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For: Kajava AV. Review: proteins with repeated sequence--structural prediction and modeling. J Struct Biol 2001;134:132-44. [PMID: 11551175 DOI: 10.1006/jsbi.2000.4328] [Citation(s) in RCA: 95] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Górna MW, Merski M. Discovery and Analysis of Repeat and Low-Complexity Architectures in Proteins and Their Conserved Evolutionary Relationships Using Self-Homology Dot Plots. Methods Mol Biol 2025;2870:95-116. [PMID: 39543033 DOI: 10.1007/978-1-0716-4213-9_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
2
Arrías PN, Osmanli Z, Peralta E, Chinestrad PM, Monzon AM, Tosatto SCE. Diversity and structural-functional insights of alpha-solenoid proteins. Protein Sci 2024;33:e5189. [PMID: 39465903 PMCID: PMC11514114 DOI: 10.1002/pro.5189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 09/25/2024] [Accepted: 09/29/2024] [Indexed: 10/29/2024]
3
Mezgec K, Snoj J, Ulčakar L, Ljubetič A, Tušek Žnidarič M, Škarabot M, Jerala R. Coupling of Spectrin Repeat Modules for the Assembly of Nanorods and Presentation of Protein Domains. ACS NANO 2024;18:28748-28763. [PMID: 39392430 PMCID: PMC11503911 DOI: 10.1021/acsnano.4c07701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Revised: 09/25/2024] [Accepted: 10/01/2024] [Indexed: 10/12/2024]
4
Machulin AV, Deryusheva EI, Galzitskaya OV. Variation in base composition, structure-function relationships, and origins of structural repetition in bacterial rpsA gene. Biosystems 2024;238:105196. [PMID: 38537772 DOI: 10.1016/j.biosystems.2024.105196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 03/22/2024] [Accepted: 03/22/2024] [Indexed: 04/12/2024]
5
Nowakowska AW, Wojciechowski JW, Szulc N, Kotulska M. The role of tandem repeats in bacterial functional amyloids. J Struct Biol 2023;215:108002. [PMID: 37482232 DOI: 10.1016/j.jsb.2023.108002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 07/05/2023] [Accepted: 07/20/2023] [Indexed: 07/25/2023]
6
Mesdaghi S, Price RM, Madine J, Rigden DJ. Deep Learning-based structure modelling illuminates structure and function in uncharted regions of β-solenoid fold space. J Struct Biol 2023;215:108010. [PMID: 37544372 DOI: 10.1016/j.jsb.2023.108010] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 07/19/2023] [Accepted: 08/03/2023] [Indexed: 08/08/2023]
7
Manasra S, Kajava AV. Why does the first protein repeat often become the only one? J Struct Biol 2023;215:108014. [PMID: 37567371 DOI: 10.1016/j.jsb.2023.108014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 08/06/2023] [Accepted: 08/09/2023] [Indexed: 08/13/2023]
8
Mitochondrial COA7 is a heme-binding protein with disulfide reductase activity, which acts in the early stages of complex IV assembly. Proc Natl Acad Sci U S A 2022;119:2110357119. [PMID: 35210360 PMCID: PMC8892353 DOI: 10.1073/pnas.2110357119] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/11/2022] [Indexed: 12/12/2022]  Open
9
Chakrabarty B, Parekh N. DbStRiPs: Database of structural repeats in proteins. Protein Sci 2022;31:23-36. [PMID: 33641184 PMCID: PMC8740836 DOI: 10.1002/pro.4052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/11/2021] [Accepted: 02/15/2021] [Indexed: 01/03/2023]
10
Deryusheva EI, Machulin AV, Galzitskaya OV. Structural, Functional, and Evolutionary Characteristics of Proteins with Repeats. Mol Biol 2021. [DOI: 10.1134/s0026893321040038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
11
Parisi G, Palopoli N, Tosatto SC, Fornasari MS, Tompa P. "Protein" no longer means what it used to. Curr Res Struct Biol 2021;3:146-152. [PMID: 34308370 PMCID: PMC8283027 DOI: 10.1016/j.crstbi.2021.06.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 06/18/2021] [Accepted: 06/22/2021] [Indexed: 01/02/2023]  Open
12
Izert MA, Szybowska PE, Górna MW, Merski M. The Effect of Mutations in the TPR and Ankyrin Families of Alpha Solenoid Repeat Proteins. FRONTIERS IN BIOINFORMATICS 2021;1:696368. [PMID: 36303725 PMCID: PMC9581033 DOI: 10.3389/fbinf.2021.696368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 06/22/2021] [Indexed: 11/20/2022]  Open
13
Rudenko V, Korotkov E. Search for Highly Divergent Tandem Repeats in Amino Acid Sequences. Int J Mol Sci 2021;22:ijms22137096. [PMID: 34281150 PMCID: PMC8269118 DOI: 10.3390/ijms22137096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 06/25/2021] [Accepted: 06/28/2021] [Indexed: 11/29/2022]  Open
14
Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families. PLoS Comput Biol 2021;17:e1008798. [PMID: 33857128 PMCID: PMC8078820 DOI: 10.1371/journal.pcbi.1008798] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 04/27/2021] [Accepted: 02/15/2021] [Indexed: 12/18/2022]  Open
15
Petersen M, Barrick D. Analysis of Tandem Repeat Protein Folding Using Nearest-Neighbor Models. Annu Rev Biophys 2021;50:245-265. [PMID: 33606943 DOI: 10.1146/annurev-biophys-102220-083020] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
16
PRIGSA2: Improved version of protein repeat identification by graph spectral analysis. J Biosci 2020. [DOI: 10.1007/s12038-020-00058-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
17
Merski M, Młynarczyk K, Ludwiczak J, Skrzeczkowski J, Dunin-Horkawicz S, Górna MW. Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinformatics 2020;21:179. [PMID: 32381046 PMCID: PMC7204011 DOI: 10.1186/s12859-020-3493-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Accepted: 04/15/2020] [Indexed: 11/26/2022]  Open
18
Perez-Riba A, Lowe AR, Main ERG, Itzhaki LS. Context-Dependent Energetics of Loop Extensions in a Family of Tandem-Repeat Proteins. Biophys J 2019;114:2552-2562. [PMID: 29874606 PMCID: PMC6129472 DOI: 10.1016/j.bpj.2018.03.038] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 02/28/2018] [Accepted: 03/29/2018] [Indexed: 11/16/2022]  Open
19
A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat Protein Families. Methods Mol Biol 2019. [PMID: 30298401 DOI: 10.1007/978-1-4939-8736-8_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
20
Aires A, Llarena I, Moller M, Castro‐Smirnov J, Cabanillas‐Gonzalez J, Cortajarena AL. A Simple Approach to Design Proteins for the Sustainable Synthesis of Metal Nanoclusters. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
21
Aires A, Llarena I, Moller M, Castro‐Smirnov J, Cabanillas‐Gonzalez J, Cortajarena AL. A Simple Approach to Design Proteins for the Sustainable Synthesis of Metal Nanoclusters. Angew Chem Int Ed Engl 2019;58:6214-6219. [PMID: 30875448 PMCID: PMC6617723 DOI: 10.1002/anie.201813576] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Revised: 02/19/2019] [Indexed: 12/24/2022]
22
Perez-Riba A, Synakewicz M, Itzhaki LS. Folding cooperativity and allosteric function in the tandem-repeat protein class. Philos Trans R Soc Lond B Biol Sci 2019;373:rstb.2017.0188. [PMID: 29735741 DOI: 10.1098/rstb.2017.0188] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/17/2018] [Indexed: 01/08/2023]  Open
23
Perez-Riba A, Itzhaki LS. The tetratricopeptide-repeat motif is a versatile platform that enables diverse modes of molecular recognition. Curr Opin Struct Biol 2019;54:43-49. [PMID: 30708253 DOI: 10.1016/j.sbi.2018.12.004] [Citation(s) in RCA: 99] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 12/09/2018] [Accepted: 12/12/2018] [Indexed: 01/05/2023]
24
Sanchez-deAlcazar D, Mejias SH, Erazo K, Sot B, Cortajarena AL. Self-assembly of repeat proteins: Concepts and design of new interfaces. J Struct Biol 2018;201:118-129. [DOI: 10.1016/j.jsb.2017.09.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 08/09/2017] [Accepted: 09/02/2017] [Indexed: 11/25/2022]
25
Rämisch S, Pramhed A, Tillgren V, Aspberg A, Logan DT. Crystal structure of human chondroadherin: solving a difficult molecular-replacement problem usingde novomodels. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY 2017;73:53-63. [DOI: 10.1107/s205979831601980x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Accepted: 12/12/2016] [Indexed: 02/08/2023]
26
Schüler A, Bornberg-Bauer E. Evolution of Protein Domain Repeats in Metazoa. Mol Biol Evol 2016;33:3170-3182. [PMID: 27671125 PMCID: PMC5100051 DOI: 10.1093/molbev/msw194] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
27
Biomolecular templating of functional hybrid nanostructures using repeat protein scaffolds. Biochem Soc Trans 2016;43:825-31. [PMID: 26517889 DOI: 10.1042/bst20150077] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
28
Bending-Twisting Motions and Main Interactions in Nucleoplasmin Nuclear Import. PLoS One 2016;11:e0157162. [PMID: 27258022 PMCID: PMC4892583 DOI: 10.1371/journal.pone.0157162] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Accepted: 05/25/2016] [Indexed: 01/11/2023]  Open
29
Identification of repetitive units in protein structures with ReUPred. Amino Acids 2016;48:1391-400. [PMID: 26898549 DOI: 10.1007/s00726-016-2187-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2016] [Accepted: 01/23/2016] [Indexed: 01/02/2023]
30
Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV. CASP 11 target classification. Proteins 2016;84 Suppl 1:20-33. [PMID: 26756794 DOI: 10.1002/prot.24982] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Revised: 12/22/2015] [Accepted: 01/05/2016] [Indexed: 11/09/2022]
31
Louros NN, Baltoumas FA, Hamodrakas SJ, Iconomidou VA. A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils. J Comput Aided Mol Des 2016;30:153-64. [PMID: 26754844 DOI: 10.1007/s10822-015-9892-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 12/21/2015] [Indexed: 10/22/2022]
32
Designed Repeat Proteins as Building Blocks for Nanofabrication. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2016;940:61-81. [DOI: 10.1007/978-3-319-39196-0_4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
33
Pellegrini M. Tandem Repeats in Proteins: Prediction Algorithms and Biological Role. Front Bioeng Biotechnol 2015;3:143. [PMID: 26442257 PMCID: PMC4585158 DOI: 10.3389/fbioe.2015.00143] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Accepted: 09/07/2015] [Indexed: 12/30/2022]  Open
34
Chakrabarty B, Parekh N. PRIGSA: protein repeat identification by graph spectral analysis. J Bioinform Comput Biol 2015;12:1442009. [PMID: 25385083 DOI: 10.1142/s0219720014420098] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
35
Do Viet P, Roche DB, Kajava AV. TAPO: A combined method for the identification of tandem repeats in protein structures. FEBS Lett 2015;589:2611-9. [PMID: 26320412 DOI: 10.1016/j.febslet.2015.08.025] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Revised: 08/10/2015] [Accepted: 08/13/2015] [Indexed: 10/23/2022]
36
Chakrabarty B, Parekh N. Identifying tandem Ankyrin repeats in protein structures. BMC Bioinformatics 2014;15:6599. [PMID: 25547411 PMCID: PMC4307672 DOI: 10.1186/s12859-014-0440-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Accepted: 12/18/2014] [Indexed: 11/10/2022]  Open
37
Kaushik S, Sowdhamini R. Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages. BMC Genomics 2014;15:985. [PMID: 25407321 PMCID: PMC4522959 DOI: 10.1186/1471-2164-15-985] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Accepted: 10/09/2014] [Indexed: 11/30/2022]  Open
38
Jost C, Plückthun A. Engineered proteins with desired specificity: DARPins, other alternative scaffolds and bispecific IgGs. Curr Opin Struct Biol 2014;27:102-12. [PMID: 25033247 DOI: 10.1016/j.sbi.2014.05.011] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2014] [Revised: 05/13/2014] [Accepted: 05/23/2014] [Indexed: 12/22/2022]
39
Hrabe T, Godzik A. ConSole: using modularity of contact maps to locate solenoid domains in protein structures. BMC Bioinformatics 2014;15:119. [PMID: 24766872 PMCID: PMC4021314 DOI: 10.1186/1471-2105-15-119] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 04/17/2014] [Indexed: 11/10/2022]  Open
40
Jeoung M, Abdelmoti L, Jang ER, Vander Kooi CW, Galperin E. Functional Integration of the Conserved Domains of Shoc2 Scaffold. PLoS One 2013;8:e66067. [PMID: 23805200 PMCID: PMC3689688 DOI: 10.1371/journal.pone.0066067] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Accepted: 05/05/2013] [Indexed: 01/25/2023]  Open
41
Hoang TX, Trovato A, Seno F, Banavar JR, Maritan A. Sequence repeats and protein structure. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012;86:050901. [PMID: 23214731 DOI: 10.1103/physreve.86.050901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Indexed: 06/01/2023]
42
Varadamsetty G, Tremmel D, Hansen S, Parmeggiani F, Plückthun A. Designed Armadillo Repeat Proteins: Library Generation, Characterization and Selection of Peptide Binders with High Specificity. J Mol Biol 2012;424:68-87. [DOI: 10.1016/j.jmb.2012.08.029] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2012] [Revised: 08/06/2012] [Accepted: 08/23/2012] [Indexed: 11/16/2022]
43
Artificial proteins from combinatorial approaches. Trends Biotechnol 2012;30:512-20. [DOI: 10.1016/j.tibtech.2012.06.001] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 06/01/2012] [Accepted: 06/06/2012] [Indexed: 11/21/2022]
44
Walsh I, Sirocco FG, Minervini G, Di Domenico T, Ferrari C, Tosatto SCE. RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures. ACTA ACUST UNITED AC 2012;28:3257-64. [PMID: 22962341 DOI: 10.1093/bioinformatics/bts550] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
45
Corradin G, Céspedes N, Verdini A, Kajava AV, Arévalo-Herrera M, Herrera S. Malaria vaccine development using synthetic peptides as a technical platform. Adv Immunol 2012;114:107-49. [PMID: 22449780 DOI: 10.1016/b978-0-12-396548-6.00005-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
46
Kajava AV. Tandem repeats in proteins: from sequence to structure. J Struct Biol 2011;179:279-88. [PMID: 21884799 DOI: 10.1016/j.jsb.2011.08.009] [Citation(s) in RCA: 169] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2011] [Revised: 08/15/2011] [Accepted: 08/17/2011] [Indexed: 10/17/2022]
47
Structures and functions of autotransporter proteins in microbial pathogens. Int J Med Microbiol 2011;301:461-8. [DOI: 10.1016/j.ijmm.2011.03.003] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2011] [Revised: 03/22/2011] [Accepted: 03/27/2011] [Indexed: 12/23/2022]  Open
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Jorda J, Kajava AV. Protein homorepeats sequences, structures, evolution, and functions. ADVANCES IN PROTEIN CHEMISTRY AND STRUCTURAL BIOLOGY 2011;79:59-88. [PMID: 20621281 DOI: 10.1016/s1876-1623(10)79002-7] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Kleinau G, Mueller S, Jaeschke H, Grzesik P, Neumann S, Diehl A, Paschke R, Krause G. Defining structural and functional dimensions of the extracellular thyrotropin receptor region. J Biol Chem 2011;286:22622-31. [PMID: 21525003 DOI: 10.1074/jbc.m110.211193] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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Urvoas A, Guellouz A, Valerio-Lepiniec M, Graille M, Durand D, Desravines DC, van Tilbeurgh H, Desmadril M, Minard P. Design, Production and Molecular Structure of a New Family of Artificial Alpha-helicoidal Repeat Proteins (αRep) Based on Thermostable HEAT-like Repeats. J Mol Biol 2010;404:307-27. [DOI: 10.1016/j.jmb.2010.09.048] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2010] [Revised: 09/15/2010] [Accepted: 09/21/2010] [Indexed: 01/07/2023]
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