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For: Wu M, Xie Z, Li X, Kwoh CK, Zheng J. Identifying protein complexes from heterogeneous biological data. Proteins 2013;81:2023-33. [PMID: 23852772 DOI: 10.1002/prot.24365] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2013] [Revised: 06/03/2013] [Accepted: 06/17/2013] [Indexed: 12/27/2022]
Number Cited by Other Article(s)
1
Mei S. A framework combines supervised learning and dense subgraphs discovery to predict protein complexes. FRONTIERS OF COMPUTER SCIENCE 2022;16:161901. [DOI: 10.1007/s11704-021-0476-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 03/09/2021] [Indexed: 01/03/2025]
2
SabziNezhad A, Jalili S. DPCT: A Dynamic Method for Detecting Protein Complexes From TAP-Aware Weighted PPI Network. Front Genet 2020;11:567. [PMID: 32676097 PMCID: PMC7333736 DOI: 10.3389/fgene.2020.00567] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 05/11/2020] [Indexed: 12/13/2022]  Open
3
Chen W, Li W, Huang G, Flavel M. The Applications of Clustering Methods in Predicting Protein Functions. CURR PROTEOMICS 2019. [DOI: 10.2174/1570164616666181212114612] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
4
Lei X, Fang M, Guo L, Wu FX. Protein complex detection based on flower pollination mechanism in multi-relation reconstructed dynamic protein networks. BMC Bioinformatics 2019;20:131. [PMID: 30925866 PMCID: PMC6440282 DOI: 10.1186/s12859-019-2649-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
5
Zhang W, Xu J, Li Y, Zou X. Integrating network topology, gene expression data and GO annotation information for protein complex prediction. J Bioinform Comput Biol 2018;17:1950001. [PMID: 30803297 DOI: 10.1142/s021972001950001x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
6
Cao B, Deng S, Luo J, Ding P, Wang S. Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2018. [DOI: 10.3233/jifs-17026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
7
Ou-Yang L, Yan H, Zhang XF. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks. BMC Bioinformatics 2017;18:463. [PMID: 29219066 PMCID: PMC5773919 DOI: 10.1186/s12859-017-1877-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2025]  Open
8
Wu M, Ou-Yang L, Li XL. Protein Complex Detection via Effective Integration of Base Clustering Solutions and Co-Complex Affinity Scores. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2017;14:733-739. [PMID: 27071190 DOI: 10.1109/tcbb.2016.2552176] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
9
Cao B, Luo J, Liang C, Wang S, Ding P. PCE-FR: A Novel Method for Identifying Overlapping Protein Complexes in Weighted Protein-Protein Interaction Networks Using Pseudo-Clique Extension Based on Fuzzy Relation. IEEE Trans Nanobioscience 2016;15:728-738. [PMID: 27662678 DOI: 10.1109/tnb.2016.2611683] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
10
Ou-Yang L, Zhang XF, Dai DQ, Wu MY, Zhu Y, Liu Z, Yan H. Protein complex detection based on partially shared multi-view clustering. BMC Bioinformatics 2016;17:371. [PMID: 27623844 PMCID: PMC5022186 DOI: 10.1186/s12859-016-1164-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Accepted: 07/23/2016] [Indexed: 01/05/2023]  Open
11
Ou-Yang L, Wu M, Zhang XF, Dai DQ, Li XL, Yan H. A two-layer integration framework for protein complex detection. BMC Bioinformatics 2016;17:100. [PMID: 26911324 PMCID: PMC4765032 DOI: 10.1186/s12859-016-0939-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 01/27/2016] [Indexed: 01/05/2023]  Open
12
Kouhsar M, Zare-Mirakabad F, Jamali Y. WCOACH: Protein complex prediction in weighted PPI networks. Genes Genet Syst 2016;90:317-24. [PMID: 26781082 DOI: 10.1266/ggs.15-00032] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
13
Hu L, Chan KCC. A density-based clustering approach for identifying overlapping protein complexes with functional preferences. BMC Bioinformatics 2015;16:174. [PMID: 26013799 PMCID: PMC4445992 DOI: 10.1186/s12859-015-0583-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Accepted: 04/22/2015] [Indexed: 02/02/2023]  Open
14
A least square method based model for identifying protein complexes in protein-protein interaction network. BIOMED RESEARCH INTERNATIONAL 2014;2014:720960. [PMID: 25405206 PMCID: PMC4227386 DOI: 10.1155/2014/720960] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Accepted: 08/27/2014] [Indexed: 12/02/2022]
15
A novel algorithm for detecting protein complexes with the breadth first search. BIOMED RESEARCH INTERNATIONAL 2014;2014:354539. [PMID: 24818139 PMCID: PMC4003846 DOI: 10.1155/2014/354539] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Accepted: 03/19/2014] [Indexed: 12/27/2022]
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