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For: Jackrel ME, Valverde R, Regan L. Redesign of a protein-peptide interaction: characterization and applications. Protein Sci 2009;18:762-74. [PMID: 19309728 DOI: 10.1002/pro.75] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Number Cited by Other Article(s)
1
Palacios-Alonso P, Shams MM, Ozel-Okcu S, Sanz-de Diego E, Teran FJ, Delgado-Buscalioni R. Fast and accurate characterization of bioconjugated particles and solvent properties by a general nonlinear analytical relationship for the AC magnetic hysteresis area. NANOSCALE 2025;17:12963-12980. [PMID: 40337790 DOI: 10.1039/d5nr00602c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2025]
2
Sanz-de Diego E, Aires A, Palacios-Alonso P, Cabrera D, Silvestri N, Vequi-Suplicy CC, Artés-Ibáñez EJ, Requejo-Isidro J, Delgado-Buscalioni R, Pellegrino T, Cortajarena AL, Terán FJ. Multiparametric modulation of magnetic transduction for biomolecular sensing in liquids. NANOSCALE 2024;16:4082-4094. [PMID: 38348700 DOI: 10.1039/d3nr06489a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
3
Palacios-Alonso P, Sanz-de-Diego E, Peláez RP, Cortajarena AL, Teran FJ, Delgado-Buscalioni R. Predicting the size and morphology of nanoparticle clusters driven by biomolecular recognition. SOFT MATTER 2023;19:8929-8944. [PMID: 37530392 DOI: 10.1039/d3sm00536d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
4
Madden SK, Itzhaki LS. Exploring the binding of rationally engineered tandem-repeat proteins to E3 ubiquitin ligase Keap1. Protein Eng Des Sel 2021;34:gzab027. [PMID: 34882773 PMCID: PMC8660007 DOI: 10.1093/protein/gzab027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 09/06/2021] [Accepted: 10/04/2021] [Indexed: 11/12/2022]  Open
5
Barik S. Protein Tetratricopeptide Repeat and the Companion Non-tetratricopeptide Repeat Helices: Bioinformatic Analysis of Interhelical Interactions. Bioinform Biol Insights 2019;13:1177932219863363. [PMID: 31579101 PMCID: PMC6759711 DOI: 10.1177/1177932219863363] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 06/22/2019] [Indexed: 12/28/2022]  Open
6
Madden SK, Perez‐Riba A, Itzhaki LS. Exploring new strategies for grafting binding peptides onto protein loops using a consensus-designed tetratricopeptide repeat scaffold. Protein Sci 2019;28:738-745. [PMID: 30746804 PMCID: PMC6423998 DOI: 10.1002/pro.3586] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 01/30/2019] [Accepted: 01/31/2019] [Indexed: 12/27/2022]
7
Harvey JA, Itzhaki LS, Main ERG. Programmed Protein Self-Assembly Driven by Genetically Encoded Intein-Mediated Native Chemical Ligation. ACS Synth Biol 2018;7:1067-1074. [PMID: 29474065 DOI: 10.1021/acssynbio.7b00447] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
8
Lapelosa M. Free Energy of Binding and Mechanism of Interaction for the MEEVD-TPR2A Peptide-Protein Complex. J Chem Theory Comput 2017;13:4514-4523. [PMID: 28723223 DOI: 10.1021/acs.jctc.7b00105] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
9
A designed repeat protein as an affinity capture reagent. Biochem Soc Trans 2016;43:874-80. [PMID: 26517897 DOI: 10.1042/bst20150091] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
10
Hansen S, Tremmel D, Madhurantakam C, Reichen C, Mittl PRE, Plückthun A. Structure and Energetic Contributions of a Designed Modular Peptide-Binding Protein with Picomolar Affinity. J Am Chem Soc 2016;138:3526-32. [DOI: 10.1021/jacs.6b00099] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
11
Assimon VA, Southworth DR, Gestwicki JE. Specific Binding of Tetratricopeptide Repeat Proteins to Heat Shock Protein 70 (Hsp70) and Heat Shock Protein 90 (Hsp90) Is Regulated by Affinity and Phosphorylation. Biochemistry 2015;54:7120-31. [PMID: 26565746 PMCID: PMC4714923 DOI: 10.1021/acs.biochem.5b00801] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Speltz EB, Nathan A, Regan L. Design of Protein-Peptide Interaction Modules for Assembling Supramolecular Structures in Vivo and in Vitro. ACS Chem Biol 2015;10:2108-15. [PMID: 26131725 DOI: 10.1021/acschembio.5b00415] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
13
Wang H, Heilshorn SC. Adaptable hydrogel networks with reversible linkages for tissue engineering. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2015;27:3717-36. [PMID: 25989348 PMCID: PMC4528979 DOI: 10.1002/adma.201501558] [Citation(s) in RCA: 460] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 04/18/2015] [Indexed: 05/19/2023]
14
Parker R, Mercedes-Camacho A, Grove TZ. Consensus design of a NOD receptor leucine rich repeat domain with binding affinity for a muramyl dipeptide, a bacterial cell wall fragment. Protein Sci 2014;23:790-800. [PMID: 24659515 DOI: 10.1002/pro.2461] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Revised: 03/18/2014] [Accepted: 03/20/2014] [Indexed: 12/19/2022]
15
NextGen protein design. Biochem Soc Trans 2014;41:1131-1136. [PMID: 24059497 DOI: 10.1042/bst20130112] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
16
Guellouz A, Valerio-Lepiniec M, Urvoas A, Chevrel A, Graille M, Fourati-Kammoun Z, Desmadril M, van Tilbeurgh H, Minard P. Selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alphaRep). PLoS One 2013;8:e71512. [PMID: 24014183 PMCID: PMC3754942 DOI: 10.1371/journal.pone.0071512] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2013] [Accepted: 07/01/2013] [Indexed: 12/16/2022]  Open
17
Parashar V, Jeffrey PD, Neiditch MB. Conformational change-induced repeat domain expansion regulates Rap phosphatase quorum-sensing signal receptors. PLoS Biol 2013;11:e1001512. [PMID: 23526881 PMCID: PMC3601965 DOI: 10.1371/journal.pbio.1001512] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2012] [Accepted: 02/07/2013] [Indexed: 11/18/2022]  Open
18
Sawyer N, Chen J, Regan L. All repeats are not equal: a module-based approach to guide repeat protein design. J Mol Biol 2013;425:1826-1838. [PMID: 23434848 DOI: 10.1016/j.jmb.2013.02.013] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Revised: 02/11/2013] [Accepted: 02/12/2013] [Indexed: 12/30/2022]
19
Kinetics and thermodynamics of phenotype: unwinding and rewinding the nucleosome. J Mol Biol 2012;423:687-701. [PMID: 22944905 DOI: 10.1016/j.jmb.2012.08.021] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Revised: 08/23/2012] [Accepted: 08/24/2012] [Indexed: 02/01/2023]
20
Morin A, Kaufmann KW, Fortenberry C, Harp JM, Mizoue LS, Meiler J. Computational design of an endo-1,4-beta-xylanase ligand binding site. Protein Eng Des Sel 2011;24:503-16. [PMID: 21349882 DOI: 10.1093/protein/gzr006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Grove TZ, Osuji CO, Forster JD, Dufresne ER, Regan L. Stimuli-responsive smart gels realized via modular protein design. J Am Chem Soc 2011;132:14024-6. [PMID: 20860358 DOI: 10.1021/ja106619w] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
22
Culpepper DJ, Maddox MK, Caldwell AB, McFarland BJ. Systematic mutation and thermodynamic analysis of central tyrosine pairs in polyspecific NKG2D receptor interactions. Mol Immunol 2010;48:516-23. [PMID: 21074271 DOI: 10.1016/j.molimm.2010.10.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2010] [Accepted: 10/14/2010] [Indexed: 11/25/2022]
23
Cortajarena AL, Liu TY, Hochstrasser M, Regan L. Designed proteins to modulate cellular networks. ACS Chem Biol 2010;5:545-52. [PMID: 20020775 DOI: 10.1021/cb9002464] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
24
Grove TZ, Hands M, Regan L. Creating novel proteins by combining design and selection. Protein Eng Des Sel 2010;23:449-55. [PMID: 20304973 PMCID: PMC2865361 DOI: 10.1093/protein/gzq015] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2010] [Revised: 02/15/2010] [Accepted: 02/20/2010] [Indexed: 11/13/2022]  Open
25
Ilagan RP, Rhoades E, Gruber DF, Kao HT, Pieribone VA, Regan L. A new bright green-emitting fluorescent protein--engineered monomeric and dimeric forms. FEBS J 2010;277:1967-78. [PMID: 20345907 PMCID: PMC2855763 DOI: 10.1111/j.1742-4658.2010.07618.x] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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