1
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Dawson NJ, Ivy CM, Alza L, Cheek R, York JM, Chua B, Milsom WK, McCracken KG, Scott GR. Mitochondrial physiology in the skeletal and cardiac muscles is altered in torrent ducks, Merganetta armata, from high altitudes in the Andes. ACTA ACUST UNITED AC 2016; 219:3719-3728. [PMID: 27618861 DOI: 10.1242/jeb.142711] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Accepted: 09/07/2016] [Indexed: 11/20/2022]
Abstract
Torrent ducks inhabit fast-flowing rivers in the Andes from sea level to altitudes up to 4500 m. We examined the mitochondrial physiology that facilitates performance over this altitudinal cline by comparing the respiratory capacities of permeabilized fibers, the activities of 16 key metabolic enzymes and the myoglobin content in muscles between high- and low-altitude populations of this species. Mitochondrial respiratory capacities (assessed using substrates of mitochondrial complexes I, II and/or IV) were higher in highland ducks in the gastrocnemius muscle - the primary muscle used to support swimming and diving - but were similar between populations in the pectoralis muscle and the left ventricle. The heightened respiratory capacity in the gastrocnemius of highland ducks was associated with elevated activities of cytochrome oxidase, phosphofructokinase, pyruvate kinase and malate dehydrogenase (MDH). Although respiratory capacities were similar between populations in the other muscles, highland ducks had elevated activities of ATP synthase, lactate dehydrogenase, MDH, hydroxyacyl CoA dehydrogenase and creatine kinase in the left ventricle, and elevated MDH activity and myoglobin content in the pectoralis. Thus, although there was a significant increase in the oxidative capacity of the gastrocnemius in highland ducks, which correlates with improved performance at high altitudes, the variation in metabolic enzyme activities in other muscles not correlated to respiratory capacity, such as the consistent upregulation of MDH activity, may serve other functions that contribute to success at high altitudes.
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Affiliation(s)
- Neal J Dawson
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S4K1, Canada .,Department of Biology and Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Sciences, University of Miami, Coral Gables, FL 33146, USA
| | - Catherine M Ivy
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S4K1, Canada
| | - Luis Alza
- Department of Biology and Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Sciences, University of Miami, Coral Gables, FL 33146, USA.,Institute of Arctic Biology and University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775, USA.,Centro de Ornitología y Biodiversidad - CORBIDI, Lima 33, Peru
| | - Rebecca Cheek
- Institute of Arctic Biology and University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Julia M York
- Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T1Z4, Canada
| | - Beverly Chua
- Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T1Z4, Canada
| | - William K Milsom
- Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T1Z4, Canada
| | - Kevin G McCracken
- Department of Biology and Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Sciences, University of Miami, Coral Gables, FL 33146, USA.,Institute of Arctic Biology and University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Graham R Scott
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S4K1, Canada
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2
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Grispo MT, Natarajan C, Projecto-Garcia J, Moriyama H, Weber RE, Storz JF. Gene duplication and the evolution of hemoglobin isoform differentiation in birds. J Biol Chem 2012; 287:37647-58. [PMID: 22962007 PMCID: PMC3488042 DOI: 10.1074/jbc.m112.375600] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Revised: 09/06/2012] [Indexed: 11/06/2022] Open
Abstract
The majority of bird species co-express two functionally distinct hemoglobin (Hb) isoforms in definitive erythrocytes as follows: HbA (the major adult Hb isoform, with α-chain subunits encoded by the α(A)-globin gene) and HbD (the minor adult Hb isoform, with α-chain subunits encoded by the α(D)-globin gene). The α(D)-globin gene originated via tandem duplication of an embryonic α-like globin gene in the stem lineage of tetrapod vertebrates, which suggests the possibility that functional differentiation between the HbA and HbD isoforms may be attributable to a retained ancestral character state in HbD that harkens back to a primordial, embryonic function. To investigate this possibility, we conducted a combined analysis of protein biochemistry and sequence evolution to characterize the structural and functional basis of Hb isoform differentiation in birds. Functional experiments involving purified HbA and HbD isoforms from 11 different bird species revealed that HbD is characterized by a consistently higher O(2) affinity in the presence of allosteric effectors such as organic phosphates and Cl(-) ions. In the case of both HbA and HbD, analyses of oxygenation properties under the two-state Monod-Wyman-Changeux allosteric model revealed that the pH dependence of Hb-O(2) affinity stems primarily from changes in the O(2) association constant of deoxy (T-state)-Hb. Ancestral sequence reconstructions revealed that the amino acid substitutions that distinguish the adult-expressed Hb isoforms are not attributable to the retention of an ancestral (pre-duplication) character state in the α(D)-globin gene that is shared with the embryonic α-like globin gene.
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MESH Headings
- Algorithms
- Amino Acid Sequence
- Animals
- Binding Sites/genetics
- Binding, Competitive
- Birds/blood
- Birds/classification
- Birds/genetics
- Cloning, Molecular
- Evolution, Molecular
- Gene Duplication
- Genetic Variation
- Hemoglobin A/chemistry
- Hemoglobin A/genetics
- Hemoglobin A/metabolism
- Hemoglobins/chemistry
- Hemoglobins/genetics
- Hemoglobins/metabolism
- Hemoglobins, Abnormal/chemistry
- Hemoglobins, Abnormal/genetics
- Hemoglobins, Abnormal/metabolism
- Kinetics
- Models, Molecular
- Molecular Sequence Data
- Oxygen/chemistry
- Oxygen/metabolism
- Protein Binding
- Protein Isoforms/chemistry
- Protein Isoforms/genetics
- Protein Isoforms/metabolism
- Protein Structure, Tertiary
- Sequence Analysis, DNA
- Sequence Homology, Amino Acid
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Affiliation(s)
- Michael T. Grispo
- From the School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588 and
| | | | - Joana Projecto-Garcia
- From the School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588 and
| | - Hideaki Moriyama
- From the School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588 and
| | - Roy E. Weber
- Zoophysiology, Institute for Bioscience, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Jay F. Storz
- From the School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588 and
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3
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KSEPKA DANIELT, BALANOFF AMYM, WALSH STIG, REVAN ARIEL, HO AMY. Evolution of the brain and sensory organs in Sphenisciformes: new data from the stem penguin Paraptenodytes antarcticus. Zool J Linn Soc 2012. [DOI: 10.1111/j.1096-3642.2012.00835.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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4
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Weber RE, Campbell KL. Temperature dependence of haemoglobin-oxygen affinity in heterothermic vertebrates: mechanisms and biological significance. Acta Physiol (Oxf) 2011; 202:549-62. [PMID: 20958923 DOI: 10.1111/j.1748-1716.2010.02204.x] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
As demonstrated by August Krogh et al. a century ago, the oxygen-binding reaction of vertebrate haemoglobin is cooperative (described by sigmoid O(2) equilibrium curves) and modulated by CO(2) and protons (lowered pH) that - in conjunction with later discovered allosteric effectors (chloride, lactate and organic phosphate anions) - enhance O(2) unloading from blood in relatively acidic and oxygen-poor tissues. Based on the exothermic nature of the oxygenation of the haem groups, haemoglobin-O(2) affinity also decreases with rising temperature. This thermal sensitivity favours oxygen unloading in warm working muscles, but may become detrimental in regionally heterothermic animals, for example in cold-tolerant birds and mammals and warm-bodied fish, where it may perturb the balance between O(2) unloading and O(2) requirement in organs with substantially different temperatures than at the respiratory organs and thus commonly is reduced or obliterated. Given that the oxygenation of haemoglobin is linked with the endothermic release of allosteric effectors, increased effector interaction is an effective strategy that is widely exploited to achieve adaptive reductions in the temperature dependence of blood-O(2) affinity. The molecular mechanisms implicated in heterothermic vertebrates from different taxonomic groups reveal remarkable variability, both as regards the effectors implicated (protons in tunas, organic phosphates in sharks and billfish, chloride ions in ruminants and chloride and phosphate anions in the extinct woolly mammoth, etc.) and binding sites for the same effectors, indicating multiple evolutionary origins, but convergent physiological functionality (reductions in temperature dependence of O(2) -binding affinity that safeguard tissue O(2) supply).
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Affiliation(s)
- R E Weber
- Zoophysiology, Institute of Biological Sciences, University of Aarhus, Aarhus, Denmark.
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5
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Riccio A, Mangiapia G, Giordano D, Flagiello A, Tedesco R, Bruno S, Vergara A, Mazzarella L, di Prisco G, Pucci P, Paduano L, Verde C. Polymerization of hemoglobins in Arctic fish: Lycodes reticulatus and Gadus morhua. IUBMB Life 2011; 63:346-54. [DOI: 10.1002/iub.450] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2011] [Accepted: 02/16/2011] [Indexed: 12/29/2022]
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6
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Meir JU, Ponganis PJ. High-affinity hemoglobin and blood oxygen saturation in diving emperor penguins. ACTA ACUST UNITED AC 2009; 212:3330-8. [PMID: 19801437 DOI: 10.1242/jeb.033761] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The emperor penguin (Aptenodytes forsteri) thrives in the Antarctic underwater environment, diving to depths greater than 500 m and for durations longer than 23 min. To examine mechanisms underlying the exceptional diving ability of this species and further describe blood oxygen (O2) transport and depletion while diving, we characterized the O2-hemoglobin (Hb) dissociation curve of the emperor penguin in whole blood. This allowed us to (1) investigate the biochemical adaptation of Hb in this species, and (2) address blood O2 depletion during diving, by applying the dissociation curve to previously collected partial pressure of O2 (PO2) profiles to estimate in vivo Hb saturation (SO2) changes during dives. This investigation revealed enhanced Hb-O2 affinity (P50=28 mmHg, pH 7.5) in the emperor penguin, similar to high-altitude birds and other penguin species. This allows for increased O2 at low blood PO2 levels during diving and more complete depletion of the respiratory O2 store. SO2 profiles during diving demonstrated that arterial SO2 levels are maintained near 100% throughout much of the dive, not decreasing significantly until the final ascent phase. End-of-dive venous SO2 values were widely distributed and optimization of the venous blood O2 store resulted from arterialization and near complete depletion of venous blood O2 during longer dives. The estimated contribution of the blood O2 store to diving metabolic rate was low and highly variable. This pattern is due, in part, to the influx of O2 from the lungs into the blood during diving, and variable rates of tissue O2 uptake.
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Affiliation(s)
- Jessica U Meir
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA.
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7
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Giordano D, Boechi L, Vergara A, Martí MA, Samuni U, Dantsker D, Grassi L, Estrin DA, Friedman JM, Mazzarella L, di Prisco G, Verde C. The hemoglobins of the sub-Antarctic fishCottoperca gobio, a phyletically basal species - oxygen-binding equilibria, kinetics and molecular dynamics. FEBS J 2009; 276:2266-77. [DOI: 10.1111/j.1742-4658.2009.06954.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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8
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Ponganis PJ, Stockard TK, Meir JU, Williams CL, Ponganis KV, van Dam RP, Howard R. Returning on empty: extreme blood O2 depletion underlies dive capacity of emperor penguins. ACTA ACUST UNITED AC 2008; 210:4279-85. [PMID: 18055617 DOI: 10.1242/jeb.011221] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Blood gas analyses from emperor penguins (Aptenodytes forsteri) at rest, and intravascular P(O(2)) profiles from free-diving birds were obtained in order to examine hypoxemic tolerance and utilization of the blood O(2) store during dives. Analysis of blood samples from penguins at rest revealed arterial P(O(2))s and O(2) contents of 68+/-7 mmHg (1 mmHg= 133.3 Pa) and 22.5+/-1.3 ml O(2) dl(-1) (N=3) and venous values of 41+/-10 mmHg and 17.4+/-2.9 ml O(2) dl(-1) (N=9). Corresponding arterial and venous Hb saturations for a hemoglobin (Hb) concentration of 18 g dl(-1) were >91% and 70%, respectively. Analysis of P(O(2)) profiles obtained from birds equipped with intravascular P(O(2)) electrodes and backpack recorders during dives revealed that (1) the decline of the final blood P(O(2)) of a dive in relation to dive duration was variable, (2) final venous P(O(2)) values spanned a 40-mmHg range at the previously measured aerobic dive limit (ADL; dive duration associated with onset of post-dive blood lactate accumulation), (3) final arterial, venous and previously measured air sac P(O(2)) values were indistinguishable in longer dives, and (4) final venous P(O(2)) values of longer dives were as low as 1-6 mmHg during dives. Although blood O(2) is not depleted at the ADL, nearly complete depletion of the blood O(2) store occurs in longer dives. This extreme hypoxemic tolerance, which would be catastrophic in many birds and mammals, necessitates biochemical and molecular adaptations, including a shift in the O(2)-Hb dissociation curve of the emperor penguin in comparison to those of most birds. A relatively higher-affinity Hb is consistent with blood P(O(2)) values and O(2) contents of penguins at rest.
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Affiliation(s)
- P J Ponganis
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California-San Diego, La Jolla, CA 92093-0204, USA.
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9
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Giordano D, Vergara A, Lee HC, Peisach J, Balestrieri M, Mazzarella L, Parisi E, di Prisco G, Verde C. Hemoglobin structure/function and globin-gene evolution in the Arctic fish Liparis tunicatus. Gene 2007; 406:58-68. [PMID: 17618067 DOI: 10.1016/j.gene.2007.06.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2007] [Revised: 05/30/2007] [Accepted: 06/04/2007] [Indexed: 11/19/2022]
Abstract
The importance of the Arctic, in contributing to the knowledge of the overall ensemble of adaptive processes influencing the evolution of marine organisms, calls for investigations on molecular adaptations in Arctic fish. Unlike the vast majority of Antarctic Notothenioidei, several Arctic species display high hemoglobin multiplicity. The blood of four species, the spotted wolffish of the family Anarhichadidae and three Gadidae, contains three functionally distinct major components. Similar to many Antarctic notothenioids, Arctic Liparis tunicatus (suborder Cottoidei, family Liparidae) has one major hemoglobin (Hb 1) accompanied by a minor component (Hb 2). This paper reports the structural and functional characterisation of Hb 1 of L. tunicatus. This hemoglobin shows low oxygen affinity, and pronounced Bohr and Root effects. The amino-acid sequence of the beta chain displays an unusual substitution in NA2 (beta2) at the phosphate-binding site, and the replacement of Val E11 (beta67) with Ile. Similar to some Antarctic fish Hbs, electron paramagnetic resonance spectra reveal the formation of a ferric penta-coordinated species even at physiological pH. The amino-acid sequences have also been used to gain insight into the evolutionary history of globins of polar fish. L. tunicatus globins appear close to the notothenioid clades as predicted by teleostean phylogenies. Close phylogenetic relationships between Cottoidei and Notothenioidei, together with their life style, seem to be the main factor driving the globin-sequence evolution.
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Affiliation(s)
- Daniela Giordano
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy
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10
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Sanna MT, Manconi B, Podda G, Olianas A, Pellegrini M, Castagnola M, Messana I, Giardina B. Alkaline Bohr effect of bird hemoglobins: the case of the flamingo. Biol Chem 2007; 388:787-95. [PMID: 17655497 DOI: 10.1515/bc.2007.102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The hemoglobin (Hb) substitution His-->Gln at position alpha89, very common in avian Hbs, is considered to be responsible for the weak Bohr effect of avian Hbs. Phoenicopterus ruber ruber is one of the few avian Hbs that possesses His at alpha89, but it has not been functionally characterized yet. In the present study the Hb system of the greater flamingo (P. ruber roseus), a bird that lives in Mediterranean areas, has been investigated to obtain further insight into the role played by the alpha89 residue in determining the strong reduction of the Bohr effect. Functional analysis of the two purified Hb components (HbA and HbD) of P. ruber roseus showed that both are characterized by high oxygen affinity in the absence of organic phosphates, a strong modulating effect of inositol hexaphosphate, and a reduced Bohr effect. Indeed, in spite of the close phylogenetic relationship between the two flamingo species, structural analysis based on tandem mass spectrometry of the alpha(A) chain of P. ruber roseus Hb showed that a Gln residue is present at position alpha89.
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Affiliation(s)
- Maria Teresa Sanna
- Department of Applied Sciences in Biosystems, University of Cagliari, Cittadella Universitaria, I-09042 Monserrato, Italy.
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11
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Manconi B, Olianas A, Sanna MT, Messana I, Demurtas L, Castagnola M, Giardina B, Pellegrini M. Functional characterization of the single hemoglobin of the migratory bird Ciconia ciconia. Comp Biochem Physiol B Biochem Mol Biol 2007; 147:242-9. [PMID: 17324599 DOI: 10.1016/j.cbpb.2007.01.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2006] [Revised: 01/18/2007] [Accepted: 01/18/2007] [Indexed: 11/19/2022]
Abstract
Hemolysate from white stork displayed a single hemoglobin component, thus resulting into two bands and two globin peaks in dissociating PAGE and reversed phase-HPLC, respectively. Stripped hemoglobin showed an oxygen affinity higher than that of human HbA, a small Bohr effect, and a cooperative oxygen binding. A small decrease of oxygen affinity, of the same extent in all the pH range examined, was observed by addition of chloride, thus indicating an unusual chloride-independent Bohr effect (DeltalogP50/Deltalog pH=-0.24). Saturating amounts of inositol hexakisphosphate, largely decreased hemoglobin-oxygen affinity (DeltalogP(50)=1.17 at pH 7.0), and increased the extent of its Bohr effect (DeltalogP50/DeltalogpH=-0.45). The phosphate binding curve allowed to measure a very high overall binding constant (K=1.18 x 10(5) M(-1)). The effect of temperature on the oxygen affinity was measured, and the enthalpy change of oxygenation resulted almost independent on pH. Structural-functional relationships are discussed by considering some amino acid residues situated at alpha1/beta1 and alpha1/beta2 interfaces, such as alpha38 and alpha89 positions. The presence of only one hemoglobin component, a rare event among birds, and its functional properties have been related to the physiological oxygen requirements of this soaring migrant bird and to its technique of flight during migration.
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Affiliation(s)
- Barbara Manconi
- Dipartimento di Scienze Applicate ai Biosistemi, Università di Cagliari, Cittadella Universitaria, I-09042 Monserrato (CA) Italy
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12
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Verde C, Balestrieri M, de Pascale D, Pagnozzi D, Lecointre G, di Prisco G. The Oxygen Transport System in Three Species of the Boreal Fish Family Gadidae. J Biol Chem 2006; 281:22073-22084. [PMID: 16717098 DOI: 10.1074/jbc.m513080200] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The Arctic and Antarctic marine faunas differ by age and isolation. Fishes of the two polar regions have undergone different regional histories that have driven the physiological diversities. Antarctic fish are highly stenothermal, in keeping with stable water temperatures, whereas Arctic fish, being exposed to seasonal temperature variations, exhibit higher physiological plasticity. This study reports the characterization of the oxygen transport system of three Arctic species of the family Gadidae, namely the Arctic cod Arctogadus glacialis, the polar cod Boreogadus saida, and the Atlantic cod Gadus morhua. Unlike Antarctic notothenioids, the blood displays high multiplicity, i.e. it has three hemoglobins, similar to many other acanthomorph teleosts. In the most abundant hemoglobin, oxygen binding is modulated by heterotropic effectors, with marked Bohr and Root effects. Remarkably, in two species (A. glacialis and B. saida), the Hill coefficient is very close to one in the whole pH range, indicating the apparent absence of cooperativity. The amino acid sequences have been used to gain insight into the evolution history of globins of polar fish. The results indicate that Arctic and Antarctic globins have different phylogenies and lead us to suggest that the selective pressure of environment stability allows the phylogenetic signal to be maintained in the Antarctic sequences, whereas environmental variability would tend to disrupt this signal in the Gadidae sequences.
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Affiliation(s)
- Cinzia Verde
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy
| | - Marco Balestrieri
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy
| | - Donatella de Pascale
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy
| | - Daniela Pagnozzi
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy
| | - Guillaume Lecointre
- UMR 7138 CNRS, Département Systématique et Evolution, Muséum National d'Histoire Naturelle, CP26, 57 Rue Cuvier, 75005 Paris, France
| | - Guido di Prisco
- Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy.
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13
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Knower Stockard T, Heil J, Meir JU, Sato K, Ponganis KV, Ponganis PJ. Air sac PO2 and oxygen depletion during dives of emperor penguins. ACTA ACUST UNITED AC 2006; 208:2973-80. [PMID: 16043602 DOI: 10.1242/jeb.01687] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
In order to determine the rate and magnitude of respiratory O2 depletion during dives of emperor penguins (Aptenodytes forsteri), air sac O2 partial pressure (PO2) was recorded in 73 dives of four birds at an isolated dive hole. These results were evaluated with respect to hypoxic tolerance, the aerobic dive limit (ADL; dive duration beyond which there is post-dive lactate accumulation) and previously measured field metabolic rates (FMRs). 55% of dives were greater in duration than the previously measured 5.6-min ADL. PO2 and depth profiles revealed compression hyperoxia and gradual O2 depletion during dives. 42% of final PO2s during the dives (recorded during the last 15 s of ascent) were <20 mmHg (<2.7 kPa). Assuming that the measured air sac PO2 is representative of the entire respiratory system, this implies remarkable hypoxic tolerance in emperors. In dives of durations greater than the ADL, the calculated end-of-dive air sac O2 fraction was <4%. The respiratory O2 store depletion rate of an entire dive, based on the change in O2 fraction during a dive and previously measured diving respiratory volume, ranged from 1 to 5 ml O2 kg(-1) min(-1) and decreased exponentially with diving duration. The mean value, 2.1+/-0.8 ml O2 kg(-1) min(-1), was (1) 19-42% of previously measured respiratory O(2) depletion rates during forced submersions and simulated dives, (2) approximately one-third of the predicted total body resting metabolic rate and (3) approximately 10% of the measured FMR. These findings are consistent with a low total body metabolic rate during the dive.
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Affiliation(s)
- T Knower Stockard
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093-0204, USA
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14
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Verde C, De Rosa M, Giordano D, Mosca D, De Pascale D, Raiola L, Cocca E, Carratore V, Giardina B, Di Prisco G. Structure, function and molecular adaptations of haemoglobins of the polar cartilaginous fish Bathyraja eatonii and Raja hyperborea. Biochem J 2005; 389:297-306. [PMID: 15807670 PMCID: PMC1175106 DOI: 10.1042/bj20050305] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Cartilaginous fish are very ancient organisms. In the Antarctic sea, the modern chondrichthyan genera are poorly represented, with only three species of sharks and eight species of skates; the paucity of chondrichthyans is probably an ecological consequence of unusual trophic or habitat conditions in the Southern Ocean. In the Arctic, there are 26 species belonging to the class Chondrichthyes. Fish in the two polar regions have been subjected to different regional histories that have influenced the development of diversity: Antarctic marine organisms are highly stenothermal, in response to stable water temperatures, whereas the Arctic communities are exposed to seasonal temperature variations. The structure and function of the oxygen-transport haem protein from the Antarctic skate Bathyraja eatonii and from the Arctic skate Raja hyperborea (both of the subclass Elasmobranchii, order Rajiformes, family Rajidae) is reported in the present paper. These species have a single major haemoglobin (Hb 1; over 80% of the total). The Bohr-proton and the organophosphate-binding sites are absent. Thus the haemoglobins of northern and southern polar skates appear functionally similar, whereas differences were observed with several temperate elasmobranchs. Such evidence suggests that, in temperate and polar habitats, physiological adaptations have evolved along distinct pathways, whereas, in this case, the effect of the differences characterizing the two polar environments is negligible.
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Affiliation(s)
- Cinzia Verde
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - M. Cristina De Rosa
- †Institute of Biochemistry and Clinical Biochemistry and C.N.R. Institute of Chemistry of Molecular Recognition, Catholic University, I-00168 Rome, Italy
| | - Daniela Giordano
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - Donato Mosca
- †Institute of Biochemistry and Clinical Biochemistry and C.N.R. Institute of Chemistry of Molecular Recognition, Catholic University, I-00168 Rome, Italy
| | - Donatella De Pascale
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - Luca Raiola
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - Ennio Cocca
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - Vitale Carratore
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
| | - Bruno Giardina
- †Institute of Biochemistry and Clinical Biochemistry and C.N.R. Institute of Chemistry of Molecular Recognition, Catholic University, I-00168 Rome, Italy
- To whom correspondence should be addressed (email )
| | - Guido Di Prisco
- *Institute of Protein Biochemistry, C.N.R., Via Marconi 12, I-80125 Naples, Italy
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Giardina B, Mosca D, De Rosa MC. The Bohr effect of haemoglobin in vertebrates: an example of molecular adaptation to different physiological requirements. ACTA ACUST UNITED AC 2005; 182:229-44. [PMID: 15491403 DOI: 10.1111/j.1365-201x.2004.01360.x] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
The Bohr effect, i.e. the pH dependence of the oxygen affinity of haemoglobins (Hbs) from a variety of vertebrates, and its modulation by temperature and other heterotropic effectors has been reviewed. Haemoglobins from vertebrates were not reviewed following the usual classification (i.e. mammals, birds, etc.); instead we have selected several key examples of animals, which are confronted with a similar environmental situation therefore displaying a similar life style. Hence, the paper starts from a description of the general concepts at the basis of the Bohr effect as exemplified by human HbA and goes towards the analysis of the modulation mechanisms which have been observed in different animals in response to the needs induced by: (i) life in cold environments; (ii) diving behaviour; (iii) flight; and (iv) aquatic life. The emerging picture indicates a complex organization of the information contained in the Hb molecule, the oxygen-binding properties of which depend both on the intrinsic characteristics of the protein and on its heterotropic interactions with ligands such as protons (Bohr effect), small anions like chloride and organic phosphates. In addition, each one of the functional effects induced by binding of a given effector appears to be under the strict control of temperature that enhances or decreases its relative weight with respect to all the others. It is just by this sophisticated network of interactions that the Hb molecule is able to satisfy the physiological requirements of a multitude of organisms without changing dramatically its quaternary structure.
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Affiliation(s)
- B Giardina
- Institute of Biochemistry and Clinical Biochemistry and CNR Institute of Chemistry of Molecular Recognition, Catholic University of Rome, Rome, Italy
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16
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De Rosa MC, Castagnola M, Bertonati C, Galtieri A, Giardina B. From the Arctic to fetal life: physiological importance and structural basis of an 'additional' chloride-binding site in haemoglobin. Biochem J 2004; 380:889-96. [PMID: 14979874 PMCID: PMC1224201 DOI: 10.1042/bj20031421] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2003] [Revised: 01/28/2004] [Accepted: 02/23/2004] [Indexed: 11/17/2022]
Abstract
Haemoglobins from mammals of sub-Arctic and Arctic species, as well as fetal human Hb, are all characterized by a significantly lower Delta H of oxygenation compared with the majority of mammalian haemoglobins from temperate species (exceptions are represented by some cold-resistant species, such as cow, horse and pig). This has been interpreted as an adaptive mechanism of great importance from a physiological point of view. To date, the molecular basis of this thermodynamic characteristic is still not known. In the present study, we show that binding of extra chloride (with respect to adult human Hb) ions to Hb would significantly contribute to lowering the overall heat of oxygenation, thus providing a molecular basis for the low effect of temperature on the oxygenation-deoxygenation cycle. To this aim, the oxygen binding properties of bovine Hb, bear (Ursus arctos) Hb and horse Hb, which are representative of this series of haemoglobins, have been studied with special regard to the effect of heterotropic ligands, such as organic phosphates (namely 2,3-diphosphoglycerate) and chloride. Functional results are consistent with a mechanism for ligand binding that involves an additional binding site for chloride ion. Analysis of computational chemistry results, obtained by the GRID program, further confirm the hypothesis that the reason for the lower Delta H of oxygenation is mainly due to an increase in the number of the oxygen-linked chloride-binding sites.
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Affiliation(s)
- M Cristina De Rosa
- Institute of Biochemistry and Clinical Biochemistry and CNR Institute of Chemistry of Molecular Recognition, Catholic University of Rome, L.go F. Vito 1, 00168 Rome, Italy
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17
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Verde C, Howes BD, De Rosa MC, Raiola L, Smulevich G, Williams R, Giardina B, Parisi E, Di Prisco G. Structure and function of the Gondwanian hemoglobin of Pseudaphritis urvillii, a primitive notothenioid fish of temperate latitudes. Protein Sci 2004; 13:2766-81. [PMID: 15340169 PMCID: PMC2286566 DOI: 10.1110/ps.04861504] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
The suborder Notothenioidei dominates the Antarctic ichthyofauna. The non-Antarctic monotypic family Pseudaphritidae is one of the most primitive families. The characterization of the oxygen-transport system of euryhaline Pseudaphritis urvillii is herewith reported. Similar to most Antarctic notothenioids, this temperate species has a single major hemoglobin (Hb 1, over 95% of the total). Hb 1 has strong Bohr and Root effects. It shows two very uncommon features in oxygen binding: At high pH values, the oxygen affinity is exceptionally high compared to other notothenioids, and subunit cooperativity is modulated by pH in an unusual way, namely the curve of the Hill coefficient is bell-shaped, with values approaching 1 at both extremes of pH. Molecular modeling, electronic absorption and resonance Raman spectra have been used to characterize the heme environment of Hb 1 in an attempt to explain these features, particularly in view of some potentially important nonconservative replacements found in the primary structure. Compared to human HbA, no major changes were found in the structure of the proximal cavity of the alpha-chain of Hb 1, although an altered distal histidyl and heme position was identified in the models of the beta-chain, possibly facilitated by a more open heme pocket due to reduced steric constraints on the vinyl substituent groups. This conformation may lead to the hemichrome form identified by spectroscopy in the Met state, which likely fulfils a potentially important physiological role.
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Affiliation(s)
- Cinzia Verde
- Institute of Protein Biochemistry, National Research Council, Naples, Italy
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18
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Verde C, Carratore V, Riccio A, Tamburrini M, Parisi E, Di Prisco G. The functionally distinct hemoglobins of the Arctic spotted wolffish Anarhichas minor. J Biol Chem 2002; 277:36312-20. [PMID: 12118003 DOI: 10.1074/jbc.m202474200] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The Arctic fish Anarhichas minor, a benthic sedentary species, displays high hemoglobin multiplicity. The three major hemoglobins (Hb 1, Hb 2, and Hb 3) show important functional differences in pH and organophosphate regulation, subunit cooperativity, and response of oxygen binding to temperature. Hb 1 and Hb 2 display a low, effector-enhanced Bohr effect and no Root effect. In contrast, Hb 3 displays pronounced Bohr and Root effects, accompanied by strong organophosphate regulation. Hb 1 has the beta (beta(1)) chain in common with Hb 2; Hb 3 and Hb 2 share the alpha (alpha(2)) chain. The amino acid sequences have been established. Several substitutions in crucial positions were observed, such as Cys in place of C-terminal His in the beta(1) chain of Hb 1 and Hb 2. In Hb 3, Val E11 of the beta(2) chain is replaced by Ile. Homology modeling revealed an unusual structure of the Hb 3 binding site of inositol hexakisphoshate. Phylogenetic analysis indicated that only Hb 2 displays higher overall similarity with the major Antarctic hemoglobins. The oxygen transport system of A. minor differs remarkably from those of Antarctic Notothenioidei, indicating distinct evolutionary pathways in the regulatory mechanisms of the fish respiratory system in the two polar environments.
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Affiliation(s)
- Cinzia Verde
- Institute of Protein Biochemistry, Consiglio Nazionale delle Ricerche, Via Marconi 12, I-80125 Naples, Italy
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19
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Tamburrini M, Riccio A, Romano M, Giardina B, di Prisco G. Structural and functional analysis of the two haemoglobins of the antarctic seabird Catharacta maccormicki characterization of an additional phosphate binding site by molecular modelling. EUROPEAN JOURNAL OF BIOCHEMISTRY 2000; 267:6089-98. [PMID: 10998071 DOI: 10.1046/j.1432-1327.2000.01699.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The amino-acid sequence and the oxygen-binding properties of the two haemoglobins of the Antarctic seabird south polar skua have been investigated. The two haemoglobins showed peculiar functional features, which were probably acquired to meet special needs in relation to the extreme environmental conditions. Both haemoglobins showed a weak alkaline Bohr effect which, during prolonged flight, may protect against sudden and uncontrolled stripping of oxygen in response to acidosis. We suggest that a weak Bohr effect in birds may reflect adaptation to extreme life conditions. The values of heat of oxygenation suggest different functional roles of the two haemoglobins. The experimental evidence suggests that both haemoglobins may bind phosphate at two distinct binding sites. In fact, analysis of the molecular models revealed that an additional phosphate binding site, formed by residues NA1alpha, G6alpha and HC3alpha, is located between the two alpha chains. This additional site may act as an entry/leaving site, thus increasing the probability of capturing phosphate and transferring it to the main binding site located between the two beta chains by means of a site-site migratory mechanism, thereby favouring the release of oxygen. It is suggested that most haemoglobins possess an additional phosphate binding site, having such a role in oxygen transport.
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Affiliation(s)
- M Tamburrini
- Institute of Protein Biochemistry and Enzymology, CNR, Naples, Italy
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20
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di Prisco G, Carratore V, Cocca E, Riccio A, Tamburrini M. Molecular structure and functional adaptations of hemoglobins from Antarctic marine organisms. ACTA ACUST UNITED AC 2000. [DOI: 10.1080/11250000009356354] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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21
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Tamburrini M, Romano M, Giardina B, di Prisco G. The myoglobin of Emperor penguin (Aptenodytes forsteri): amino acid sequence and functional adaptation to extreme conditions. Comp Biochem Physiol B Biochem Mol Biol 1999; 122:235-40. [PMID: 10327612 DOI: 10.1016/s0305-0491(99)00004-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
In the framework of a study on molecular adaptations of the oxygen-transport and storage systems to extreme conditions in Antarctic marine organisms, we have investigated the structure/function relationship in Emperor penguin (Aptenodytes forsteri) myoglobin, in search of correlation with the bird life style. In contrast with previous reports, the revised amino acid sequence contains one additional residue and 15 differences. The oxygen-binding parameters seem well adapted to the diving behaviour of the penguin and to the environmental conditions of the Antarctic habitat. Addition of lactate has no major effect on myoglobin oxygenation over a large temperature range. Therefore, metabolic acidosis does not impair myoglobin function under conditions of prolonged physical effort, such as diving.
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Affiliation(s)
- M Tamburrini
- Institute of Protein Biochemistry and Enzymology, CNR, Naples, Italy
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23
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Abstract
Many endothermic divers regularly exceed the theoretical limit to the duration of aerobic dives, suggesting that assumptions about either the oxygen storage capacity of tissues or the metabolic rate of divers are wrong. This study examined the frequency distributions of dive durations in five species of endothermic divers from the island of South Georgia, South Atlantic. The theoretical aerobic dive time (TADT), calculated from average field metabolic rates, was exceeded regularly by all species except the Antarctic fur seal (<6% of dives). In contrast, the gentoo penguin exceeded its TADT in 69% of dives and the elephant seal in 91%. The frequency distributions of dive durations were bimodal, most especially in the penguins, with one mode below the TADT and another above the TADT, suggesting two different physiological strategies for diving. Interspecific allometric comparisons of dive durations in endothermic divers showed that, in general, relative dive durations in seabirds were greater than in pinnipeds. Dive durations in pinnipeds scaled approximately to field metabolic rate, whereas in seabirds they scaled most closely to flipper surface area, suggesting that they may be partly limited by the rate and degree of conduction of heat to the water.
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24
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Petruzzelli R, Aureli G, Lania A, Galtieri A, Desideri A, Giardina B. Diving behaviour and haemoglobin function: the primary structure of the alpha- and beta-chains of the sea turtle (Caretta caretta) and its functional implications. Biochem J 1996; 316 ( Pt 3):959-65. [PMID: 8670176 PMCID: PMC1217442 DOI: 10.1042/bj3160959] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The amino acid sequence of the alpha- and beta-chains of haemoglobin (Hb) from the loggerhead sea turtle (Caretta caretta) has been determined. Comparison with that of human Hb shows differences in several residues involved in both alpha 1 beta 1 and alpha 1 beta 2 packing contacts. On the whole, in spite of the mutations, the essential characteristics of both interfaces seem to be maintained. The functional properties of the sea turtle Hb have been investigated at different temperatures and as a function of proton, chloride and organic phosphate concentrations. In addition to overall similarities shared with most of the vertebrate Hbs previously described, this molecule shows significant differences which could be related to the life behaviour of the turtle. In fact, while the shape of the Bohr-effect curve is well adapted for gas exchange during prolonged dives, the very small enthalpy change for O2 binding ensures that O2 delivery becomes essentially insensitive to the temperature changes of the environment. Moreover, and similarly to the case of emperor penguin Hb, the small alkaline Bohr effect appears to be only choride-linked, since the pH dependence of the O2 affinity is abolished in the absence of this ion. These functional characteristics are discussed on the basis of the primary structure of alpha- and beta-chains.
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Affiliation(s)
- R Petruzzelli
- Istituto di Scienze Biochimiche, Facolta' di Medicina, Universita' di Chieti, Italy
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25
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Clementi ME, Condò SG, Castagnola M, Giardina B. Hemoglobin function under extreme life conditions. EUROPEAN JOURNAL OF BIOCHEMISTRY 1994; 223:309-17. [PMID: 7519981 DOI: 10.1111/j.1432-1033.1994.tb18996.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Considering the variety of species that depend on hemoglobin for oxygen transport, these molecules must execute their primary function under extreme environmental conditions. Hence, a thermodynamic analysis of oxygen binding with hemoglobins from different species reveals a series of adaptive mechanisms which are based on the thermodynamic connection between the binding of heterotropic effectors and the reaction with oxygen. The examples reported, from fishes to human fetus, illustrate how evolution can alter the structural basis of the heterotropic interactions to optimize the oxygenation-deoxygenation cycle in dependence of the physiological needs of the particular organisms. Moreover they show that a thermodynamic analysis of the reaction with oxygen overcomes the meaning of a detailed structural and functional characterization going deeper into the physiology of the specific organism.
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Affiliation(s)
- M E Clementi
- Department of Experimental Medicine and Biochemical Sciences, University of Rome Tor Vergata, Italy
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