intervertebral discs (IVDs) but require long acquisition times. In MSK imaging, small features in cartilage and IVDs are crucial for diagnoses and must be preserved when reconstructing accelerated data. To these ends, we propose region of interest-specific postprocessing of accelerated acquisitions: a recurrent UNet deep learning architecture that provides T2 maps in knee cartilage, hip cartilage, and lumbar spine IVDs from accelerated T2-prepared snapshot gradient-echo acquisitions, optimizing for cartilage and IVD performance with a multi-component loss function that most heavily penalizes errors in those regions. Quantification errors in knee and hip cartilage were under 10% and 9% from acceleration factors R = 2 through 10, respectively, with bias for both under 3 ms for most of R = 2 through 12. In IVDs, mean quantification errors were under 12% from R = 2 through 6. A Gray Level Co-Occurrence Matrix-based scheme showed knee and hip pipelines outperformed state-of-the-art models, retaining smooth textures for most R and sharper ones through moderate R. Our methodology yields robust T2 maps while offering new approaches for optimizing and evaluating reconstruction algorithms to facilitate better preservation of small, clinically relevant features.
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Affiliation(s)
- Aniket A Tolpadi
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA.
| | - Misung Han
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Francesco Calivà
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Valentina Pedoia
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Sharmila Majumdar
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
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27
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Deep Learning-Based Multimodal 3 T MRI for the Diagnosis of Knee Osteoarthritis. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:7643487. [PMID: 35529263 PMCID: PMC9076302 DOI: 10.1155/2022/7643487] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 04/04/2022] [Indexed: 11/17/2022]
Abstract
The objective of this study was to investigate the application effect of deep learning model combined with different magnetic resonance imaging (MRI) sequences in the evaluation of cartilage injury of knee osteoarthritis (KOA). Specifically, an image superresolution algorithm based on an improved multiscale wide residual network model was proposed and compared with the single-shot multibox detector (SSD) algorithm, superresolution convolutional neural network (SRCNN) algorithm, and enhanced deep superresolution (EDSR) algorithm. Meanwhile, 104 patients with KOA diagnosed with cartilage injury were selected as the research subjects and underwent MRI scans, and the diagnostic performance of different MRI sequences was analyzed using arthroscopic results as the gold standard. It was found that the image reconstructed by the model in this study was clear enough, with minimum noise and artifacts, and the overall quality was better than that processed by other algorithms. Arthroscopic analysis found that grade I and grade II lesions concentrated on patella (26) and femoral trochlear (15). In addition to involving the patella and femoral trochlea, grade III and grade IV lesions gradually developed into the medial and lateral articular cartilage. The 3D-DS-WE sequence was found to be the best sequence for diagnosing KOA injury, with high diagnostic accuracy of over 95% in grade IV lesions. The consistency test showed that the 3D-DESS-WE sequence and T2∗ mapping sequence had a strong consistency with the results of arthroscopy, and the Kappa consistency test values were 0.748 and 0.682, respectively. In conclusion, MRI based on deep learning could clearly show the cartilage lesions of KOA. Of different MRI sequences, 3D-DS-WE sequence and T2∗ mapping sequence showed the best diagnosis results for different degrees of KOA injury.
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Calivà F, Namiri NK, Dubreuil M, Pedoia V, Ozhinsky E, Majumdar S. Studying osteoarthritis with artificial intelligence applied to magnetic resonance imaging. Nat Rev Rheumatol 2022; 18:112-121. [PMID: 34848883 DOI: 10.1038/s41584-021-00719-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/03/2021] [Indexed: 02/08/2023]
Abstract
The 3D nature and soft-tissue contrast of MRI makes it an invaluable tool for osteoarthritis research, by facilitating the elucidation of disease pathogenesis and progression. The recent increasing employment of MRI has certainly been stimulated by major advances that are due to considerable investment in research, particularly related to artificial intelligence (AI). These AI-related advances are revolutionizing the use of MRI in clinical research by augmenting activities ranging from image acquisition to post-processing. Automation is key to reducing the long acquisition times of MRI, conducting large-scale longitudinal studies and quantitatively defining morphometric and other important clinical features of both soft and hard tissues in various anatomical joints. Deep learning methods have been used recently for multiple applications in the musculoskeletal field to improve understanding of osteoarthritis. Compared with labour-intensive human efforts, AI-based methods have advantages and potential in all stages of imaging, as well as post-processing steps, including aiding diagnosis and prognosis. However, AI-based methods also have limitations, including the arguably limited interpretability of AI models. Given that the AI community is highly invested in uncovering uncertainties associated with model predictions and improving their interpretability, we envision future clinical translation and progressive increase in the use of AI algorithms to support clinicians in optimizing patient care.
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Affiliation(s)
- Francesco Calivà
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Nikan K Namiri
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Maureen Dubreuil
- Section of Rheumatology, Department of Medicine, Boston University School of Medicine, Boston, MA, USA
| | - Valentina Pedoia
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Eugene Ozhinsky
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Sharmila Majumdar
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA.
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29
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Thomas KA, Krzemiński D, Kidziński Ł, Paul R, Rubin EB, Halilaj E, Black MS, Chaudhari A, Gold GE, Delp SL. Open Source Software for Automatic Subregional Assessment of Knee Cartilage Degradation Using Quantitative T2 Relaxometry and Deep Learning. Cartilage 2021; 13:747S-756S. [PMID: 34496667 PMCID: PMC8808775 DOI: 10.1177/19476035211042406] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
OBJECTIVE We evaluated a fully automated femoral cartilage segmentation model for measuring T2 relaxation values and longitudinal changes using multi-echo spin-echo (MESE) magnetic resonance imaging (MRI). We open sourced this model and developed a web app available at https://kl.stanford.edu into which users can drag and drop images to segment them automatically. DESIGN We trained a neural network to segment femoral cartilage from MESE MRIs. Cartilage was divided into 12 subregions along medial-lateral, superficial-deep, and anterior-central-posterior boundaries. Subregional T2 values and four-year changes were calculated using a radiologist's segmentations (Reader 1) and the model's segmentations. These were compared using 28 held-out images. A subset of 14 images were also evaluated by a second expert (Reader 2) for comparison. RESULTS Model segmentations agreed with Reader 1 segmentations with a Dice score of 0.85 ± 0.03. The model's estimated T2 values for individual subregions agreed with those of Reader 1 with an average Spearman correlation of 0.89 and average mean absolute error (MAE) of 1.34 ms. The model's estimated four-year change in T2 for individual subregions agreed with Reader 1 with an average correlation of 0.80 and average MAE of 1.72 ms. The model agreed with Reader 1 at least as closely as Reader 2 agreed with Reader 1 in terms of Dice score (0.85 vs. 0.75) and subregional T2 values. CONCLUSIONS Assessments of cartilage health using our fully automated segmentation model agreed with those of an expert as closely as experts agreed with one another. This has the potential to accelerate osteoarthritis research.
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Affiliation(s)
- Kevin A. Thomas
- Department of Biomedical Data Science,
Stanford University, Stanford, CA, USA
| | - Dominik Krzemiński
- Cardiff University Brain Research
Imaging Centre, Cardiff University, Cardiff, Wales, UK
| | - Łukasz Kidziński
- Department of Bioengineering, Stanford
University, Stanford, CA, USA
| | - Rohan Paul
- Department of Biomedical Data Science,
Stanford University, Stanford, CA, USA
| | - Elka B. Rubin
- Department of Radiology, Stanford
University, Stanford, CA, USA
| | - Eni Halilaj
- Department of Mechanical Engineering,
Carnegie Mellon University, Pittsburgh, PA, USA
| | | | - Akshay Chaudhari
- Department of Biomedical Data Science,
Stanford University, Stanford, CA, USA
- Department of Radiology, Stanford
University, Stanford, CA, USA
| | - Garry E. Gold
- Department of Bioengineering, Stanford
University, Stanford, CA, USA
- Department of Radiology, Stanford
University, Stanford, CA, USA
- Department of Orthopaedic Surgery,
Stanford University, Stanford, CA, USA
| | - Scott L. Delp
- Department of Bioengineering, Stanford
University, Stanford, CA, USA
- Department of Orthopaedic Surgery,
Stanford University, Stanford, CA, USA
- Department of Mechanical Engineering,
Stanford University, Stanford, CA, USA
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Yeoh PSQ, Lai KW, Goh SL, Hasikin K, Hum YC, Tee YK, Dhanalakshmi S. Emergence of Deep Learning in Knee Osteoarthritis Diagnosis. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2021; 2021:4931437. [PMID: 34804143 PMCID: PMC8598325 DOI: 10.1155/2021/4931437] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 10/23/2021] [Accepted: 10/25/2021] [Indexed: 12/13/2022]
Abstract
Osteoarthritis (OA), especially knee OA, is the most common form of arthritis, causing significant disability in patients worldwide. Manual diagnosis, segmentation, and annotations of knee joints remain as the popular method to diagnose OA in clinical practices, although they are tedious and greatly subject to user variation. Therefore, to overcome the limitations of the commonly used method as above, numerous deep learning approaches, especially the convolutional neural network (CNN), have been developed to improve the clinical workflow efficiency. Medical imaging processes, especially those that produce 3-dimensional (3D) images such as MRI, possess ability to reveal hidden structures in a volumetric view. Acknowledging that changes in a knee joint is a 3D complexity, 3D CNN has been employed to analyse the joint problem for a more accurate diagnosis in the recent years. In this review, we provide a broad overview on the current 2D and 3D CNN approaches in the OA research field. We reviewed 74 studies related to classification and segmentation of knee osteoarthritis from the Web of Science database and discussed the various state-of-the-art deep learning approaches proposed. We highlighted the potential and possibility of 3D CNN in the knee osteoarthritis field. We concluded by discussing the possible challenges faced as well as the potential advancements in adopting 3D CNNs in this field.
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Affiliation(s)
- Pauline Shan Qing Yeoh
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Khin Wee Lai
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Siew Li Goh
- Sports Medicine Unit, Faculty of Medicine, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Khairunnisa Hasikin
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Yan Chai Hum
- Department of Mechatronics & Biomedical Engineering, Universiti Tunku Abdul Rahman, Sungai Long 43000, Malaysia
| | - Yee Kai Tee
- Department of Mechatronics & Biomedical Engineering, Universiti Tunku Abdul Rahman, Sungai Long 43000, Malaysia
| | - Samiappan Dhanalakshmi
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Kattankulathur, Chengalpattu 603203, India
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Sveinsson B, Chaudhari AS, Zhu B, Koonjoo N, Torriani M, Gold GE, Rosen MS. Synthesizing Quantitative T2 Maps in Right Lateral Knee Femoral Condyles from Multicontrast Anatomic Data with a Conditional Generative Adversarial Network. Radiol Artif Intell 2021; 3:e200122. [PMID: 34617020 PMCID: PMC8489449 DOI: 10.1148/ryai.2021200122] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 04/11/2021] [Accepted: 05/03/2021] [Indexed: 04/09/2023]
Abstract
PURPOSE To develop a proof-of-concept convolutional neural network (CNN) to synthesize T2 maps in right lateral femoral condyle articular cartilage from anatomic MR images by using a conditional generative adversarial network (cGAN). MATERIALS AND METHODS In this retrospective study, anatomic images (from turbo spin-echo and double-echo in steady-state scans) of the right knee of 4621 patients included in the 2004-2006 Osteoarthritis Initiative were used as input to a cGAN-based CNN, and a predicted CNN T2 was generated as output. These patients included men and women of all ethnicities, aged 45-79 years, with or at high risk for knee osteoarthritis incidence or progression who were recruited at four separate centers in the United States. These data were split into 3703 (80%) for training, 462 (10%) for validation, and 456 (10%) for testing. Linear regression analysis was performed between the multiecho spin-echo (MESE) and CNN T2 in the test dataset. A more detailed analysis was performed in 30 randomly selected patients by means of evaluation by two musculoskeletal radiologists and quantification of cartilage subregions. Radiologist assessments were compared by using two-sided t tests. RESULTS The readers were moderately accurate in distinguishing CNN T2 from MESE T2, with one reader having random-chance categorization. CNN T2 values were correlated to the MESE values in the subregions of 30 patients and in the bulk analysis of all patients, with best-fit line slopes between 0.55 and 0.83. CONCLUSION With use of a neural network-based cGAN approach, it is feasible to synthesize T2 maps in femoral cartilage from anatomic MRI sequences, giving good agreement with MESE scans.See also commentary by Yi and Fritz in this issue.Keywords: Cartilage Imaging, Knee, Experimental Investigations, Quantification, Vision, Application Domain, Convolutional Neural Network (CNN), Deep Learning Algorithms, Machine Learning Algorithms© RSNA, 2021.
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Affiliation(s)
- Bragi Sveinsson
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Akshay S. Chaudhari
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Bo Zhu
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Neha Koonjoo
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Martin Torriani
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Garry E. Gold
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
| | - Matthew S. Rosen
- From the Athinoula A. Martinos Center for Biomedical Imaging,
Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
149 13th St, Suite 2301, Boston, MA 02129 (B.S., B.Z., N.K., M.S.R.);
Division of Musculoskeletal Imaging and Intervention, Department of Radiology,
Massachusetts General Hospital, Harvard Medical School, Boston, Mass (M.T.);
Department of Radiology, Stanford University, Stanford, Calif (A.S.C., G.E.G.);
and Department of Physics, Harvard University, Cambridge, Mass (M.S.R.)
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Said O, Schock J, Abrar DB, Schad P, Kuhl C, Nolte T, Knobe M, Prescher A, Truhn D, Nebelung S. In-Situ Cartilage Functionality Assessment Based on Advanced MRI Techniques and Precise Compartmental Knee Joint Loading through Varus and Valgus Stress. Diagnostics (Basel) 2021; 11:diagnostics11081476. [PMID: 34441410 PMCID: PMC8391314 DOI: 10.3390/diagnostics11081476] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 08/09/2021] [Accepted: 08/12/2021] [Indexed: 12/05/2022] Open
Abstract
Stress MRI brings together mechanical loading and MRI in the functional assessment of cartilage and meniscus, yet lacks basic scientific validation. This study assessed the response-to-loading patterns of cartilage and meniscus incurred by standardized compartmental varus and valgus loading of the human knee joint. Eight human cadaveric knee joints underwent imaging by morphologic (i.e., proton density-weighted fat-saturated and 3D water-selective) and quantitative (i.e., T1ρ and T2 mapping) sequences, both unloaded and loaded to 73.5 N, 147.1 N, and 220.6 N of compartmental pressurization. After manual segmentation of cartilage and meniscus, morphometric measures and T2 and T1ρ relaxation times were quantified. CT-based analysis of joint alignment and histologic and biomechanical tissue measures served as references. Under loading, we observed significant decreases in cartilage thickness (p < 0.001 (repeated measures ANOVA)) and T1ρ relaxation times (p = 0.001; medial meniscus, lateral tibia; (Friedman test)), significant increases in T2 relaxation times (p ≤ 0.004; medial femur, lateral tibia; (Friedman test)), and adaptive joint motion. In conclusion, varus and valgus stress MRI induces meaningful changes in cartilage and meniscus secondary to compartmental loading that may be assessed by cartilage morphometric measures as well as T2 and T1ρ mapping as imaging surrogates of tissue functionality.
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Affiliation(s)
- Oliver Said
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
| | - Justus Schock
- Department of Diagnostic and Interventional Radiology, Medical Faculty, University Dusseldorf, 40225 Dusseldorf, Germany;
- Correspondence:
| | - Daniel Benjamin Abrar
- Department of Diagnostic and Interventional Radiology, Medical Faculty, University Dusseldorf, 40225 Dusseldorf, Germany;
| | - Philipp Schad
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
| | - Christiane Kuhl
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
| | - Teresa Nolte
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
| | - Matthias Knobe
- Department of Orthopedic and Trauma Surgery, Lucerne Cantonal Hospital, 6000, Lucerne, Switzerland;
| | - Andreas Prescher
- Institute of Molecular and Cellular Anatomy, RWTH Aachen University, 52074 Aachen, Germany;
| | - Daniel Truhn
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
| | - Sven Nebelung
- Department of Diagnostic and Interventional Radiology, Aachen University Hospital, 52074 Aachen, Germany; (O.S.); (P.S.); (C.K.); (T.N.); (D.T.); (S.N.)
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Chaudhari AS, Sandino CM, Cole EK, Larson DB, Gold GE, Vasanawala SS, Lungren MP, Hargreaves BA, Langlotz CP. Prospective Deployment of Deep Learning in MRI: A Framework for Important Considerations, Challenges, and Recommendations for Best Practices. J Magn Reson Imaging 2021; 54:357-371. [PMID: 32830874 PMCID: PMC8639049 DOI: 10.1002/jmri.27331] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 07/27/2020] [Accepted: 07/31/2020] [Indexed: 12/16/2022] Open
Abstract
Artificial intelligence algorithms based on principles of deep learning (DL) have made a large impact on the acquisition, reconstruction, and interpretation of MRI data. Despite the large number of retrospective studies using DL, there are fewer applications of DL in the clinic on a routine basis. To address this large translational gap, we review the recent publications to determine three major use cases that DL can have in MRI, namely, that of model-free image synthesis, model-based image reconstruction, and image or pixel-level classification. For each of these three areas, we provide a framework for important considerations that consist of appropriate model training paradigms, evaluation of model robustness, downstream clinical utility, opportunities for future advances, as well recommendations for best current practices. We draw inspiration for this framework from advances in computer vision in natural imaging as well as additional healthcare fields. We further emphasize the need for reproducibility of research studies through the sharing of datasets and software. LEVEL OF EVIDENCE: 5 TECHNICAL EFFICACY STAGE: 2.
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Affiliation(s)
| | - Christopher M Sandino
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Elizabeth K Cole
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - David B Larson
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Garry E Gold
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Orthopaedic Surgery, Stanford University, Stanford, California, USA
- Department of Bioengineering, Stanford University, Stanford, California, USA
| | | | - Matthew P Lungren
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Brian A Hargreaves
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
- Department of Biomedical Informatics, Stanford University, Stanford, California, USA
| | - Curtis P Langlotz
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Biomedical Informatics, Stanford University, Stanford, California, USA
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Freitas AC, Gaspar AS, Sousa I, Teixeira RPAG, Hajnal JV, Nunes RG. Improving B 1 + parametric estimation in the brain from multispin-echo sequences using a fusion bootstrap moves solver. Magn Reson Med 2021; 86:2426-2440. [PMID: 34231250 DOI: 10.1002/mrm.28878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 05/08/2021] [Accepted: 05/11/2021] [Indexed: 11/10/2022]
Abstract
PURPOSE To simultaneously estimate the B 1 + field (along with the T2 ) in the brain with multispin-echo (MSE) sequences and dictionary matching. METHODS T2 mapping provides clinically relevant information such as in the assessment of brain degenerative diseases. It is commonly obtained with MSE sequences, and accuracy can be further improved by matching the MSE signal to a precomputed dictionary of echo-modulation curves. For additional T1 quantification, transmit B 1 + field knowledge is also required. Preliminary work has shown that although simultaneous brain B 1 + estimation along with T2 is possible, it presents a bimodal distribution with the main peak coinciding with the true value. By taking advantage of this, the B 1 + maps are expected to be spatially smooth by applying an iterative method that takes into account each pixel neighborhood known as the fusion bootstrap moves solver (FBMS). The effect of the FBMS on B 1 + accuracy and piecewise smoothness is investigated and different spatial regularization levels are compared. Total variation regularization was used for both B 1 + and T2 simultaneous estimation because of its simplicity as an initial proof-of-concept; future work could explore non edge-preserving regularization independently for B 1 + . RESULTS Improvements in B 1 + accuracy (up to 45.37% and 16.81% B 1 + error decrease) and recovery of spatially homogeneous maps are shown in simulations and in vivo 3.0T brain data, respectively. CONCLUSION Accurate B 1 + estimated values can be obtained from widely available MSE sequences while jointly estimating T2 maps with the use of echo-modulation curve matching and FBMS at no further cost.
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Affiliation(s)
- Andreia C Freitas
- Institute for Systems and Robotics (ISR-Lisboa)/LaRSyS and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Andreia S Gaspar
- Institute for Systems and Robotics (ISR-Lisboa)/LaRSyS and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Inês Sousa
- Institute for Systems and Robotics (ISR-Lisboa)/LaRSyS and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Rui P A G Teixeira
- Centre for the Developing Brain, School of Imaging Sciences and Biomedical Engineering, King's College London, London, United Kingdom
| | - Joseph V Hajnal
- Centre for the Developing Brain, School of Imaging Sciences and Biomedical Engineering, King's College London, London, United Kingdom
| | - Rita G Nunes
- Institute for Systems and Robotics (ISR-Lisboa)/LaRSyS and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal.,Centre for the Developing Brain, School of Imaging Sciences and Biomedical Engineering, King's College London, London, United Kingdom
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35
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Chaudhari AS, Grissom MJ, Fang Z, Sveinsson B, Lee JH, Gold GE, Hargreaves BA, Stevens KJ. Diagnostic Accuracy of Quantitative Multicontrast 5-Minute Knee MRI Using Prospective Artificial Intelligence Image Quality Enhancement. AJR Am J Roentgenol 2021; 216:1614-1625. [PMID: 32755384 PMCID: PMC8862596 DOI: 10.2214/ajr.20.24172] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
Abstract
BACKGROUND. Potential approaches for abbreviated knee MRI, including prospective acceleration with deep learning, have achieved limited clinical implementation. OBJECTIVE. The objective of this study was to evaluate the interreader agreement between conventional knee MRI and a 5-minute 3D quantitative double-echo steady-state (qDESS) sequence with automatic T2 mapping and deep learning super-resolutionaugmentation and to compare the diagnostic performance of the two methods regarding findings from arthroscopic surgery. METHODS. Fifty-one patients with knee pain underwent knee MRI that included an additional 3D qDESS sequence with automatic T2 mapping. Fourier interpolation was followed by prospective deep learning super resolution to enhance qDESS slice resolution twofold. A musculoskeletal radiologist and a radiology resident performed independent retrospective evaluations of articular cartilage, menisci, ligaments, bones, extensor mechanism, and synovium using conventional MRI. Following a 2-month washout period, readers reviewed qDESS images alone followed by qDESS with the automatic T2 maps. Interreader agreement between conventional MRI and qDESS was computed using percentage agreement and Cohen kappa. The sensitivity and specificity of conventional MRI, qDESS alone, and qDESS plus T2 mapping were compared with arthroscopic findings using exact McNemar tests. RESULTS. Conventional MRI and qDESS showed 92% agreement in evaluating all tissues. Kappa was 0.79 (95% CI, 0.76-0.81) across all imaging findings. In 43 patients who underwent arthroscopy, sensitivity and specificity were not significantly different (p = .23 to > .99) between conventional MRI (sensitivity, 58-93%; specificity, 27-87%) and qDESS alone (sensitivity, 54-90%; specificity, 23-91%) for cartilage, menisci, ligaments, and synovium. For grade 1 cartilage lesions, sensitivity and specificity were 33% and 56%, respectively, for conventional MRI; 23% and 53% for qDESS (p = .81); and 46% and 39% for qDESS with T2 mapping (p = .80). For grade 2A lesions, values were 27% and 53% for conventional MRI, 26% and 52% for qDESS (p = .02), and 58% and 40% for qDESS with T2 mapping (p < .001). CONCLUSION. The qDESS method prospectively augmented with deep learning showed strong interreader agreement with conventional knee MRI and near-equivalent diagnostic performance regarding arthroscopy. The ability of qDESS to automatically generate T2 maps increases sensitivity for cartilage abnormalities. CLINICAL IMPACT. Using prospective artificial intelligence to enhance qDESS image quality may facilitate an abbreviated knee MRI protocol while generating quantitative T2 maps.
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Affiliation(s)
- Akshay S Chaudhari
- Department of Radiology, Lucas Center for Imaging, Stanford University, 1201 Welch Rd, PS 055B, Stanford, CA 94305
| | | | | | - Bragi Sveinsson
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA
- Department of Radiology, Harvard Medical School, Boston, MA
| | - Jin Hyung Lee
- Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA
- Department of Bioengineering, Stanford University, Stanford, CA
- Department of Neurosurgery, Stanford University, Stanford, CA
- Department of Electrical Engineering, Stanford University, Stanford, CA
| | - Garry E Gold
- Department of Radiology, Lucas Center for Imaging, Stanford University, 1201 Welch Rd, PS 055B, Stanford, CA 94305
- Department of Bioengineering, Stanford University, Stanford, CA
- Department of Orthopaedic Surgery, Stanford University, Redwood City, CA
| | - Brian A Hargreaves
- Department of Radiology, Lucas Center for Imaging, Stanford University, 1201 Welch Rd, PS 055B, Stanford, CA 94305
- Department of Bioengineering, Stanford University, Stanford, CA
- Department of Electrical Engineering, Stanford University, Stanford, CA
| | - Kathryn J Stevens
- Department of Radiology, Lucas Center for Imaging, Stanford University, 1201 Welch Rd, PS 055B, Stanford, CA 94305
- Department of Orthopaedic Surgery, Stanford University, Redwood City, CA
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Davis DL. Editorial Comment on "Diagnostic Accuracy of Quantitative Multicontrast 5-Minute Knee MRI Using Prospective Artificial Intelligence Image Quality Enhancement". AJR Am J Roentgenol 2021; 216:1625. [PMID: 32903055 DOI: 10.2214/ajr.20.24431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Derik L Davis
- University of Maryland School of Medicine, Baltimore, MD,
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37
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Vibrational Spectroscopy in Assessment of Early Osteoarthritis-A Narrative Review. Int J Mol Sci 2021; 22:ijms22105235. [PMID: 34063436 PMCID: PMC8155859 DOI: 10.3390/ijms22105235] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 05/07/2021] [Accepted: 05/13/2021] [Indexed: 12/21/2022] Open
Abstract
Osteoarthritis (OA) is a degenerative disease, and there is currently no effective medicine to cure it. Early prevention and treatment can effectively reduce the pain of OA patients and save costs. Therefore, it is necessary to diagnose OA at an early stage. There are various diagnostic methods for OA, but the methods applied to early diagnosis are limited. Ordinary optical diagnosis is confined to the surface, while laboratory tests, such as rheumatoid factor inspection and physical arthritis checks, are too trivial or time-consuming. Evidently, there is an urgent need to develop a rapid nondestructive detection method for the early diagnosis of OA. Vibrational spectroscopy is a rapid and nondestructive technique that has attracted much attention. In this review, near-infrared (NIR), infrared, (IR) and Raman spectroscopy were introduced to show their potential in early OA diagnosis. The basic principles were discussed first, and then the research progress to date was discussed, as well as its limitations and the direction of development. Finally, all methods were compared, and vibrational spectroscopy was demonstrated that it could be used as a promising tool for early OA diagnosis. This review provides theoretical support for the application and development of vibrational spectroscopy technology in OA diagnosis, providing a new strategy for the nondestructive and rapid diagnosis of arthritis and promoting the development and clinical application of a component-based molecular spectrum detection technology.
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Desai AD, Caliva F, Iriondo C, Mortazi A, Jambawalikar S, Bagci U, Perslev M, Igel C, Dam EB, Gaj S, Yang M, Li X, Deniz CM, Juras V, Regatte R, Gold GE, Hargreaves BA, Pedoia V, Chaudhari AS. The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset. Radiol Artif Intell 2021; 3:e200078. [PMID: 34235438 PMCID: PMC8231759 DOI: 10.1148/ryai.2021200078] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 01/08/2021] [Accepted: 01/25/2021] [Indexed: 02/05/2023]
Abstract
PURPOSE To organize a multi-institute knee MRI segmentation challenge for characterizing the semantic and clinical efficacy of automatic segmentation methods relevant for monitoring osteoarthritis progression. MATERIALS AND METHODS A dataset partition consisting of three-dimensional knee MRI from 88 retrospective patients at two time points (baseline and 1-year follow-up) with ground truth articular (femoral, tibial, and patellar) cartilage and meniscus segmentations was standardized. Challenge submissions and a majority-vote ensemble were evaluated against ground truth segmentations using Dice score, average symmetric surface distance, volumetric overlap error, and coefficient of variation on a holdout test set. Similarities in automated segmentations were measured using pairwise Dice coefficient correlations. Articular cartilage thickness was computed longitudinally and with scans. Correlation between thickness error and segmentation metrics was measured using the Pearson correlation coefficient. Two empirical upper bounds for ensemble performance were computed using combinations of model outputs that consolidated true positives and true negatives. RESULTS Six teams (T 1-T 6) submitted entries for the challenge. No differences were observed across any segmentation metrics for any tissues (P = .99) among the four top-performing networks (T 2, T 3, T 4, T 6). Dice coefficient correlations between network pairs were high (> 0.85). Per-scan thickness errors were negligible among networks T 1-T 4 (P = .99), and longitudinal changes showed minimal bias (< 0.03 mm). Low correlations (ρ < 0.41) were observed between segmentation metrics and thickness error. The majority-vote ensemble was comparable to top-performing networks (P = .99). Empirical upper-bound performances were similar for both combinations (P = .99). CONCLUSION Diverse networks learned to segment the knee similarly, where high segmentation accuracy did not correlate with cartilage thickness accuracy and voting ensembles did not exceed individual network performance.See also the commentary by Elhalawani and Mak in this issue.Keywords: Cartilage, Knee, MR-Imaging, Segmentation © RSNA, 2020Supplemental material is available for this article.
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Affiliation(s)
- Arjun D. Desai
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Francesco Caliva
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Claudia Iriondo
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Aliasghar Mortazi
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Sachin Jambawalikar
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Ulas Bagci
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Mathias Perslev
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Christian Igel
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Erik B. Dam
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Sibaji Gaj
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Mingrui Yang
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Xiaojuan Li
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Cem M. Deniz
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Vladimir Juras
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Ravinder Regatte
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Garry E. Gold
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Brian A. Hargreaves
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Valentina Pedoia
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - Akshay S. Chaudhari
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
| | - on behalf of the IWOAI Segmentation Challenge Writing Group
- From the Departments of Radiology (A.D.D., G.E.G., B.A.H., A.S.C.)
and Electrical Engineering (A.D.D., B.A.H.), Stanford University, Lucas Center
for Imaging, 1201 Welch Rd, PS 055B, Stanford, CA 94305; Department of
Radiology, University of California, San Francisco, San Francisco, Calif (F.C.,
C. Iriondo, V.P.); Berkeley Joint Graduate Group in Bioengineering, University
of California, Berkeley, Berkeley, Calif (C. Iriondo); Department of Computer
Science, University of Central Florida, Orlando, Fla (A.M., U.B.); Department of
Radiology, Northwestern University, Chicago, Ill (U.B.); Department of
Radiology, Columbia University, New York, NY (S.J.); Department of Computer
Science, University of Copenhagen, Copenhagen, Denmark (M.P., C. Igel, E.B.D.);
Department of Biomedical Engineering, Cleveland Clinic, Cleveland, Ohio (S.G.,
M.Y., X.L.); Department of Radiology, New York University Langone Health, New
York, NY (C.M.D., R.R.); and Department of Biomedical Imaging and Image-guided
Therapy, High-Field MR Centre, Medical University of Vienna, Vienna, Austria
(V.J.)
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39
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Jang H, Ma Y, Carl M, Jerban S, Chang EY, Du J. Ultrashort echo time Cones double echo steady state (UTE-Cones-DESS) for rapid morphological imaging of short T 2 tissues. Magn Reson Med 2021; 86:881-892. [PMID: 33755258 DOI: 10.1002/mrm.28769] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 02/17/2021] [Accepted: 02/18/2021] [Indexed: 12/12/2022]
Abstract
PURPOSE In this study, we aimed to develop a new technique, ultrashort echo time Cones double echo steady state (UTE-Cones-DESS), for highly efficient morphological imaging of musculoskeletal tissues with short T2 s. We also proposed a novel, single-point Dixon (spDixon)-based approach for fat suppression. METHODS The UTE-Cones-DESS sequence was implemented on a 3T MR system. It uses a short radiofrequency (RF) pulse followed by a pair of balanced spiral-out and spiral-in readout gradients separated by an unbalanced spoiling gradient in-between. The readout gradients are applied immediately before or after the RF pulses to achieve a UTE image (S+ ) and a spin/stimulated echo image (S- ). Weighted echo subtraction between S+ and S- was performed to achieve high contrast specific to short T2 tissues, and spDixon was applied to suppress fat by using the intrinsic complex signal of S+ and S- . Six healthy volunteers and five patients with osteoarthritis were recruited for whole-knee imaging. Additionally, two healthy volunteers were recruited for lower leg imaging. RESULTS The UTE-Cones-DESS sequence allows fast volumetric imaging of musculoskeletal tissues with excellent image contrast for the osteochondral junction, tendons, menisci, and ligaments in the knee joint as well as cortical bone and aponeurosis in the lower leg within 5 min. spDixon yields efficient fat suppression in both S+ and S- images without requiring any additional acquisitions or preparation pulses. CONCLUSION The rapid UTE-Cones-DESS sequence can be used for high contrast morphological imaging of short T2 tissues, providing a new tool to assess their association with musculoskeletal disorders.
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Affiliation(s)
- Hyungseok Jang
- Department of Radiology, University of California, San Diego, San Diego, CA, USA
| | - Yajun Ma
- Department of Radiology, University of California, San Diego, San Diego, CA, USA
| | | | - Saeed Jerban
- Department of Radiology, University of California, San Diego, San Diego, CA, USA
| | - Eric Y Chang
- Department of Radiology, University of California, San Diego, San Diego, CA, USA.,Radiology Service, Veterans Affairs San Diego Healthcare System, San Diego, CA, USA
| | - Jiang Du
- Department of Radiology, University of California, San Diego, San Diego, CA, USA
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40
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Abstract
Articular cartilage of the knee can be evaluated with high accuracy by magnetic resonance imaging (MRI) in preoperative patients with knee pain, but image quality and reporting are variable. This article discusses the normal MRI appearance of articular cartilage as well as the common MRI abnormalities of knee cartilage that may be considered for operative treatment. This article focuses on a practical approach to preoperative MRI of knee articular cartilage using routine MRI techniques. Current and future directions of knee MRI related to articular cartilage are also discussed.
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Affiliation(s)
| | - Akshay Chaudhari
- Department of Radiology, Stanford University, Stanford, California
| | - Robert D. Boutin
- Department of Radiology, Musculoskeletal Imaging, Stanford University School of Medicine, Stanford, California
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41
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Abstract
Deep learning methods have shown promising results for accelerating quantitative musculoskeletal (MSK) magnetic resonance imaging (MRI) for T2 and T1ρ relaxometry. These methods have been shown to improve musculoskeletal tissue segmentation on parametric maps, allowing efficient and accurate T2 and T1ρ relaxometry analysis for monitoring and predicting MSK diseases. Deep learning methods have shown promising results for disease detection on quantitative MRI with diagnostic performance superior to conventional machine-learning methods for identifying knee osteoarthritis.
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Affiliation(s)
- Fang Liu
- Gordon Center for Medical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA
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42
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Fürst D, Wirth W, Chaudhari A, Eckstein F. Layer-specific analysis of femorotibial cartilage t2 relaxation time based on registration of segmented double echo steady state (dess) to multi-echo-spin-echo (mese) images. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2020; 33:819-828. [PMID: 32458188 DOI: 10.1007/s10334-020-00852-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 04/06/2020] [Accepted: 05/12/2020] [Indexed: 12/18/2022]
Abstract
OBJECTIVE To develop and validate a 3D registration approach by which double echo steady state (DESS) MR images with cartilage thickness segmentations are used to extract the cartilage transverse relaxation time (T2) from multi-echo-spin-echo (MESE) MR images, without direct segmentations for MESE. MATERIALS AND METHODS Manual DESS segmentations of 89 healthy reference knees (healthy) and 60 knees with early radiographic osteoarthritis (early ROA) from the Osteoarthritis Initiative were registered to corresponding MESE images that had independent direct T2 segmentations. For validation purposes, (a) regression analysis of deep and superficial cartilage T2 was performed and (b) between-group differences between healthy vs. early ROA knees were compared for registered vs. direct MESE analysis. RESULTS Moderate to high correlations were observed for the deep (r = 0.80) and the superficial T2 (r = 0.81), with statistically significant between-group differences (ROA vs. healthy) of + 1.4 ms (p = 0.002) vs. + 1.3 ms (p < 0.001) for registered vs. direct T2 segmentation in the deep, and + 1.3 ms (p = 0.002) vs. + 2.3 ms (p < 0.001) in the superficial layer. DISCUSSION This registration approach enables extracting cartilage T2 from MESE scans using DESS (cartilage thickness) segmentations, avoiding the need for direct MESE T2 segmentations.
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Affiliation(s)
- David Fürst
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation, Paracelsus Medical University, Salzburg, Austria.
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy, Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020, Salzburg, Austria.
- Chondrometrics GmbH, Ainring, Germany.
| | - Wolfang Wirth
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation, Paracelsus Medical University, Salzburg, Austria
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy, Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020, Salzburg, Austria
- Chondrometrics GmbH, Ainring, Germany
| | | | - Felix Eckstein
- Ludwig Boltzmann Institute for Arthritis and Rehabilitation, Paracelsus Medical University, Salzburg, Austria
- Department of Imaging & Functional Musculoskeletal Research, Institute of Anatomy, Cell Biology, Paracelsus Medical University Salzburg & Nuremberg, Strubergasse 21, 5020, Salzburg, Austria
- Chondrometrics GmbH, Ainring, Germany
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